mRNA_M-pyrifera_M_contig97128.22372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97128.22372.1
Unique NamemRNA_M-pyrifera_M_contig97128.22372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A2E7KJB5_9PLAN (Response regulatory domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJB5_9PLAN)

HSP 1 Score: 159 bits (403), Expect = 5.210e-49
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTDD 240
            LTNE PQLLIIDLNQPEIDWELLTRTMQ YPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTA STDD
Sbjct:   48 LTNELPQLLIIDLNQPEIDWELLTRTMQQYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTALSTDD 127          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A518A5M9_9PLAN (Response regulator receiver domain protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A5M9_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 3.080e-41
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTDD 240
            LT+EFPQ+LIIDLNQPE+DWE+L  T+Q +PQLTSIAYGPH+DT+ LQQARD+GCDQVLPRSQFSANLPR+L+TA S DD
Sbjct:   48 LTDEFPQVLIIDLNQPELDWEVLAATLQKHPQLTSIAYGPHIDTDKLQQARDSGCDQVLPRSQFSANLPRILKTALSPDD 127          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A517REX2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517REX2_9PLAN)

HSP 1 Score: 99.8 bits (247), Expect = 2.810e-25
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFS 231
            L NE  QLL+IDLNQ  +DWELLT   Q    LTSIA+GPH+DTE L +AR AGC QV+PRSQFSA LP+L+  A +
Sbjct:   47 LLNETRQLLLIDLNQQNLDWELLTSIHQGDASLTSIAFGPHIDTERLNKARAAGCTQVIPRSQFSAQLPQLMDAALT 123          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A517WVA7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WVA7_9PLAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.660e-24
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   19 QLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTD 237
            QLL++DLNQP+++W+ L      Y  + SIA+GPHVDTE L++A+ AGC QVLPRSQFSA LP+LLQTA S +
Sbjct:   53 QLLLVDLNQPDLNWQQLASIHDRYSNVVSIAFGPHVDTEGLEKAKAAGCTQVLPRSQFSAQLPQLLQTALSVE 125          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A518IBQ9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IBQ9_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.390e-22
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAF 228
            L+NE  QLL+IDL Q  +DW LL    Q    ++SIA+GPHVDTE L +A + GC QVLPRSQFSA LPRL+  AF
Sbjct:   47 LSNETRQLLLIDLTQQNLDWGLLESIHQRNDSISSIAFGPHVDTERLAKASEIGCTQVLPRSQFSAQLPRLIDAAF 122          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A6CCL8_9PLAN (Response regulator receiver protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CCL8_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-22
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTD 237
            L +   Q+L++DLNQP ++WE L    Q +P L S+A+GPHVD E L+ AR+AGC +V+PRS+FSA LP++L++A + +
Sbjct:   45 LDDTIRQVLLVDLNQPSLNWEQLKSIHQEHPALISVAFGPHVDVEKLEAAREAGCSEVMPRSRFSAQLPQILESALAEE 123          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A517V8T0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V8T0_9PLAN)

HSP 1 Score: 85.5 bits (210), Expect = 1.090e-19
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   19 QLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTD 237
            Q+L++DLNQP ++W+ L    Q +P L SIA+GPHVD E L  AR AGC +V+PRS+FSA L ++L++A + +
Sbjct:   51 QVLLVDLNQPSLNWDQLKTIHQEHPALISIAFGPHVDVEKLAAARAAGCTEVMPRSRFSAQLSQILESALTEE 123          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: UPI001991CC0F (Response regulator transcription factor n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI001991CC0F)

HSP 1 Score: 65.9 bits (159), Expect = 5.310e-12
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 PQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTAFSTDD 240
            P  + +DLN P+ D   +   +    +   IA+G HVD   L +AR AGCD V+PRS FSA LP+LL+  F + +
Sbjct:   48 PHAVFLDLNCPDFDPSRVVAALPSESRPRVIAFGSHVDEARLNEARAAGCDDVMPRSTFSATLPKLLRQIFESGE 122          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: A0A517ZPN0_9PLAN (Uncharacterized protein n=2 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZPN0_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.240e-12
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   19 QLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQTA 225
            +L+IIDL QP I    +   +    +   IAYG HV T TLQ ARDAGCD+V+PRS+FSA L  +L+ A
Sbjct:   54 RLVIIDLAQPSIVPAEVVARLSTADRPHVIAYGSHVATATLQAARDAGCDEVMPRSRFSAELAEILRHA 122          
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Match: UPI001260B7E1 (response regulator n=1 Tax=Tautonia marina TaxID=2653855 RepID=UPI001260B7E1)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   16 PQLLIIDLNQPEI-DWELLTRTMQPYPQLTSIAYGPHVDTETLQQARDAGCDQVLPRSQFSANLPRLLQ 219
            P+++ +DL+ P     E+L       P+   IA+G HVD + L  ARD GCD VLPRS+F+A LP L+Q
Sbjct:   56 PRVVFVDLSHPHFAQSEVLLAYRNLAPEARFIAFGSHVDVQALSAARDVGCDPVLPRSKFTAELPALIQ 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97128.22372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KJB5_9PLAN5.210e-4996.25Response regulatory domain-containing protein n=5 ... [more]
A0A518A5M9_9PLAN3.080e-4178.75Response regulator receiver domain protein n=3 Tax... [more]
A0A517REX2_9PLAN2.810e-2562.34Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
A0A517WVA7_9PLAN1.660e-2460.27Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A518IBQ9_9PLAN1.390e-2259.21Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A6CCL8_9PLAN1.430e-2249.37Response regulator receiver protein n=7 Tax=Planct... [more]
A0A517V8T0_9PLAN1.090e-1950.68Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
UPI001991CC0F5.310e-1241.33Response regulator transcription factor n=1 Tax=Ca... [more]
A0A517ZPN0_9PLAN6.240e-1250.72Uncharacterized protein n=2 Tax=Symmachiella dynat... [more]
UPI001260B7E12.600e-1144.93response regulator n=1 Tax=Tautonia marina TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97128contigM-pyrifera_M_contig97128:2..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog575540.Isop_0648
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RESPONSE REGULATOR receiver
EggNOG OGs2J1NZ@203682,COG0745@1,COG0745@2
COG Functional cat.KT
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.7322035-CDS-M-pyrifera_M_contig97128:1..2441622816887.7322035-CDS-M-pyrifera_M_contig97128:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97128 2..244 +
1692278237.3555124-CDS-M-pyrifera_M_contig97128:1..2441692278237.3555124-CDS-M-pyrifera_M_contig97128:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97128 2..244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97128.22372.1prot_M-pyrifera_M_contig97128.22372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97128 2..244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97128.22372.1

>prot_M-pyrifera_M_contig97128.22372.1 ID=prot_M-pyrifera_M_contig97128.22372.1|Name=mRNA_M-pyrifera_M_contig97128.22372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
LTNEFPQLLIIDLNQPEIDWELLTRTMQPYPQLTSIAYGPHVDTETLQQA
RDAGCDQVLPRSQFSANLPRLLQTAFSTDD*
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mRNA from alignment at M-pyrifera_M_contig97128:2..244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97128.22372.1 ID=mRNA_M-pyrifera_M_contig97128.22372.1|Name=mRNA_M-pyrifera_M_contig97128.22372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig97128:2..244+ (Macrocystis pyrifera P11B4 male)
CTGACAAACGAGTTCCCTCAACTGCTGATCATTGATTTAAATCAGCCGGA AATTGACTGGGAACTACTGACCCGAACGATGCAGCCATATCCGCAATTGA CCAGCATCGCATACGGACCGCACGTCGACACAGAAACACTTCAGCAGGCC AGGGATGCAGGCTGTGACCAGGTTCTGCCACGGAGCCAGTTCTCTGCGAA TCTCCCGCGATTACTGCAGACAGCATTCTCGACAGACGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97128:2..244+

>mRNA_M-pyrifera_M_contig97128.22372.1 ID=mRNA_M-pyrifera_M_contig97128.22372.1|Name=mRNA_M-pyrifera_M_contig97128.22372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig97128:2..244+ (Macrocystis pyrifera P11B4 male)
CTGACAAACGAGTTCCCTCAACTGCTGATCATTGATTTAAATCAGCCGGA
AATTGACTGGGAACTACTGACCCGAACGATGCAGCCATATCCGCAATTGA
CCAGCATCGCATACGGACCGCACGTCGACACAGAAACACTTCAGCAGGCC
AGGGATGCAGGCTGTGACCAGGTTCTGCCACGGAGCCAGTTCTCTGCGAA
TCTCCCGCGATTACTGCAGACAGCATTCTCGACAGACGATTAGCTGACAA
ACGAGTTCCCTCAACTGCTGATCATTGATTTAAATCAGCCGGAAATTGAC
TGGGAACTACTGACCCGAACGATGCAGCCATATCCGCAATTGACCAGCAT
CGCATACGGACCGCACGTCGACACAGAAACACTTCAGCAGGCCAGGGATG
CAGGCTGTGACCAGGTTCTGCCACGGAGCCAGTTCTCTGCGAATCTCCCG
CGATTACTGCAGACAGCATTCTCGACAGACGATTAG
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