mRNA_M-pyrifera_M_contig110643.2237.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110643.2237.1
Unique NamemRNA_M-pyrifera_M_contig110643.2237.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Match: A0A1V9YGC1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGC1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.890e-22
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:    7 LVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAVGKGPSKHLLFSGAWDRTVKVWPMRANGGNPTP-VATLDGHYGRVASIDVTQSGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFVSCSESGQVRVWPLPGAKSEWDDRF 522
            L + G DHA+ +W+     L G TL+    +    P +H + +S ++ G+G S HLLFSG WD T+KVW + A    PT  +  L GH GR++S+ VT+ G  LVS + D T  +     P F  L  Y+  + DG  +++A G +   +  + G +R+WPL  A    D  +
Sbjct:  570 LATCGNDHAIKIWR-----LRGHTLSEACHI----PDAHASVISCLSWGRGASSHLLFSGGWDHTIKVWDLTAVARAPTAAIGALMGHKGRLSSLQVTEDGQLLVSTAADGTTKLWQAVAP-FQLLCTYVG-AVDGGASSLAVGRNIIATGYDDGMIRIWPLMRADGSVDPEY 731
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BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Match: A0A067CRH4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRH4_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 6.020e-20
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 1 
Query:    7 LVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAVGKGPSKHLLFSGAWDRTVKVWPMRANGGNPT-PVATLDGHYGRVASIDVTQSGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFVSCSESGQVRVWPLPGAKSEWDDRF 522
            L + G DHA+ LW+     L G  L+     G   P +H + +S +  GK  S HLLFSG WD T+KVW +  +   P+ P+ TL GH GR++S+ VT  G  LVS + D T  +     P F  L  Y+  + +G  +++A G +   +  + G +RVWPL  +    D  +
Sbjct:  552 LATCGNDHAIKLWR-----LRGHALSE----GVLIPDAHLSVISCLTWGKHASSHLLFSGGWDHTIKVWDLTVDTRAPSAPIGTLHGHKGRLSSLQVTDDGQLLVSTAADGTTKLWQAVAP-FQLLCTYVG-AVEGGASSLAVGRNIIATGYDDGMIRVWPLMRSDGSVDAEY 713
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110643.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1V9YGC1_9STRA5.890e-2234.68Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CRH4_SAPPC6.020e-2034.68Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110643contigM-pyrifera_M_contig110643:73..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue8e-19
Seed eggNOG ortholog157072.XP_008869024.1
Preferred nameWDR90
KEGG koko:K11127,ko:K12602,ko:K14855
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsKOG0271@1,KOG0271@2759,KOG4155@1,KOG4155@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko03032
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.3528829-CDS-M-pyrifera_M_contig110643:72..5941622815618.3528829-CDS-M-pyrifera_M_contig110643:72..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110643 73..594 -
1692277490.0569704-CDS-M-pyrifera_M_contig110643:72..5941692277490.0569704-CDS-M-pyrifera_M_contig110643:72..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110643 73..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110643.2237.1prot_M-pyrifera_M_contig110643.2237.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110643 73..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110643.2237.1

>prot_M-pyrifera_M_contig110643.2237.1 ID=prot_M-pyrifera_M_contig110643.2237.1|Name=mRNA_M-pyrifera_M_contig110643.2237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
PLLVSGGLDHAVCLWQPAKSPLTGWTLNRLWRVGSGDPGSHTARVSAVAV
GKGPSKHLLFSGAWDRTVKVWPMRANGGNPTPVATLDGHYGRVASIDVTQ
SGLHLVSASPDMTCIVRSTKQPAFAPLARYISLSADGAITTIAAGLDSFV
SCSESGQVRVWPLPGAKSEWDDRF
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mRNA from alignment at M-pyrifera_M_contig110643:73..594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110643.2237.1 ID=mRNA_M-pyrifera_M_contig110643.2237.1|Name=mRNA_M-pyrifera_M_contig110643.2237.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig110643:73..594- (Macrocystis pyrifera P11B4 male)
CCTCTGCTTGTGAGTGGTGGTCTTGACCACGCCGTGTGTTTGTGGCAACC
GGCCAAATCTCCGCTCACGGGTTGGACCCTCAATCGCCTCTGGCGTGTGG
GTTCTGGGGACCCTGGCTCTCACACTGCCCGCGTTTCCGCGGTGGCAGTA
GGAAAAGGGCCTTCCAAACACCTGTTGTTTTCTGGGGCCTGGGACCGTAC
CGTCAAGGTGTGGCCGATGCGGGCCAATGGAGGAAACCCCACGCCTGTCG
CCACGTTGGACGGGCACTATGGCCGTGTGGCGTCCATCGACGTGACACAA
TCAGGGTTGCACCTCGTCTCAGCGTCTCCAGATATGACGTGCATCGTCCG
TTCCACGAAACAGCCGGCATTCGCTCCTCTGGCGCGCTACATTTCGCTCT
CGGCCGATGGCGCCATCACCACCATTGCTGCTGGGCTCGATTCCTTCGTC
TCCTGCTCTGAAAGCGGGCAAGTTCGAGTCTGGCCCCTGCCAGGTGCCAA
GAGCGAGTGGGACGACCGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110643:73..594-

>mRNA_M-pyrifera_M_contig110643.2237.1 ID=mRNA_M-pyrifera_M_contig110643.2237.1|Name=mRNA_M-pyrifera_M_contig110643.2237.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig110643:73..594- (Macrocystis pyrifera P11B4 male)
CCTCTGCTTGTGAGTGGTGGTCTTGACCACGCCGTGTGTTTGTGGCAACC
GGCCAAATCTCCGCTCACGGGTTGGACCCTCAATCGCCTCTGGCGTGTGG
GTTCTGGGGACCCTGGCTCTCACACTGCCCGCGTTTCCGCGGTGGCAGTA
GGAAAAGGGCCTTCCAAACACCTGTTGTTTTCTGGGGCCTGGGACCGTAC
CGTCAAGGTGTGGCCGATGCGGGCCAATGGAGGAAACCCCACGCCTGTCG
CCACGTTGGACGGGCACTATGGCCGTGTGGCGTCCATCGACGTGACACAA
TCAGGGTTGCACCTCGTCTCAGCGTCTCCAGATATGACGTGCATCGTCCG
TTCCACGAAACAGCCGGCATTCGCTCCTCTGGCGCGCTACATTTCGCTCT
CGGCCGATGGCGCCATCACCACCATTGCTGCTGGGCTCGATTCCTTCGTC
TCCTGCTCTGAAAGCGGGCAAGTTCGAGTCTGGCCCCTGCCAGGTGCCAA
GAGCGAGTGGGACGACCGCTTCCCTCTGCTTGTGAGTGGTGGTCTTGACC
ACGCCGTGTGTTTGTGGCAACCGGCCAAATCTCCGCTCACGGGTTGGACC
CTCAATCGCCTCTGGCGTGTGGGTTCTGGGGACCCTGGCTCTCACACTGC
CCGCGTTTCCGCGGTGGCAGTAGGAAAAGGGCCTTCCAAACACCTGTTGT
TTTCTGGGGCCTGGGACCGTACCGTCAAGGTGTGGCCGATGCGGGCCAAT
GGAGGAAACCCCACGCCTGTCGCCACGTTGGACGGGCACTATGGCCGTGT
GGCGTCCATCGACGTGACACAATCAGGGTTGCACCTCGTCTCAGCGTCTC
CAGATATGACGTGCATCGTCCGTTCCACGAAACAGCCGGCATTCGCTCCT
CTGGCGCGCTACATTTCGCTCTCGGCCGATGGCGCCATCACCACCATTGC
TGCTGGGCTCGATTCCTTCGTCTCCTGCTCTGAAAGCGGGCAAGTTCGAG
TCTGGCCCCTGCCAGGTGCCAAGAGCGAGTGGGACGACCGCTTC
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