mRNA_M-pyrifera_M_contig97109.22366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97109.22366.1
Unique NamemRNA_M-pyrifera_M_contig97109.22366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Match: X6NF01_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NF01_RETFI)

HSP 1 Score: 57.0 bits (136), Expect = 5.720e-8
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLARHLDARYALVDVR 183
            +KQ + +DVVIGLHGAGL+   +  PG +L+EL+  Y      FAN+A  +   Y   DVR
Sbjct:  176 MKQFYASDVVIGLHGAGLTNILYTKPGTILIELKVPYGYAWGSFANIASQMGLAYYSADVR 236
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BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Match: A0A813DF47_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DF47_POLGL)

HSP 1 Score: 50.4 bits (119), Expect = 1.190e-5
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLA 144
            ++ L +ADV+IGLHGAGL+   +  P ALLVELR  Y     LF N+A
Sbjct:  211 VQSLLSADVLIGLHGAGLANALYARPDALLVELRGSYAADNRLFVNVA 258
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BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Match: A0A813H4M0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H4M0_POLGL)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLA 144
            ++ L +ADV+IGLHGAGL+   +  P ALLVELR  Y     LF N+A
Sbjct:  181 VQSLLSADVLIGLHGAGLANALYARPDALLVELRGSYAADNRLFVNVA 228
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BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Match: A0A0D9NHW2_METAN (GH18 domain-containing protein n=1 Tax=Metarhizium anisopliae BRIP 53293 TaxID=1291518 RepID=A0A0D9NHW2_METAN)

HSP 1 Score: 48.1 bits (113), Expect = 7.920e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLARHLDARY 165
            LK +   D++IG+HGAGL++  FLPPG+ ++E+    F     F NLA+ LD +Y
Sbjct:  375 LKIVCETDLLIGVHGAGLTHTMFLPPGSAVIEILPGNFAHMG-FRNLAQILDHKY 428
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BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Match: A0A388L247_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L247_CHABU)

HSP 1 Score: 48.1 bits (113), Expect = 7.940e-5
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLARHLDARYALVDVR 183
            ++ + +A +VIG+HGA LSY   + P + L+EL    ++    FA  AR+   RY  V VR
Sbjct:  779 IRVIRDASIVIGVHGASLSYTLLMDPRSTLIELMPPEYRGRTHFAMFARYAGVRYVRVPVR 839
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97109.22366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
X6NF01_RETFI5.720e-844.26Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A813DF47_POLGL1.190e-552.08Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813H4M0_POLGL1.210e-552.08Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A0D9NHW2_METAN7.920e-543.64GH18 domain-containing protein n=1 Tax=Metarhizium... [more]
A0A388L247_CHABU7.940e-537.70Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97109contigM-pyrifera_M_contig97109:257..439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.3470554-CDS-M-pyrifera_M_contig97109:256..4391622816887.3470554-CDS-M-pyrifera_M_contig97109:256..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97109 257..439 -
1692278237.0819707-CDS-M-pyrifera_M_contig97109:256..4391692278237.0819707-CDS-M-pyrifera_M_contig97109:256..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97109 257..439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97109.22366.1prot_M-pyrifera_M_contig97109.22366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97109 257..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97109.22366.1

>prot_M-pyrifera_M_contig97109.22366.1 ID=prot_M-pyrifera_M_contig97109.22366.1|Name=mRNA_M-pyrifera_M_contig97109.22366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
LKQLWNADVVIGLHGAGLSYFSFLPPGALLVELRTRYFKPEPLFANLARH
LDARYALVDVR
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mRNA from alignment at M-pyrifera_M_contig97109:257..439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97109.22366.1 ID=mRNA_M-pyrifera_M_contig97109.22366.1|Name=mRNA_M-pyrifera_M_contig97109.22366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig97109:257..439- (Macrocystis pyrifera P11B4 male)
CTGAAGCAGTTGTGGAACGCCGATGTCGTCATCGGCTTACATGGGGCTGG
ATTATCGTACTTCTCCTTCCTCCCCCCTGGCGCCCTGCTCGTAGAGCTAC
GCACCCGCTATTTCAAGCCGGAGCCGCTGTTTGCAAACCTGGCACGCCAC
CTAGATGCTCGGTATGCGCTGGTGGATGTGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97109:257..439-

>mRNA_M-pyrifera_M_contig97109.22366.1 ID=mRNA_M-pyrifera_M_contig97109.22366.1|Name=mRNA_M-pyrifera_M_contig97109.22366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig97109:257..439- (Macrocystis pyrifera P11B4 male)
CTGAAGCAGTTGTGGAACGCCGATGTCGTCATCGGCTTACATGGGGCTGG
ATTATCGTACTTCTCCTTCCTCCCCCCTGGCGCCCTGCTCGTAGAGCTAC
GCACCCGCTATTTCAAGCCGGAGCCGCTGTTTGCAAACCTGGCACGCCAC
CTAGATGCTCGGTATGCGCTGGTGGATGTGCGTCTGAAGCAGTTGTGGAA
CGCCGATGTCGTCATCGGCTTACATGGGGCTGGATTATCGTACTTCTCCT
TCCTCCCCCCTGGCGCCCTGCTCGTAGAGCTACGCACCCGCTATTTCAAG
CCGGAGCCGCTGTTTGCAAACCTGGCACGCCACCTAGATGCTCGGTATGC
GCTGGTGGATGTGCGT
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