mRNA_M-pyrifera_M_contig9707.22363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9707.22363.1
Unique NamemRNA_M-pyrifera_M_contig9707.22363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: D7FY41_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY41_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.930e-30
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 MEDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFESEE-EGEEKNAE--AESIVDSLA 216
            MED++CAICLV+Y+AEDELRKLPC HAFHK C+DSWL VNASCPNCRARCFE E+ EGEEK A+     + D+LA
Sbjct:   49 MEDDACAICLVEYEAEDELRKLPCRHAFHKTCVDSWLAVNASCPNCRARCFEEEDGEGEEKIADDAPAPVGDNLA 123
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.100e-28
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 MEDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFESEEEGEEKNAE--AESIVDSLA 216
            MED++CAIC+VDY+AEDELRKLPC HAFHK C+DSWL VNASCPNCRARCFE + EGEEK A+     + D+LA
Sbjct:  358 MEDDACAICIVDYEAEDELRKLPCRHAFHKTCVDSWLAVNASCPNCRARCFEEDGEGEEKIADDAPAPVGDNLA 431
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A7S3XQH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH4_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 6.430e-16
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 MEDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFESEEEGEEKNAE 189
            +E+ +C ICL +Y+  +ELR LPC H+FHK+C+D WL VNA+CPNCR    + E+E E K  E
Sbjct:  216 IEEPTCPICLNEYENGEELRSLPCKHSFHKKCVDEWLLVNATCPNCRTTILDEEQEEEAKLGE 278
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A8K1CPU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPU5_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 2.580e-15
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFE 156
            ED+SC ICL DY+ + ELR LPC H FHKEC+D WL VN++CP CR   +E
Sbjct:  252 EDSSCCICLNDYEPQQELRVLPCEHHFHKECVDEWLIVNSTCPTCRKSIYE 302
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: I3SYV1_LOTJA (RING-type domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SYV1_LOTJA)

HSP 1 Score: 74.3 bits (181), Expect = 9.290e-15
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFES 159
            ED  C ICL  Y+  DELR+LPC+H FHK+C+D WL +NASCP C++   E+
Sbjct:   81 EDAVCCICLATYENNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEIGEN 132
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: UPI000C1D0794 (E3 ubiquitin-protein ligase At4g11680-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D0794)

HSP 1 Score: 74.7 bits (182), Expect = 1.920e-14
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFES 159
            ED  C ICL  Y   DELR+LPC+H FHKEC+D WL +NASCP C+A   E+
Sbjct:  127 EDAVCCICLAKYVNNDELRELPCSHFFHKECVDKWLKINASCPLCKAEVGET 178
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A699K2M5_TANCI (E3 ubiquitin-protein ligase At1g63170-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699K2M5_TANCI)

HSP 1 Score: 71.2 bits (173), Expect = 1.960e-14
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 CAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFES 159
            C ICL  Y   DELR+LPC H FHK+C+D WL +NASCP C++   ES
Sbjct:    2 CCICLAKYANNDELRELPCTHFFHKDCVDKWLKINASCPLCKSEVGES 49
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BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A4D8ZX02_SALSN (E3 ubiquitin-protein ligase RNF38/44 n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8ZX02_SALSN)

HSP 1 Score: 77.0 bits (188), Expect = 2.270e-14
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFES 159
            ED SC ICL  Y   DELR+LPC+H FHK+C+D WL +NASCP C+A   E+
Sbjct:  361 EDASCCICLAKYGNNDELRELPCSHLFHKDCVDKWLKINASCPLCKAEVGET 412
[Close]
BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A662XM18_9STRA (RING-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM18_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.400e-14
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARCFESEEEGEEKNAEAESIVDSL 213
            ED  C ICL DY+    LR LPC+H FHK+C+D WL VN++CP CR   F++  +G   NA A S  D L
Sbjct:  286 EDACCCICLNDYEPAQALRVLPCDHHFHKDCVDEWLLVNSTCPTCRKSIFDTASDGS-SNAPATSEEDML 354
[Close]
BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Match: A0A7S2UIF9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIF9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.640e-14
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 EDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCR 141
            +D+SC ICLV+Y+  DELR LPC H  HKECLD WL+ NASCP CR
Sbjct:  866 DDDSCPICLVEYEKGDELRALPCKHEMHKECLDQWLSSNASCPACR 911
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9707.22363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY41_ECTSI1.930e-3072.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPD9_9PHAE1.100e-2871.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3XQH4_HETAK6.430e-1652.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1CPU5_PYTOL2.580e-1560.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I3SYV1_LOTJA9.290e-1555.77RING-type domain-containing protein n=1 Tax=Lotus ... [more]
UPI000C1D07941.920e-1459.62E3 ubiquitin-protein ligase At4g11680-like n=1 Tax... [more]
A0A699K2M5_TANCI1.960e-1458.33E3 ubiquitin-protein ligase At1g63170-like (Fragme... [more]
A0A4D8ZX02_SALSN2.270e-1459.62E3 ubiquitin-protein ligase RNF38/44 n=4 Tax=Salvi... [more]
A0A662XM18_9STRA2.400e-1450.00RING-type domain-containing protein n=2 Tax=Nothop... [more]
A0A7S2UIF9_9STRA2.640e-1467.39Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9707contigM-pyrifera_M_contig9707:7564..8656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D7FY41
KEGG koko:K10635
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_007010.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size304
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9707.22363.1prot_M-pyrifera_M_contig9707.22363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9707 7649..8656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.04493-UTR-M-pyrifera_M_contig9707:7563..76481622816887.04493-UTR-M-pyrifera_M_contig9707:7563..7648Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9707 7564..7648 -
1692278236.8855784-UTR-M-pyrifera_M_contig9707:7563..76481692278236.8855784-UTR-M-pyrifera_M_contig9707:7563..7648Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9707 7564..7648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.0583196-CDS-M-pyrifera_M_contig9707:7648..77741622816887.0583196-CDS-M-pyrifera_M_contig9707:7648..7774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9707 7649..7774 -
1692278236.8996089-CDS-M-pyrifera_M_contig9707:7648..77741692278236.8996089-CDS-M-pyrifera_M_contig9707:7648..7774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9707 7649..7774 -
1622816887.0719516-CDS-M-pyrifera_M_contig9707:8563..86561622816887.0719516-CDS-M-pyrifera_M_contig9707:8563..8656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9707 8564..8656 -
1692278236.9106667-CDS-M-pyrifera_M_contig9707:8563..86561692278236.9106667-CDS-M-pyrifera_M_contig9707:8563..8656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9707 8564..8656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9707.22363.1

>prot_M-pyrifera_M_contig9707.22363.1 ID=prot_M-pyrifera_M_contig9707.22363.1|Name=mRNA_M-pyrifera_M_contig9707.22363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MEDNSCAICLVDYDAEDELRKLPCNHAFHKECLDSWLTVNASCPNCRARC
FESEEEGEEKNAEAESIVDSLA*
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mRNA from alignment at M-pyrifera_M_contig9707:7564..8656-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9707.22363.1 ID=mRNA_M-pyrifera_M_contig9707.22363.1|Name=mRNA_M-pyrifera_M_contig9707.22363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1093bp|location=Sequence derived from alignment at M-pyrifera_M_contig9707:7564..8656- (Macrocystis pyrifera P11B4 male)
ATGGAAGACAATTCGTGTGCCATCTGCCTGGTGGACTACGACGCCGAGGA
CGAGCTGAGGAAGCTTCCGTGCAACCACGCCTTCCACAAGGAGGCGAGTG
GTCGGGTTGTGCCGTGCCGGGGTTTTCTTTTCGCTCAAATTCTTCTTGTT
ATTGTCATGTCTTGGCATGAAACCGTTTCTTCCACCAAACGGCATCAGCA
CACCCAGTGTCCGTTTTACTCGTGGGCGGTATCGTGGTGTTGTTAGGCCT
TCATGGGGCGCTGAGAGTGTGGCGTGGCGTCAGCTGCAAGAGTTGAAGGA
GGCCTGGACCATTTTGACTGGGAGCTACTGGTTGATGGATTGGGGGGGCG
GGGGCGGGTACGAGGTAACTACCTGGTATCAAAGGAGAAGGCTTATGGCA
GTTGTCTCGTGTCTGATGCCATAATAAACGTACTGCTACATATACGGCGT
GTCTGCGCGCAGCGTTTTGAAGACAACAATTGGACCTAACCCCTTCGAAT
ACCCCGTAATACGGACCGAAACAATGGTTGGTAAGTTTGGTGATATTGCC
GGTCTTCGGACAGCGTTAACGCCCAGCGGCAGTATGTAGGGGTAGGATCG
ACCATGTTGCGCCCGTGCAGTACAACTCCTTGCATTCAACCATTGTAACT
CGGGACACCGAATCGAATCATCCCCCAATCACAACCGCGCAGTGACCGTT
GCTGTGTAATTGCTTTTTTTCAGTCAGTGTCCCCCTCTACGGTCCTAGGA
GGGTCAAGGTTCATGATGCACTCGCGGACATCTCTGCACTTGCCACCCGA
CACCTTCCCCTAACTGCCGCTCCCTCCCTCCTTCCCTCCATCTCTCCGAC
CCCGTCTCCTCTTGCCCCTCCCCCCCACGCAGTGCTTGGACAGTTGGTTG
ACCGTGAACGCAAGCTGCCCGAATTGCCGGGCTCGCTGCTTCGAGTCCGA
AGAAGAAGGGGAAGAAAAGAACGCGGAAGCCGAATCTATCGTGGATAGCC
TTGCATGAGAGAACACCGCACATAGGATACCGTACGCATACACCTTTCGG
AGCAGTCAGCGCCTCGGTAATATTTTTGCGGCTTGCACGCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9707:7564..8656-

>mRNA_M-pyrifera_M_contig9707.22363.1 ID=mRNA_M-pyrifera_M_contig9707.22363.1|Name=mRNA_M-pyrifera_M_contig9707.22363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig9707:7564..8656- (Macrocystis pyrifera P11B4 male)
ATGGAAGACAATTCGTGTGCCATCTGCCTGGTGGACTACGACGCCGAGGA
CGAGCTGAGGAAGCTTCCGTGCAACCACGCCTTCCACAAGGAGATGGAAG
ACAATTCGTGTGCCATCTGCCTGGTGGACTACGACGCCGAGGACGAGCTG
AGGAAGCTTCCGTGCAACCACGCCTTCCACAAGGAGTGCTTGGACAGTTG
GTTGACCGTGAACGCAAGCTGCCCGAATTGCCGGGCTCGCTGCTTCGAGT
CCGAAGAAGAAGGGGAAGAAAAGAACGCGGAAGCCGAATCTATCGTGGAT
AGCCTTGCATGATGCTTGGACAGTTGGTTGACCGTGAACGCAAGCTGCCC
GAATTGCCGGGCTCGCTGCTTCGAGTCCGAAGAAGAAGGGGAAGAAAAGA
ACGCGGAAGCCGAATCTATCGTGGATAGCCTTGCATGA
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