prot_M-pyrifera_M_contig97061.22361.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig97061.22361.1
Unique Nameprot_M-pyrifera_M_contig97061.22361.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length89
Homology
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7J7TS37_RHIFE (SEH1 like nucleoporin n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A7J7TS37_RHIFE)

HSP 1 Score: 111 bits (278), Expect = 4.100e-30
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV+FDF GRR+ATCSSD+ ++V+D+ + G+W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: UPI001643D874 (nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI001643D874)

HSP 1 Score: 110 bits (274), Expect = 2.040e-29
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ + G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A674CKQ6_SALTR (SEH1 like nucleoporin n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674CKQ6_SALTR)

HSP 1 Score: 112 bits (280), Expect = 2.790e-29
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: UPI000CEAB35F (nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CEAB35F)

HSP 1 Score: 108 bits (270), Expect = 4.150e-29
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVW 83
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VW
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVW 86          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A674AH81_SALTR (Nucleoporin SEH1 n=6 Tax=Salmoninae TaxID=504568 RepID=A0A674AH81_SALTR)

HSP 1 Score: 111 bits (277), Expect = 4.810e-29
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ ++G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: Q7ZU38_DANRE (SEH1-like (S. cerevisiae) n=3 Tax=Clupeocephala TaxID=186625 RepID=Q7ZU38_DANRE)

HSP 1 Score: 111 bits (277), Expect = 5.640e-29
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7L4JE61_9PASS (SEH1 protein (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7L4JE61_9PASS)

HSP 1 Score: 111 bits (277), Expect = 1.040e-28
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV+FDF GRR+ATCSSD+ ++V+D+ + G+W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HRDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A6P6LJG8_CARAU (nucleoporin SEH1-like n=35 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6LJG8_CARAU)

HSP 1 Score: 114 bits (285), Expect = 1.220e-28
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ I+V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T IVWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSIKVWDKGDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAIVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A6Q2XQ04_ESOLU (Nucleoporin SEH1 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2XQ04_ESOLU)

HSP 1 Score: 110 bits (275), Expect = 1.320e-28
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    9 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ + G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWICTANWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88          
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7S4IH72_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH72_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.420e-28
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 0
Query:    1 VFEEFDTLHSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTST-AWEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 85
            V ++ DT H D +HD+A+DF+G+R+ATCSSDR I+V+D++    WT T +WEAH   +W+VCW+HP+FGQV+ASC  D  V +WEE
Sbjct:    5 VIQKIDTNHKDLIHDLAYDFYGKRLATCSSDRFIRVWDKNS--EWTQTCSWEAHSGSIWKVCWAHPEFGQVIASCGFDGQVYIWEE 88          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7TS37_RHIFE4.100e-3060.26SEH1 like nucleoporin n=2 Tax=Boreoeutheria TaxID=... [more]
UPI001643D8742.040e-2958.97nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi ... [more]
A0A674CKQ6_SALTR2.790e-2960.26SEH1 like nucleoporin n=1 Tax=Salmo trutta TaxID=8... [more]
UPI000CEAB35F4.150e-2959.21nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=... [more]
A0A674AH81_SALTR4.810e-2958.97Nucleoporin SEH1 n=6 Tax=Salmoninae TaxID=504568 R... [more]
Q7ZU38_DANRE5.640e-2960.26SEH1-like (S. cerevisiae) n=3 Tax=Clupeocephala Ta... [more]
A0A7L4JE61_9PASS1.040e-2860.26SEH1 protein (Fragment) n=2 Tax=Amniota TaxID=3252... [more]
A0A6P6LJG8_CARAU1.220e-2862.82nucleoporin SEH1-like n=35 Tax=Clupeocephala TaxID... [more]
A0A6Q2XQ04_ESOLU1.320e-2858.97Nucleoporin SEH1 n=1 Tax=Esox lucius TaxID=8010 Re... [more]
A0A7S4IH72_9EUKA1.420e-2854.65Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 1..38
e-value: 0.014
score: 24.6
coord: 43..84
e-value: 1.5E-4
score: 31.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 9..38
e-value: 0.0052
score: 17.6
coord: 50..83
e-value: 0.0025
score: 18.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 50..84
score: 8.971
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..89
e-value: 1.2E-30
score: 108.4
IPR037363Sec13/Seh1 familyPANTHERPTHR11024NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERcoord: 3..85
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 6..89
score: 12.71
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 8..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97061contigM-pyrifera_M_contig97061:376..642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97061.22361.1mRNA_M-pyrifera_M_contig97061.22361.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig97061 376..642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig97061.22361.1 ID=prot_M-pyrifera_M_contig97061.22361.1|Name=mRNA_M-pyrifera_M_contig97061.22361.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VFEEFDTLHSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTAW
EAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEERGTC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037363Sec13/Seh1_fam
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf