mRNA_M-pyrifera_M_contig97061.22361.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97061.22361.1
Unique NamemRNA_M-pyrifera_M_contig97061.22361.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7J7TS37_RHIFE (SEH1 like nucleoporin n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A7J7TS37_RHIFE)

HSP 1 Score: 111 bits (278), Expect = 4.100e-30
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV+FDF GRR+ATCSSD+ ++V+D+ + G+W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: UPI001643D874 (nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI001643D874)

HSP 1 Score: 110 bits (274), Expect = 2.040e-29
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ + G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A674CKQ6_SALTR (SEH1 like nucleoporin n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674CKQ6_SALTR)

HSP 1 Score: 112 bits (280), Expect = 2.790e-29
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: UPI000CEAB35F (nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CEAB35F)

HSP 1 Score: 108 bits (270), Expect = 4.150e-29
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVW 249
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VW
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVW 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A674AH81_SALTR (Nucleoporin SEH1 n=6 Tax=Salmoninae TaxID=504568 RepID=A0A674AH81_SALTR)

HSP 1 Score: 111 bits (277), Expect = 4.810e-29
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ ++G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: Q7ZU38_DANRE (SEH1-like (S. cerevisiae) n=3 Tax=Clupeocephala TaxID=186625 RepID=Q7ZU38_DANRE)

HSP 1 Score: 111 bits (277), Expect = 5.640e-29
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7L4JE61_9PASS (SEH1 protein (Fragment) n=2 Tax=Amniota TaxID=32524 RepID=A0A7L4JE61_9PASS)

HSP 1 Score: 111 bits (277), Expect = 1.040e-28
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV+FDF GRR+ATCSSD+ ++V+D+ + G+W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HRDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A6P6LJG8_CARAU (nucleoporin SEH1-like n=35 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6LJG8_CARAU)

HSP 1 Score: 114 bits (285), Expect = 1.220e-28
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ I+V+D+ D G W  TA W+ H   VWRV W+HP+FGQVLASCS D T IVWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSIKVWDKGDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAIVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A6Q2XQ04_ESOLU (Nucleoporin SEH1 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2XQ04_ESOLU)

HSP 1 Score: 110 bits (275), Expect = 1.320e-28
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   25 HSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTA-WEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            H D +HDV++DF GRR+ATCSSD+ ++V+D+ + G W  TA W+ H   VWRV W+HP+FGQVLASCS D T  VWEE
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWICTANWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Match: A0A7S4IH72_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH72_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.420e-28
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 VFEEFDTLHSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTST-AWEAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEE 255
            V ++ DT H D +HD+A+DF+G+R+ATCSSDR I+V+D++    WT T +WEAH   +W+VCW+HP+FGQV+ASC  D  V +WEE
Sbjct:    5 VIQKIDTNHKDLIHDLAYDFYGKRLATCSSDRFIRVWDKNS--EWTQTCSWEAHSGSIWKVCWAHPEFGQVIASCGFDGQVYIWEE 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97061.22361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7TS37_RHIFE4.100e-3060.26SEH1 like nucleoporin n=2 Tax=Boreoeutheria TaxID=... [more]
UPI001643D8742.040e-2958.97nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi ... [more]
A0A674CKQ6_SALTR2.790e-2960.26SEH1 like nucleoporin n=1 Tax=Salmo trutta TaxID=8... [more]
UPI000CEAB35F4.150e-2959.21nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=... [more]
A0A674AH81_SALTR4.810e-2958.97Nucleoporin SEH1 n=6 Tax=Salmoninae TaxID=504568 R... [more]
Q7ZU38_DANRE5.640e-2960.26SEH1-like (S. cerevisiae) n=3 Tax=Clupeocephala Ta... [more]
A0A7L4JE61_9PASS1.040e-2860.26SEH1 protein (Fragment) n=2 Tax=Amniota TaxID=3252... [more]
A0A6P6LJG8_CARAU1.220e-2862.82nucleoporin SEH1-like n=35 Tax=Clupeocephala TaxID... [more]
A0A6Q2XQ04_ESOLU1.320e-2858.97Nucleoporin SEH1 n=1 Tax=Esox lucius TaxID=8010 Re... [more]
A0A7S4IH72_9EUKA1.420e-2854.65Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97061contigM-pyrifera_M_contig97061:376..642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score112.5
Seed ortholog evalue1e-22
Seed eggNOG ortholog7719.XP_002132055.2
Preferred nameSEH1L
KEGG koko:K14299,ko:K16725
KEGG TC1.I.1
KEGG Pathwayko03013,ko04150,map03013,map04150
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000323,GO:0000819,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0006950,GO:0006996,GO:0006997,GO:0006999,GO:0007049,GO:0007059,GO:0007080,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007346,GO:0008150,GO:0008361,GO:0008608,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010506,GO:0010507,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016043,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030154,GO:0031080,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0032006,GO:0032008,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045793,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051445,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0090066,GO:0098588,GO:0098805,GO:0098813,GO:0098852,GO:0140014,GO:1902531,GO:1902533,GO:1903047,GO:1903432,GO:1990928,GO:2000241
EggNOG free text desc.positive regulation of TORC1 signaling
EggNOG OGs38GGF@33154,3BFZI@33208,3CUQR@33213,480QJ@7711,KOG2445@1,KOG2445@2759
COG Functional cat.UY
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03019,ko03036
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.9559517-CDS-M-pyrifera_M_contig97061:375..6421622816886.9559517-CDS-M-pyrifera_M_contig97061:375..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97061 376..642 +
1692278236.8480709-CDS-M-pyrifera_M_contig97061:375..6421692278236.8480709-CDS-M-pyrifera_M_contig97061:375..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97061 376..642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97061.22361.1prot_M-pyrifera_M_contig97061.22361.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97061 376..642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97061.22361.1

>prot_M-pyrifera_M_contig97061.22361.1 ID=prot_M-pyrifera_M_contig97061.22361.1|Name=mRNA_M-pyrifera_M_contig97061.22361.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VFEEFDTLHSDYVHDVAFDFFGRRIATCSSDRRIQVFDQDDAGNWTSTAW
EAHDSPVWRVCWSHPQFGQVLASCSTDHTVIVWEERGTC
back to top

mRNA from alignment at M-pyrifera_M_contig97061:376..642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97061.22361.1 ID=mRNA_M-pyrifera_M_contig97061.22361.1|Name=mRNA_M-pyrifera_M_contig97061.22361.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig97061:376..642+ (Macrocystis pyrifera P11B4 male)
GTGTTTGAGGAGTTCGACACGCTGCATTCCGACTACGTGCACGACGTGGC
GTTCGACTTCTTTGGGCGGCGGATCGCGACGTGCTCGTCGGACCGCCGCA
TCCAGGTGTTCGACCAGGACGACGCCGGGAACTGGACCTCCACCGCGTGG
GAGGCCCACGATTCGCCGGTCTGGCGCGTCTGCTGGAGCCACCCGCAGTT
CGGACAGGTGCTCGCGTCCTGCAGCACCGACCACACGGTCATCGTGTGGG
AGGAGCGCGGTACGTGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97061:376..642+

>mRNA_M-pyrifera_M_contig97061.22361.1 ID=mRNA_M-pyrifera_M_contig97061.22361.1|Name=mRNA_M-pyrifera_M_contig97061.22361.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig97061:376..642+ (Macrocystis pyrifera P11B4 male)
GTGTTTGAGGAGTTCGACACGCTGCATTCCGACTACGTGCACGACGTGGC
GTTCGACTTCTTTGGGCGGCGGATCGCGACGTGCTCGTCGGACCGCCGCA
TCCAGGTGTTCGACCAGGACGACGCCGGGAACTGGACCTCCACCGCGTGG
GAGGCCCACGATTCGCCGGTCTGGCGCGTCTGCTGGAGCCACCCGCAGTT
CGGACAGGTGCTCGCGTCCTGCAGCACCGACCACACGGTCATCGTGTGGG
AGGAGCGCGGTACGTGCGTGTTTGAGGAGTTCGACACGCTGCATTCCGAC
TACGTGCACGACGTGGCGTTCGACTTCTTTGGGCGGCGGATCGCGACGTG
CTCGTCGGACCGCCGCATCCAGGTGTTCGACCAGGACGACGCCGGGAACT
GGACCTCCACCGCGTGGGAGGCCCACGATTCGCCGGTCTGGCGCGTCTGC
TGGAGCCACCCGCAGTTCGGACAGGTGCTCGCGTCCTGCAGCACCGACCA
CACGGTCATCGTGTGGGAGGAGCGCGGTACGTGC
back to top