mRNA_M-pyrifera_M_contig97041.22356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97041.22356.1
Unique NamemRNA_M-pyrifera_M_contig97041.22356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A0M9EYM2_FUSLA (Nuclear transport factor 2 n=5 Tax=Fusarium sambucinum species complex TaxID=569360 RepID=A0A0M9EYM2_FUSLA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-8
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   22 AEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRG-ESILEKLASLP--ATKHELATLDVQPIDDNHALIV-VRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNYG 381
            A+  V +YY+ +D + +G     L   Y  +S+   E     G ESI EKL SLP    KH++ATLD QP +D   +I+ + G + +  E + ++F QTF +    D A  Y+   DLF   +G
Sbjct:    9 AKQFVEYYYNTFDTDRKG-----LTALYRPNSMLTFESASVLGAESIAEKLVSLPFQKVKHQVATLDAQPSNDQGGVIILITGALLIDEEQNPMNFSQTFQLQR--DQAGQYYVYNDLFKLVFG 125          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A4Q4VS33_9PEZI (Nuclear transport factor 2 n=1 Tax=Monosporascus sp. MC13-8B TaxID=2211646 RepID=A0A4Q4VS33_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 5.060e-8
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   22 AEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGE-SILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNY 378
            A+  V +YY  +D +        L   Y  +S+   E + ++G  SI+EKL  +P  A KH+L TLD QP+ +    ++V G + +  E   +S+ Q F +L  G     Y+   D+F   Y
Sbjct:    9 AKQFVDYYYQTFDSDRRN-----LSTLYRNNSMLTFESQPYQGTASIVEKLVGMPFQAVKHQLETLDAQPVVNGGVFVLVTGKLLVDEEQRPMSYTQAFQLLPEGGSYFVYN---DIFRLIY 122          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A094CN92_9PEZI (NTF2 domain-containing protein n=7 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A094CN92_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 2.410e-7
Identity = 38/126 (30.16%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   13 SGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNYG 381
            +G A+     YY+ +D +        L P Y  +S+   E     G   I+EKL+SLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F   +G
Sbjct:    5 AGIAKQFTDFYYNQFDAD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLSSLPFAKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIFKLVFG 123          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A1B8CLS2_9PEZI (NTF2-related export protein n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A1B8CLS2_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 3.460e-7
Identity = 39/123 (31.71%), Postives = 60/123 (48.78%), Query Frame = 1
Query:   22 AEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNYG 381
            AE     YY+ +D +        L P Y  +S+   E     G   I+EKLASLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F   +G
Sbjct:   19 AEQFTDFYYNQFDTD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLASLPFAKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIFKLVFG 134          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A1J1HPW1_9DIPT (NTF2-related export protein n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1HPW1_9DIPT)

HSP 1 Score: 54.7 bits (130), Expect = 8.340e-7
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   22 AEDLVTH-YYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGESILEK-LASLPATKHELATLDVQPIDDNHA----LIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNYG 381
            A++ + H YYD  D     K+   L   Y  + + V  G    G+  + K +  +P+TKH+L T+D QPI D+ A    LI V G + + G+  S +F QTFV+  T D+   +  V D F    G
Sbjct:   20 ADEFIKHIYYDHVD-----KKKPTLNKLYMDNGLLVYNGNGFNGKDNIAKFIIEMPSTKHDLTTIDAQPILDSSAGKTILIQVSGTVKIAGK-RSRAFQQTFVL--TADNNAKWKIVTDTFRLQDG 137          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A094HLN1_9PEZI (NTF2 domain-containing protein n=7 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A094HLN1_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 2.660e-6
Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   13 SGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLF 366
            +G A+     YY+ +D +        L P Y  +S+   E     G   I+EKLASLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F
Sbjct:    5 AGIAKQFTDFYYNQFDSD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLASLPFAKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIF 118          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A094FYV0_9PEZI (NTF2 domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4517 (FW-2822) TaxID=1420911 RepID=A0A094FYV0_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 6.890e-6
Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   13 SGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLF 366
            +G A+     YY+ +D +        L P Y  +S+   E     G   I+EKL+SLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F
Sbjct:   33 AGIAKQFTDFYYNQFDAD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLSSLPFAKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIF 146          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A094E521_9PEZI (NTF2 domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-103 TaxID=1420912 RepID=A0A094E521_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 9.710e-6
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   13 SGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLF 366
            +G A+     YY+ +D +        L P Y  +S+   E     G   I+EKL SLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F
Sbjct:    5 AGIAKQFTDFYYNQFDAD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLTSLPFAKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIF 118          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: A0A1B8E969_9PEZI (NTF2 domain-containing protein n=1 Tax=Pseudogymnoascus sp. 23342-1-I1 TaxID=1524831 RepID=A0A1B8E969_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 1.010e-5
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   13 SGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES-ILEKLASLP--ATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLF 366
            +G A+     YY+ +D +        L P Y  +S+   E     G   I+EKL SLP    KH+++TLD QP++    +I+V G + +  E   +++ Q F +L  G  A  Y    D+F
Sbjct:    5 AGIAKQFTDFYYNQFDTD-----RSQLAPLYRDNSMLTFESAAVAGAGPIVEKLTSLPFGKVKHQVSTLDAQPVEGGGIIILVTGALLVDEEQRPMNYSQCFQLLPDG--AGSYFIFNDIF 118          
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Match: J4C7W8_THEOR (Nuclear transport factor 2 n=2 Tax=Theileria orientalis TaxID=68886 RepID=J4C7W8_THEOR)

HSP 1 Score: 50.1 bits (118), Expect = 3.010e-5
Identity = 30/99 (30.30%), Postives = 51/99 (51.52%), Query Frame = 1
Query:   88 ALEPFYSKDSVFVIEGEEHRGES-ILEKLASLPATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQTFVVLATGDDAEPYHFVVDLFAFNYG 381
            +L  FY+ DS+   E  + +G++ ILEK+ SLP +KH L T D QP  +N  +  + G +++   +  + F   F +   G+    Y  + D+F    G
Sbjct:   26 SLAQFYTNDSMMTFEQNQFKGQTQILEKIMSLPPSKHTLVTCDCQPSPNNGIVACITGDVSLDS-NRPMKFSHVFQLFPNGNS---YFVLNDIFRLCIG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97041.22356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0M9EYM2_FUSLA1.350e-834.68Nuclear transport factor 2 n=5 Tax=Fusarium sambuc... [more]
A0A4Q4VS33_9PEZI5.060e-830.33Nuclear transport factor 2 n=1 Tax=Monosporascus s... [more]
A0A094CN92_9PEZI2.410e-730.16NTF2 domain-containing protein n=7 Tax=Pseudogymno... [more]
A0A1B8CLS2_9PEZI3.460e-731.71NTF2-related export protein n=2 Tax=unclassified P... [more]
A0A1J1HPW1_9DIPT8.340e-733.33NTF2-related export protein n=1 Tax=Clunio marinus... [more]
A0A094HLN1_9PEZI2.660e-631.40NTF2 domain-containing protein n=7 Tax=Pseudogymno... [more]
A0A094FYV0_9PEZI6.890e-630.58NTF2 domain-containing protein n=1 Tax=Pseudogymno... [more]
A0A094E521_9PEZI9.710e-630.58NTF2 domain-containing protein n=1 Tax=Pseudogymno... [more]
A0A1B8E969_9PEZI1.010e-530.58NTF2 domain-containing protein n=1 Tax=Pseudogymno... [more]
J4C7W8_THEOR3.010e-530.30Nuclear transport factor 2 n=2 Tax=Theileria orien... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97041contigM-pyrifera_M_contig97041:289..672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog29730.Gorai.005G165500.1
Preferred nameNtf2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear transport factor
EggNOG OGs37UGW@33090,3GISZ@35493,KOG2104@1,KOG2104@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.6819935-CDS-M-pyrifera_M_contig97041:288..6661622816886.6819935-CDS-M-pyrifera_M_contig97041:288..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97041 289..666 -
1692278236.7253458-CDS-M-pyrifera_M_contig97041:288..6661692278236.7253458-CDS-M-pyrifera_M_contig97041:288..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97041 289..666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.69305-UTR-M-pyrifera_M_contig97041:666..6721622816886.69305-UTR-M-pyrifera_M_contig97041:666..672Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97041 667..672 -
1692278236.735128-UTR-M-pyrifera_M_contig97041:666..6721692278236.735128-UTR-M-pyrifera_M_contig97041:666..672Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97041 667..672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97041.22356.1prot_M-pyrifera_M_contig97041.22356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97041 289..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97041.22356.1

>prot_M-pyrifera_M_contig97041.22356.1 ID=prot_M-pyrifera_M_contig97041.22356.1|Name=mRNA_M-pyrifera_M_contig97041.22356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MESGFAEDLVTHYYDVYDGNVEGKRAEALEPFYSKDSVFVIEGEEHRGES
ILEKLASLPATKHELATLDVQPIDDNHALIVVRGHITMGGEDHSLSFIQT
FVVLATGDDAEPYHFVVDLFAFNYG*
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mRNA from alignment at M-pyrifera_M_contig97041:289..672-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97041.22356.1 ID=mRNA_M-pyrifera_M_contig97041.22356.1|Name=mRNA_M-pyrifera_M_contig97041.22356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig97041:289..672- (Macrocystis pyrifera P11B4 male)
GACACGATGGAGAGCGGGTTCGCCGAGGACCTTGTGACACATTACTACGA TGTGTATGATGGAAACGTGGAAGGGAAGCGGGCAGAGGCGCTGGAACCGT TCTACTCCAAAGACTCGGTGTTCGTGATCGAAGGAGAGGAGCACCGCGGT GAGAGCATCCTCGAAAAGCTCGCCTCGCTCCCAGCGACCAAGCACGAGCT CGCAACGCTCGACGTGCAGCCAATTGACGACAATCACGCGCTCATCGTCG TCCGAGGACACATCACCATGGGCGGAGAAGACCACTCCCTCTCCTTCATC CAAACCTTCGTCGTCCTCGCCACCGGAGATGACGCAGAGCCTTACCACTT TGTCGTTGACCTCTTCGCATTCAACTACGGCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97041:289..672-

>mRNA_M-pyrifera_M_contig97041.22356.1 ID=mRNA_M-pyrifera_M_contig97041.22356.1|Name=mRNA_M-pyrifera_M_contig97041.22356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig97041:289..672- (Macrocystis pyrifera P11B4 male)
ATGGAGAGCGGGTTCGCCGAGGACCTTGTGACACATTACTACGATGTGTA
TGATGGAAACGTGGAAGGGAAGCGGGCAGAGGCGCTGGAACCGTTCTACT
CCAAAGACTCGGTGTTCGTGATCGAAGGAGAGGAGCACCGCGGTGAGAGC
ATCCTCGAAAAGCTCGCCTCGCTCCCAGCGACCAAGCACGAGCTCGCAAC
GCTCGACGTGCAGCCAATTGACGACAATCACGCGCTCATCGTCGTCCGAG
GACACATCACCATGGGCGGAGAAGACCACTCCCTCTCCTTCATCCAAACC
TTCGTCGTCCTCGCCACCGGAGATGACGCAGAGCCTTACCACTTTGTCGT
TGACCTCTTCGCATTCAACTACGGCTAAATGGAGAGCGGGTTCGCCGAGG
ACCTTGTGACACATTACTACGATGTGTATGATGGAAACGTGGAAGGGAAG
CGGGCAGAGGCGCTGGAACCGTTCTACTCCAAAGACTCGGTGTTCGTGAT
CGAAGGAGAGGAGCACCGCGGTGAGAGCATCCTCGAAAAGCTCGCCTCGC
TCCCAGCGACCAAGCACGAGCTCGCAACGCTCGACGTGCAGCCAATTGAC
GACAATCACGCGCTCATCGTCGTCCGAGGACACATCACCATGGGCGGAGA
AGACCACTCCCTCTCCTTCATCCAAACCTTCGTCGTCCTCGCCACCGGAG
ATGACGCAGAGCCTTACCACTTTGTCGTTGACCTCTTCGCATTCAACTAC
GGCTAA
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