mRNA_M-pyrifera_M_contig110639.2234.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110639.2234.1
Unique NamemRNA_M-pyrifera_M_contig110639.2234.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110639.2234.1 vs. uniprot
Match: A0A7S2W701_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W701_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    4 AWQVGRLVLAAARLVSPPLPGVSSRCFPYVSLVDLSWQETPGFIAGATNPIFLEKGALWCDLLCNVDKGEVS 219
            A +V  LVL A+ +++  +PGV++R  PY  L DL + ETPGFIAG TNP+F      W DLLC V+  + S
Sbjct:  367 AGEVCTLVLGASSMIAAEVPGVATRIHPYAHLADLDFLETPGFIAGVTNPVF-RSHPQWWDLLCVVESSQSS 437
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BLAST of mRNA_M-pyrifera_M_contig110639.2234.1 vs. uniprot
Match: A0A7S0SW50_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW50_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-10
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 SAWQVGRLVLAAARLVSPPLPGVSSRCFPYVSLVDLSWQETPGFIAGATNPIFLEKGALWCDLLCNVDKGEVSAV 225
            +A  + ++VL++  LVSPP+  ++ R + Y +  DLS+ E PG+IAGATNP+F +K + W DLLC +D    +A+
Sbjct:  264 AASDIAQIVLSSVALVSPPINTIT-RVYAYANFSDLSFLEVPGYIAGATNPMFQQKDSWW-DLLCILDLPNNTAI 336
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BLAST of mRNA_M-pyrifera_M_contig110639.2234.1 vs. uniprot
Match: A0A0L0DP29_THETB (UDENN domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DP29_THETB)

HSP 1 Score: 61.6 bits (148), Expect = 2.640e-9
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    4 AWQVGRLVLAAARLVSPPLPGVSSRCFPYVSLVDLSWQETPGFIAGATNPIFLEKGALWCDLLCNVDKGEV 216
            A +V   VL A  +VSPPLP V  R FPY +LV+L + +   F AG TN IF ++   W D+LC+++ G+V
Sbjct:  363 AGEVCDAVLGAMSMVSPPLPAVIKRTFPYTNLVNLDFLQLSSFCAGTTNLIFQQREDWW-DVLCDLETGKV 432
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BLAST of mRNA_M-pyrifera_M_contig110639.2234.1 vs. uniprot
Match: A0A6H5K009_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K009_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.840e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   64 GVSSRCFPYVSLVDLSWQETPGFIAGATNPIFLEKGALWCDLLCNVD 204
            G+  R +PY SL DLS+ ETP ++AG TNP+F E    W D+LC +D
Sbjct:  296 GILHRAYPYASLSDLSFLETPSYVAGVTNPMF-ETHPEWWDVLCQLD 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110639.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2W701_9STRA1.270e-1147.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0SW50_9STRA7.420e-1042.67Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A0L0DP29_THETB2.640e-945.07UDENN domain-containing protein n=1 Tax=Thecamonas... [more]
A0A6H5K009_9PHAE1.840e-651.06UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110639contigM-pyrifera_M_contig110639:21..251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog36331.EPrPI00000015975
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005933,GO:0005935,GO:0007049,GO:0007163,GO:0008150,GO:0009987,GO:0016020,GO:0022402,GO:0030010,GO:0030427,GO:0030447,GO:0030448,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0051179,GO:0051301,GO:0051641,GO:0051666,GO:0061640,GO:0071944,GO:1903047
EggNOG free text desc.Whole genome shotgun sequence assembly, scaffold_6, strain Mel28. Source PGD
EggNOG OGs1MAPU@121069,2CMMJ@1,2QQUZ@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2299044-CDS-M-pyrifera_M_contig110639:20..2511622815618.2299044-CDS-M-pyrifera_M_contig110639:20..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110639 21..251 +
1692277490.0031242-CDS-M-pyrifera_M_contig110639:20..2511692277490.0031242-CDS-M-pyrifera_M_contig110639:20..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110639 21..251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110639.2234.1prot_M-pyrifera_M_contig110639.2234.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110639 21..251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110639.2234.1

>prot_M-pyrifera_M_contig110639.2234.1 ID=prot_M-pyrifera_M_contig110639.2234.1|Name=mRNA_M-pyrifera_M_contig110639.2234.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
SAWQVGRLVLAAARLVSPPLPGVSSRCFPYVSLVDLSWQETPGFIAGATN
PIFLEKGALWCDLLCNVDKGEVSAVRD
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mRNA from alignment at M-pyrifera_M_contig110639:21..251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110639.2234.1 ID=mRNA_M-pyrifera_M_contig110639.2234.1|Name=mRNA_M-pyrifera_M_contig110639.2234.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig110639:21..251+ (Macrocystis pyrifera P11B4 male)
TCTGCATGGCAAGTGGGCAGGTTGGTGCTAGCTGCTGCTCGATTGGTCTC
TCCTCCGCTTCCCGGAGTCTCCTCACGCTGTTTCCCATACGTTTCACTCG
TGGACTTGTCGTGGCAAGAAACCCCAGGATTTATCGCCGGAGCTACAAAC
CCCATTTTCCTCGAAAAGGGAGCGCTGTGGTGCGATCTCCTCTGCAATGT
GGACAAGGGCGAAGTGAGTGCAGTGCGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110639:21..251+

>mRNA_M-pyrifera_M_contig110639.2234.1 ID=mRNA_M-pyrifera_M_contig110639.2234.1|Name=mRNA_M-pyrifera_M_contig110639.2234.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig110639:21..251+ (Macrocystis pyrifera P11B4 male)
TCTGCATGGCAAGTGGGCAGGTTGGTGCTAGCTGCTGCTCGATTGGTCTC
TCCTCCGCTTCCCGGAGTCTCCTCACGCTGTTTCCCATACGTTTCACTCG
TGGACTTGTCGTGGCAAGAAACCCCAGGATTTATCGCCGGAGCTACAAAC
CCCATTTTCCTCGAAAAGGGAGCGCTGTGGTGCGATCTCCTCTGCAATGT
GGACAAGGGCGAAGTGAGTGCAGTGCGAGATTCTGCATGGCAAGTGGGCA
GGTTGGTGCTAGCTGCTGCTCGATTGGTCTCTCCTCCGCTTCCCGGAGTC
TCCTCACGCTGTTTCCCATACGTTTCACTCGTGGACTTGTCGTGGCAAGA
AACCCCAGGATTTATCGCCGGAGCTACAAACCCCATTTTCCTCGAAAAGG
GAGCGCTGTGGTGCGATCTCCTCTGCAATGTGGACAAGGGCGAAGTGAGT
GCAGTGCGAGAT
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