mRNA_M-pyrifera_M_contig110611.2227.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110611.2227.1
Unique NamemRNA_M-pyrifera_M_contig110611.2227.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A7V0ISZ5_9ACTN (XRE family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V0ISZ5_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 8.950e-28
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
            P+L +    N+ R+ LHP+GLR  IVN   F   ++ R+ R ++  P DP L  L  E+ E+ G AD      + S    L+PLHL+   H++RLFTTIAT+GAP DITL+EL +ET  P D ETE   R
Sbjct:  134 PDLAADLGGNVARLSLHPNGLRRRIVNWDQFGAALLHRLEREVNDRPSDPELAALLVEVREYPGIADLAARPELPSSQDLLVPLHLRTPNHDLRLFTTIATIGAPYDITLEELRLETLLPADPETEAALR 263          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A511CWB2_9PSEU (Transcriptional regulator n=2 Tax=Pseudonocardia asaccharolytica TaxID=54010 RepID=A0A511CWB2_9PSEU)

HSP 1 Score: 106 bits (264), Expect = 2.070e-25
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
            N++R+ LHPDGL PH+ + A +  ++V R+RR ++R   DPAL  L AE+T +    D G D       + ++PL L     E+ LF+T+A LGAP D+TL+E+ IE+ FP DD T RY R+R
Sbjct:  147 NVLRVSLHPDGLAPHVTDLAEYAAHLVSRLRRQVARAA-DPALAELLAELTGY--LRDAGLDPAAQPRDRIVLPLRLCHPDQELTLFSTVAVLGAPLDVTLEEIAIESFFPADDATARYLRTR 266          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A848DF93_9PSEU (Helix-turn-helix transcriptional regulator n=1 Tax=Pseudonocardia bannensis TaxID=630973 RepID=A0A848DF93_9PSEU)

HSP 1 Score: 99.4 bits (246), Expect = 9.400e-23
Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
            PEL +    N++R+ LHP GL PH+V+   +  ++V R+RR  +    DPALE L AE+T    A D   D G     + ++PL L+    ++ LF+T+A LGAP D+TL+E+ IE+  P DD T  Y RSR
Sbjct:  139 PELLT-PPVNVLRVSLHPRGLAPHVVDLEEYAAHLVSRLRRQAAH-SADPALEELLAELTGHLRAQD--LDPGAQPRDRIVLPLRLRHPDGDLTLFSTVAVLGAPLDVTLEEVAIESFLPADDATAGYLRSR 266          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: UPI00146E675F (helix-turn-helix transcriptional regulator n=1 Tax=Streptomyces sp. HNM0574 TaxID=2714954 RepID=UPI00146E675F)

HSP 1 Score: 98.2 bits (243), Expect = 2.950e-22
Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEG--AADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSRSA 402
            PEL   +  N++R+ LHPDGL    VN A    + + RV R  +    DP L  LY E+  + G  A  PG D G     Q L+PL  +    E+ +F+T+AT GAP DITL EL IE  FP D  TER  R R++
Sbjct:  141 PELLHRTPVNVVRLALHPDGLAARCVNLAEVRGHFLDRVLRQ-ANATGDPGLRALYEEVRGYGGGPAPVPGTD-GEAGASQVLVPLRFRTPHGELSMFSTMATFGAPADITLSELAIELFFPADAHTERVLRDRAS 274          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: UPI00146E5B81 (helix-turn-helix transcriptional regulator n=2 Tax=Pseudonocardia TaxID=1847 RepID=UPI00146E5B81)

HSP 1 Score: 96.3 bits (238), Expect = 1.340e-21
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSRSA 402
            PEL +  A N++R+ LHP GL PH+V+   +  ++V R+RR   R      L  L  E+  +    D G D       + L+PL L+    E+ LF+T+A LGAP D+TL+E+ IE+ FP DD T  Y R R A
Sbjct:  136 PELLAPPA-NVLRVSLHPRGLAPHVVDLEEYAAHLVSRLRRQAER-SATTGLRALLGELVGY--CRDAGLDPAAQPRDRILLPLRLRHPDQELTLFSTVAVLGAPLDVTLEEVAIESFFPADDATATYLRERFA 265          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A846XML1_9NOCA (Helix-turn-helix transcriptional regulator n=4 Tax=Nocardia TaxID=1817 RepID=A0A846XML1_9NOCA)

HSP 1 Score: 92.8 bits (229), Expect = 3.610e-20
Identity = 53/132 (40.15%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
            P+L SG   N+ R+ LHP GL   + N       ++ R+ R +     DP L  LY E+  +   A   E  G T+   F +PL L     E+ LF T+AT GAP D+TL EL IE  +P+DD T RY RSR
Sbjct:  113 PDLLSGQP-NVYRLVLHPRGLTARLANPQQVREQLLERLARQVDTTG-DPRLRDLYDEVAGYPAPAASTETPGSTAPGPFQVPLRLNTSEGELSLFGTMATFGAPADVTLSELAIELFYPLDDFTARYLRSR 242          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A7Y2A4A9_9ACTN (Helix-turn-helix transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2A4A9_9ACTN)

HSP 1 Score: 91.7 bits (226), Expect = 6.960e-20
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    7 LFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
            +  G   NL+R+ +HPDG+R    N       +V R+ R +   P D AL  +Y E+  + G   P  D  + S    L+P+H + G  ++RL TTI TLGA  D+TL+EL +E  +P D E+E   R
Sbjct:  128 IAEGDTPNLLRVAMHPDGMRRFCANWDEVAVVLVQRLHREVLSRPGDDALREVYDEVMAYPGLPSPN-DGLLPSGNDLLIPIHYRFGDVDVRLITTITTLGAAYDVTLEELRLEVSYPADAESEAVLR 254          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A2G7GEE7_9CHRO (Transcriptional regulator n=3 Tax=Chroococcales TaxID=1118 RepID=A0A2G7GEE7_9CHRO)

HSP 1 Score: 91.3 bits (225), Expect = 1.240e-19
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
            NLMR+  H  GLRP I N   F  +++GR+ R  + +        L+ E+  + G ++    S   +    L+ +HLK+     + F+TIATLG P DITLQEL IE  FP D+ TER +R
Sbjct:  151 NLMRVVFHSQGLRPFIANWQEFAGHLLGRMHREANSVGESEQSTLLFDELMSYPGVSEIWNTSNRAAQNTLLLTIHLKQNDLSWQFFSTIATLGTPYDITLQELRIECLFPADEATERNWR 271          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A2T1C599_9CYAN (XRE family transcriptional regulator n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C599_9CYAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-19
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYF 387
            NLMR+  H  GLRP I N   F P+++ RV R  + +        L+ E+  + G +D  + S   +    L+ +HL++     + F+TIATLG P DITLQEL IE  FP +D TE++F
Sbjct:  156 NLMRVVFHSQGLRPFISNWEEFAPHLLERVHREANSLGESEQSTLLFNELMTYAGVSDLWQTSNRAAQNTLLLTIHLQREELNWQFFSTIATLGTPYDITLQELRIECLFPANDATEQHF 275          
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A5B2X4H9_9PSEU (Helix-turn-helix transcriptional regulator n=1 Tax=Solihabitans fulvus TaxID=1892852 RepID=A0A5B2X4H9_9PSEU)

HSP 1 Score: 91.3 bits (225), Expect = 1.340e-19
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
            NLMR+CLHPDGL P +VN   +  +++ R+R+ ++    DP L  LY E+  +     P  +  +       +PL L+    E+  F+T++T G P D+T+ EL +E+ FP DDETE   R
Sbjct:  142 NLMRVCLHPDGLAPRVVNLGEWRAHLLSRLRQQVATTA-DPELSALYEELAGYP-CDQPEPEVELPGPGAIAVPLRLRFAGRELVFFSTVSTFGTPLDVTVAELVLESFFPADDETEAVLR 260          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V0ISZ5_9ACTN8.950e-2844.62XRE family transcriptional regulator n=1 Tax=Actin... [more]
A0A511CWB2_9PSEU2.070e-2543.90Transcriptional regulator n=2 Tax=Pseudonocardia a... [more]
A0A848DF93_9PSEU9.400e-2341.67Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI00146E675F2.950e-2241.91helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI00146E5B811.340e-2139.55helix-turn-helix transcriptional regulator n=2 Tax... [more]
A0A846XML1_9NOCA3.610e-2040.15Helix-turn-helix transcriptional regulator n=4 Tax... [more]
A0A7Y2A4A9_9ACTN6.960e-2036.72Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A2G7GEE7_9CHRO1.240e-1938.84Transcriptional regulator n=3 Tax=Chroococcales Ta... [more]
A0A2T1C599_9CYAN1.300e-1939.17XRE family transcriptional regulator n=1 Tax=Meris... [more]
A0A5B2X4H9_9PSEU1.340e-1937.19Helix-turn-helix transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110611contigM-pyrifera_M_contig110611:176..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helix-turn-helix XRE-family like proteins
EggNOG OGs2GK1R@201174,4DXKX@85010,COG1396@1,COG1396@2
COG Functional cat.K
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
Taxonomic scopeBacteria
Seed ortholog score106.7
Seed ortholog evalue8.8e-21
Seed eggNOG ortholog1123024.AUII01000008_gene1849
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.8954065-CDS-M-pyrifera_M_contig110611:175..5861622815617.8954065-CDS-M-pyrifera_M_contig110611:175..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110611 176..586 -
1692277489.8815496-CDS-M-pyrifera_M_contig110611:175..5861692277489.8815496-CDS-M-pyrifera_M_contig110611:175..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110611 176..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110611.2227.1prot_M-pyrifera_M_contig110611.2227.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110611 176..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110611.2227.1

>prot_M-pyrifera_M_contig110611.2227.1 ID=prot_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDP
ALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIA
TLGAPQDITLQELFIETGFPVDDETERYFRSRSARK*
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mRNA from alignment at M-pyrifera_M_contig110611:176..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110611.2227.1 ID=mRNA_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig110611:176..586- (Macrocystis pyrifera P11B4 male)
CCCGAATTGTTTTCCGGCTCGGCGACGAACCTGATGCGGATCTGCCTGCA TCCCGATGGGCTGCGGCCGCATATCGTGAACCGGGCCGCTTTCGAACCCT ACATGGTCGGCCGCGTGCGCCGCTCGATGAGCCGGATCCCCCGGGATCCC GCGCTCGAAACGTTGTATGCGGAAATTACGGAATTCGAAGGCGCCGCGGA TCCCGGCGAGGACAGTGGTATGACGTCGGTACCGCAGTTCCTGATGCCGC TGCATCTGAAAAAAGGTACGCACGAAATCCGCCTGTTTACGACGATCGCA ACGCTCGGCGCGCCCCAGGACATCACGCTGCAGGAACTGTTTATCGAAAC GGGATTTCCGGTCGACGATGAGACGGAGCGCTACTTCCGCTCGCGCAGCG CGCGGAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110611:176..586-

>mRNA_M-pyrifera_M_contig110611.2227.1 ID=mRNA_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig110611:176..586- (Macrocystis pyrifera P11B4 male)
CCCGAATTGTTTTCCGGCTCGGCGACGAACCTGATGCGGATCTGCCTGCA
TCCCGATGGGCTGCGGCCGCATATCGTGAACCGGGCCGCTTTCGAACCCT
ACATGGTCGGCCGCGTGCGCCGCTCGATGAGCCGGATCCCCCGGGATCCC
GCGCTCGAAACGTTGTATGCGGAAATTACGGAATTCGAAGGCGCCGCGGA
TCCCGGCGAGGACAGTGGTATGACGTCGGTACCGCAGTTCCTGATGCCGC
TGCATCTGAAAAAAGGTACGCACGAAATCCGCCTGTTTACGACGATCGCA
ACGCTCGGCGCGCCCCAGGACATCACGCTGCAGGAACTGTTTATCGAAAC
GGGATTTCCGGTCGACGATGAGACGGAGCGCTACTTCCGCTCGCGCAGCG
CGCGGAAGTAACCCGAATTGTTTTCCGGCTCGGCGACGAACCTGATGCGG
ATCTGCCTGCATCCCGATGGGCTGCGGCCGCATATCGTGAACCGGGCCGC
TTTCGAACCCTACATGGTCGGCCGCGTGCGCCGCTCGATGAGCCGGATCC
CCCGGGATCCCGCGCTCGAAACGTTGTATGCGGAAATTACGGAATTCGAA
GGCGCCGCGGATCCCGGCGAGGACAGTGGTATGACGTCGGTACCGCAGTT
CCTGATGCCGCTGCATCTGAAAAAAGGTACGCACGAAATCCGCCTGTTTA
CGACGATCGCAACGCTCGGCGCGCCCCAGGACATCACGCTGCAGGAACTG
TTTATCGAAACGGGATTTCCGGTCGACGATGAGACGGAGCGCTACTTCCG
CTCGCGCAGCGCGCGGAAGTAA
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