mRNA_M-pyrifera_M_contig110611.2227.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A7V0ISZ5_9ACTN (XRE family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V0ISZ5_9ACTN) HSP 1 Score: 112 bits (280), Expect = 8.950e-28 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
P+L + N+ R+ LHP+GLR IVN F ++ R+ R ++ P DP L L E+ E+ G AD + S L+PLHL+ H++RLFTTIAT+GAP DITL+EL +ET P D ETE R
Sbjct: 134 PDLAADLGGNVARLSLHPNGLRRRIVNWDQFGAALLHRLEREVNDRPSDPELAALLVEVREYPGIADLAARPELPSSQDLLVPLHLRTPNHDLRLFTTIATIGAPYDITLEELRLETLLPADPETEAALR 263
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A511CWB2_9PSEU (Transcriptional regulator n=2 Tax=Pseudonocardia asaccharolytica TaxID=54010 RepID=A0A511CWB2_9PSEU) HSP 1 Score: 106 bits (264), Expect = 2.070e-25 Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
N++R+ LHPDGL PH+ + A + ++V R+RR ++R DPAL L AE+T + D G D + ++PL L E+ LF+T+A LGAP D+TL+E+ IE+ FP DD T RY R+R
Sbjct: 147 NVLRVSLHPDGLAPHVTDLAEYAAHLVSRLRRQVARAA-DPALAELLAELTGY--LRDAGLDPAAQPRDRIVLPLRLCHPDQELTLFSTVAVLGAPLDVTLEEIAIESFFPADDATARYLRTR 266
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A848DF93_9PSEU (Helix-turn-helix transcriptional regulator n=1 Tax=Pseudonocardia bannensis TaxID=630973 RepID=A0A848DF93_9PSEU) HSP 1 Score: 99.4 bits (246), Expect = 9.400e-23 Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
PEL + N++R+ LHP GL PH+V+ + ++V R+RR + DPALE L AE+T A D D G + ++PL L+ ++ LF+T+A LGAP D+TL+E+ IE+ P DD T Y RSR
Sbjct: 139 PELLT-PPVNVLRVSLHPRGLAPHVVDLEEYAAHLVSRLRRQAAH-SADPALEELLAELTGHLRAQD--LDPGAQPRDRIVLPLRLRHPDGDLTLFSTVAVLGAPLDVTLEEVAIESFLPADDATAGYLRSR 266
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: UPI00146E675F (helix-turn-helix transcriptional regulator n=1 Tax=Streptomyces sp. HNM0574 TaxID=2714954 RepID=UPI00146E675F) HSP 1 Score: 98.2 bits (243), Expect = 2.950e-22 Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = 1
Query: 1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEG--AADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSRSA 402
PEL + N++R+ LHPDGL VN A + + RV R + DP L LY E+ + G A PG D G Q L+PL + E+ +F+T+AT GAP DITL EL IE FP D TER R R++
Sbjct: 141 PELLHRTPVNVVRLALHPDGLAARCVNLAEVRGHFLDRVLRQ-ANATGDPGLRALYEEVRGYGGGPAPVPGTD-GEAGASQVLVPLRFRTPHGELSMFSTMATFGAPADITLSELAIELFFPADAHTERVLRDRAS 274
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: UPI00146E5B81 (helix-turn-helix transcriptional regulator n=2 Tax=Pseudonocardia TaxID=1847 RepID=UPI00146E5B81) HSP 1 Score: 96.3 bits (238), Expect = 1.340e-21 Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 1
Query: 1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSRSA 402
PEL + A N++R+ LHP GL PH+V+ + ++V R+RR R L L E+ + D G D + L+PL L+ E+ LF+T+A LGAP D+TL+E+ IE+ FP DD T Y R R A
Sbjct: 136 PELLAPPA-NVLRVSLHPRGLAPHVVDLEEYAAHLVSRLRRQAER-SATTGLRALLGELVGY--CRDAGLDPAAQPRDRILLPLRLRHPDQELTLFSTVAVLGAPLDVTLEEVAIESFFPADDATATYLRERFA 265
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A846XML1_9NOCA (Helix-turn-helix transcriptional regulator n=4 Tax=Nocardia TaxID=1817 RepID=A0A846XML1_9NOCA) HSP 1 Score: 92.8 bits (229), Expect = 3.610e-20 Identity = 53/132 (40.15%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 1 PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFRSR 396
P+L SG N+ R+ LHP GL + N ++ R+ R + DP L LY E+ + A E G T+ F +PL L E+ LF T+AT GAP D+TL EL IE +P+DD T RY RSR
Sbjct: 113 PDLLSGQP-NVYRLVLHPRGLTARLANPQQVREQLLERLARQVDTTG-DPRLRDLYDEVAGYPAPAASTETPGSTAPGPFQVPLRLNTSEGELSLFGTMATFGAPADVTLSELAIELFYPLDDFTARYLRSR 242
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A7Y2A4A9_9ACTN (Helix-turn-helix transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2A4A9_9ACTN) HSP 1 Score: 91.7 bits (226), Expect = 6.960e-20 Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 1
Query: 7 LFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
+ G NL+R+ +HPDG+R N +V R+ R + P D AL +Y E+ + G P D + S L+P+H + G ++RL TTI TLGA D+TL+EL +E +P D E+E R
Sbjct: 128 IAEGDTPNLLRVAMHPDGMRRFCANWDEVAVVLVQRLHREVLSRPGDDALREVYDEVMAYPGLPSPN-DGLLPSGNDLLIPIHYRFGDVDVRLITTITTLGAAYDVTLEELRLEVSYPADAESEAVLR 254
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A2G7GEE7_9CHRO (Transcriptional regulator n=3 Tax=Chroococcales TaxID=1118 RepID=A0A2G7GEE7_9CHRO) HSP 1 Score: 91.3 bits (225), Expect = 1.240e-19 Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
NLMR+ H GLRP I N F +++GR+ R + + L+ E+ + G ++ S + L+ +HLK+ + F+TIATLG P DITLQEL IE FP D+ TER +R
Sbjct: 151 NLMRVVFHSQGLRPFIANWQEFAGHLLGRMHREANSVGESEQSTLLFDELMSYPGVSEIWNTSNRAAQNTLLLTIHLKQNDLSWQFFSTIATLGTPYDITLQELRIECLFPADEATERNWR 271
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A2T1C599_9CYAN (XRE family transcriptional regulator n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C599_9CYAN) HSP 1 Score: 91.3 bits (225), Expect = 1.300e-19 Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYF 387
NLMR+ H GLRP I N F P+++ RV R + + L+ E+ + G +D + S + L+ +HL++ + F+TIATLG P DITLQEL IE FP +D TE++F
Sbjct: 156 NLMRVVFHSQGLRPFISNWEEFAPHLLERVHREANSLGESEQSTLLFNELMTYAGVSDLWQTSNRAAQNTLLLTIHLQREELNWQFFSTIATLGTPYDITLQELRIECLFPANDATEQHF 275
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Match: A0A5B2X4H9_9PSEU (Helix-turn-helix transcriptional regulator n=1 Tax=Solihabitans fulvus TaxID=1892852 RepID=A0A5B2X4H9_9PSEU) HSP 1 Score: 91.3 bits (225), Expect = 1.340e-19 Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 28 NLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPALETLYAEITEFEGAADPGEDSGMTSVPQFLMPLHLKKGTHEIRLFTTIATLGAPQDITLQELFIETGFPVDDETERYFR 390
NLMR+CLHPDGL P +VN + +++ R+R+ ++ DP L LY E+ + P + + +PL L+ E+ F+T++T G P D+T+ EL +E+ FP DDETE R
Sbjct: 142 NLMRVCLHPDGLAPRVVNLGEWRAHLLSRLRQQVATTA-DPELSALYEELAGYP-CDQPEPEVELPGPGAIAVPLRLRFAGRELVFFSTVSTFGTPLDVTVAELVLESFFPADDETEAVLR 260 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110611.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110611.2227.1 >prot_M-pyrifera_M_contig110611.2227.1 ID=prot_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp PELFSGSATNLMRICLHPDGLRPHIVNRAAFEPYMVGRVRRSMSRIPRDPback to top mRNA from alignment at M-pyrifera_M_contig110611:176..586- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110611.2227.1 ID=mRNA_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig110611:176..586- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110611:176..586- >mRNA_M-pyrifera_M_contig110611.2227.1 ID=mRNA_M-pyrifera_M_contig110611.2227.1|Name=mRNA_M-pyrifera_M_contig110611.2227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig110611:176..586- (Macrocystis pyrifera P11B4 male)back to top |