prot_M-pyrifera_M_contig9613.22161.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9613.22161.1
Unique Nameprot_M-pyrifera_M_contig9613.22161.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length169
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9613.22161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 8..168
e-value: 3.1E-12
score: 46.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..68
e-value: 4.6E-15
score: 57.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 69..169
e-value: 9.5E-20
score: 72.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..39
e-value: 2.5E-4
score: 19.0
coord: 76..110
e-value: 9.5E-7
score: 26.6
coord: 112..144
e-value: 5.2E-4
score: 18.0
coord: 41..72
e-value: 1.4E-5
score: 23.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..108
score: 11.356
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..169
score: 5.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 109..143
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 10.139
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9613contigM-pyrifera_M_contig9613:121..5604 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9613.22161.1mRNA_M-pyrifera_M_contig9613.22161.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9613 121..5604 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9613.22161.1 ID=prot_M-pyrifera_M_contig9613.22161.1|Name=mRNA_M-pyrifera_M_contig9613.22161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
HQPDLLSYNLALAACARRGDAGRTLRMLGDMRRAGLLPTTVSFSTAVSSC
ARAGKADEALTLLGRMKSGGVQRTLVTFNAALLACAKGGKREEAVGVLAE
MKEDGVPPNEKSFRLVIQACGRAGDAAGALGVLRGMSKTGIIPGEHAIAS
TMEAFAQVGDVDQVLSLMK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat