mRNA_M-pyrifera_M_contig9613.22161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9613.22161.1
Unique NamemRNA_M-pyrifera_M_contig9613.22161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9613.22161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9613contigM-pyrifera_M_contig9613:121..5604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-28_003050.2
Exons4
Model size507
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9613.22161.1prot_M-pyrifera_M_contig9613.22161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9613 121..5604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.742599-CDS-M-pyrifera_M_contig9613:120..2941622816876.742599-CDS-M-pyrifera_M_contig9613:120..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 121..294 +
1692278231.0793736-CDS-M-pyrifera_M_contig9613:120..2941692278231.0793736-CDS-M-pyrifera_M_contig9613:120..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 121..294 +
1622816876.7533789-CDS-M-pyrifera_M_contig9613:3470..35571622816876.7533789-CDS-M-pyrifera_M_contig9613:3470..3557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 3471..3557 +
1692278231.0891602-CDS-M-pyrifera_M_contig9613:3470..35571692278231.0891602-CDS-M-pyrifera_M_contig9613:3470..3557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 3471..3557 +
1622816876.7636964-CDS-M-pyrifera_M_contig9613:4794..48951622816876.7636964-CDS-M-pyrifera_M_contig9613:4794..4895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 4795..4895 +
1692278231.098005-CDS-M-pyrifera_M_contig9613:4794..48951692278231.098005-CDS-M-pyrifera_M_contig9613:4794..4895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 4795..4895 +
1622816876.7739391-CDS-M-pyrifera_M_contig9613:5459..56041622816876.7739391-CDS-M-pyrifera_M_contig9613:5459..5604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 5460..5604 +
1692278231.1069493-CDS-M-pyrifera_M_contig9613:5459..56041692278231.1069493-CDS-M-pyrifera_M_contig9613:5459..5604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9613 5460..5604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9613.22161.1

>prot_M-pyrifera_M_contig9613.22161.1 ID=prot_M-pyrifera_M_contig9613.22161.1|Name=mRNA_M-pyrifera_M_contig9613.22161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
HQPDLLSYNLALAACARRGDAGRTLRMLGDMRRAGLLPTTVSFSTAVSSC
ARAGKADEALTLLGRMKSGGVQRTLVTFNAALLACAKGGKREEAVGVLAE
MKEDGVPPNEKSFRLVIQACGRAGDAAGALGVLRGMSKTGIIPGEHAIAS
TMEAFAQVGDVDQVLSLMK
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mRNA from alignment at M-pyrifera_M_contig9613:121..5604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9613.22161.1 ID=mRNA_M-pyrifera_M_contig9613.22161.1|Name=mRNA_M-pyrifera_M_contig9613.22161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5484bp|location=Sequence derived from alignment at M-pyrifera_M_contig9613:121..5604+ (Macrocystis pyrifera P11B4 male)
CACCAACCCGACCTGCTGAGCTACAACTTAGCTCTAGCCGCGTGCGCGCG
GAGAGGGGACGCGGGGAGAACGCTCCGGATGCTGGGGGACATGCGTAGAG
CCGGGCTGCTTCCGACCACCGTCAGCTTCAGCACGGCGGTTTCATCCTGC
GCGAGGGCGGGGAAAGCGGACGAGGTCAGTAAGAGCTTTTTTTTACCTTT
TTTTGTTCGACACTGTCATGCGGCACTGTCATGTGTGCTCGAAGTATACT
TCTAGTCCCCTCAAGGATTGGTGAAAATAAAAGTTTATAACACCTTCGGG
GGACCCCGAGACGGCGGCCGAAGCAATGGTTGGTACGTCTGGTGCCCTAT
CAACCGTCTACGAGCGTCCGCGAGCGTTCAGCGCTACGGGTAGGATCGTT
TCGCGTCCGTGTTGCCGTGCGAGTCCTCGCGCTGTCACGTGGGGACACTA
ACCATTGTATCATCCGCGGTGATGGTAACCGTCAACTTTTTTTTTTTTTT
TTTGTCATTATTCCCCTCTGAAATCACCAAGAGGGTTGTTGAGCTCACCA
CACTTCCACGTGAAAGGTGGGTGCATGTGGGGGAGGACATGTGCCGTGTG
TCCATTTTTTGACCCGCCGCTCCCGTTTTGCAGAGGGAAACAAACCGAGC
TGTTGCTTTCATAGCAATCGGGGGCGCGTGAGTGTGCTGACCCCGACCTG
ATCCCGAGAGAGCTTCGACGCTACTATGGTTTGGCGACGCACGTTGCTGT
GTACGGGACGAAGGGGACTACTCGTAGCTCCATACATAAGTTGGTTGATT
TATTGGGCTGGGGGGGTTAGGGCTACGGTTAGTTGGCAGTTTCGTCGCGG
ACGAGGGCGGCCAAGGCGGACGAGGCCAGTACAGGTCAACCACTTTATTC
GACACTGCTACTATGGTTGACGCACGCACGGCTATGGTTGATGCACACTG
TGTCCGAGACGCAGAGGTCTTCAACCGTGGACATTGGTTCATTGGGTTGG
GGGGTTAAGGTTCCGGTTCGTCAGCAGTTTCGTCCTGCGCGAGAGCGGGG
AAAGGTGGACAAGACAAGGTCAGCAGAGTTCAACCAGTTTTTACTGTGGT
TGACGCGCAACTATGGTTGGTGCTCACTGTGTACGAGACGAAGAGTATAT
AAACCCTATACTTTGGTTCACTGGGTTGGGGGATAGTGTTCCGGTTTTGT
CTGCAGTTTCGTCCTGCGCGAGGGCGGGGAAGGCAGATGAGGTCAGTAGA
GTTCACCCACTTTATTCGACAACATTATACTACAATGGTTGACGCACACC
TATGGTTAATGCACACTGCCGTGTACGAGAGGAGGAGGACTTTGAACCGT
GTACATTGGTTGGTTGGGTTGGGGGTCGGGGTTCCGGTTTGTTTTGCAGT
GTTGTACAACGCGAGGGCGGGGAAGGCATTTGGGGTCGGTGAAGTTCAAC
CACTTTCTTTGATGCTGCTATGGTTGACGCACAGCTATGGTCGATGTACA
CTGCGTTCGAGACGAATAGGGCTACTCATATATTTACACATTGGTGGTTT
ATTGGTTTGGGGGTGAGGGTTACGGTTTGTGAGCAGCTTTGTCCTGGGTG
AGGGCGGGGAAGGCGGGTGAGGTCAGTAGAGTTTGAACCACTTTATTCGA
CAACTGCTATGGTTGGCGCACAGCCATGGTTGACGCACATTGCTGTTTAC
GGGACGAAGAAGACTACTCGTAGCTCTATACATGGGTTGATTATTGAGTC
GGGGGTTAGGATCACTGTTTTGTCAACAGCTTCGTCCTGCGCGAGGGCGA
GGAAGGCGGATGATGCCAGTAGAGTACAACCGCTCTATTCGACAGTTCAT
GACTATGGTTGACGCACGCCGCTGTGTGCGAGACAACGGGACTCTATGTA
ATGCCAACCAATGACTGATCGGGTCTACCTGATCGGGCGTTTAGGACAGC
AGTCCCGTTTTGGGGACACTCTACTTAGAATTTGACTGGTTCGTTCCCGA
AACGAGACTACGGTTTACCTTAAAAGGGGAAGAGATATTCGTAACATGTC
AACCAATGGTTGGTTGGGTCTGATTGCCTCAGGGTCAGGGTTAGGGTTAG
TTATGTTCGTATCGTACACTGCGACCCTCAACCATGCCAGGTAGTGTGGA
CTAAGAGGCAGATCTTCCCTTTGTGGGCCCCTACTATTTTTCGGGGGGGC
ATAGTAAATAGGACCCAGTATTGTTTGTAAAAATGGGGGAATATGCAGAT
TTTTGCGTGTACCGTAGGTTCTATTTACTATGGTCCTCCGTAATAGTGCG
GTACCGCGTTCGCGGTTAGAGGTCACTTGCGTACTATCGTCCTCTGTCAG
GTTTTGGGTCCACTTGATAGTATGAGGTCCCTCAAAGTGAAACCGACCGG
CTGAAAGAACCCAAAATCCCTCATCAAAGGTCAGGGAGCACGCATCTTGT
TCTTCTACCAATCTATGTGGCGTTTCTCAAGCGGGAGACAGGGCGCGTTG
GCCCATTTTAAGGCACTTGGGGAGTCCCTTATCGAGCGCCACGCTCACTG
TTGATGGGAAAGACGTTGTGCCCTATAGTAGGCAAAACAAAAAAACGGTG
CGCGGATTTTTTTTTTCCTCTCCCTCATATTTGCCACTCTCCCTTATCGC
AGGGTCGCTTGAAAAGAGGCGTCCATGACGCATGCTTCGGTACGGGGGGC
ACCCTGATTTTTGCTGAAGCTCCGGAATCGAAGAGGCCTACGCTGATACA
CGTGCAGCCCAACCGATGGTCGATCCCTTAACCTAGCTAGCTGTAGCACG
GGGAAATTTTTATTTGTGGTATTCCAACAAAGTTGAGTCAAGGAGCCCGC
TTTCGTCAGAAATATTCGCCTCAGAAGGCAAAAAAAAAAAAACTACTGCC
CCTATCGTACCACGCGTGCCTTTTTTTTTAAATTTTTGGCGAGGAGACCA
GAGGGAGGTGACATATATAATATATATGTATATAGAATATGCGACCAGAC
GGAGGTACACGAACAAAAAAAAAAGGCACACCAGTGTTTTGTTGAGACCT
GAACAGGGGGAGGGGTATGCTGAAATCGAGTAAACGGATAAAAGAAATAT
GCCCTTTCATTGATTCGCACAGCCAACCCCCACCCCACACTTGGGGTTAG
TTTTCCGTCCGAACCTTTTGCAGGAGTGTGATGTGGTTTTCTCTTTTCCG
TGGCGTTTGCATCCTGCGTGAGAAGGAAGGAACGCGTGCGCGGTCAGGGG
GAGGGATCTGGTGACGCGCTTGTGTTGGCTTATTGTTCGGCCGCCCTTTT
TCTTATCTTCTTTTCTTTGCTATTCGTTGTTTTTGTTTGTTTGTTTGCAG
GCACTAACGCTCCTGGGTCGGATGAAATCTGGAGGTGTCCAGCGTACCCT
GGTCACCTTTAACGCCGCTCTGCTCGCCTGCGCAAAGGTTAGGGTCCGCG
CTGTGTGGAAACTTTCGAAAAAATCTAGAAAAAAACTGAAGTCACGGTTC
GTGACGAAAAACAAAACTGGGAACGTGACGTTACACGAATTTGCAAATTG
TCACCAAGTCACGTTTTTTTTTATGCGTTCGTTAGGAGTCACCCTGTCAA
GGTTGAGGTCGGGATGTTGAGAGGCTGCGACTGAATGACGCGGCGCTTCT
CCCGAACCACGCCGCTTTTCGCGAGACAATTACAACTTGCTCCTCGCGAG
GCAAGCACCGCTACGAGTCCCCGAGGAACAAGACAGCCGACAGCGCTATA
ATAGCTTGCTACCCTGGTAGCCACAAGAGTGCCCACCTCGTACAGCTCAG
GCAGATCATGATCTATGTATGTACAGATAGATGATCTAGTCTTCACCTGC
CGTTGTGAGAGGTTGTGCAGGATCTGTACAGTACATATCAAAACACAGGA
AATCATGTGCTAGATCACTCAGGTTATACGGCTCCTACCCGACAACATGA
GCTAGATCGTACAGATCATAGAGACCATTCAAGATCGGGAATTGATCTGG
GTTGAAAGATCAAGTTGGCTTGCTTCGCCACCCCGCTATTACGGGTGGGG
AGAGCATAGTAATTACCTAGTATTACCGGGTAATCAGAAGCCACTTATGG
ACCCAAGAACCATGTATGTACCCCCGTATGTTTACATACCATGTTTGGTT
CTGATTGCTGCAGTAATTTATCCCGTAACAATACATATTACGGGTAATCA
GAACCCACGACGGACCCAAAAACCAGGTATCCCCCTACGTTAACACTCCA
TGTTTGGTGATGATTACTGTGTTCCCCCGTAACAATACATATTACGGGTA
ATCAGAACCCACCATGCACACAAACCAGGTATCTCCCTACGTTTACACGC
CACATTTGGTGCTGATTACTGTAATTTATCCCGTAACAATACATATTACG
GGTAATCAGAACCCACCATGCACACAAACCAGGTATCTCCCTACGTCTAC
ACGCCATATTTGGTTCTGATTACTGTGCTCCCCCGTAACAGTACATTTAC
GGGTAATCAGAACCCACCATGCAAACAAACCAGGTATCTCCCTACGTTTA
CACACCATATTTGGTTAGGGTTCACCATGTTGCCCCGTAAGATCAGCTGG
CCGCAACGCCCAGCCAAGGCATGCTCTATTCACAGCCACAGCCCCATTCC
TTCTCTTCCGTTTCCGCGTCGCAGGGGGGCAAGCGCGAGGAGGCAGTGGG
GGTCCTGGCCGAGATGAAGGAGGACGGTGTCCCTCCGAACGAGAAGTCGT
TTCGGCTCGTCATCCAGGCTTGCGGGTGAGCGGACTGGCCTGAATTAACC
CCTTTTTCCATAATAGTGTACTCTAATTCCGAGTCTCATTTGTCCCCGAA
AAGGGAGGGCAGTCCTATTTAAAAGGGTGGGGAACTGAGCGTCAATTTTT
TTTTTTTTCCCCGGCTCTTGAAACCGAAAAGTGTCCTGTACACTCCTTCG
AGGACAGGTCACGATCTTTAGTACATAGATCACCTTTAGTAGATCCTGTG
TCTTCCGTTTTGAGATGTGTAGGCAGCTCGCGATCTATAGTCGATAAACT
CCAGTAGATCCTATGTCTTGTGCAAGAACTGAATCGCGCAGGTACTACGA
ACACGCCCGGCATGCAACATGTGCGTGTGTGCAAAGAGCCGTGTCATAAA
ACTTCCCGCCCGGAAAATTTGGTGTAGGTCGGGCAGATCAGCTACAGTAG
TGAATCAAGGGTGCATCTACCCTGAAACATCTAAATAGTGAAACGCTAAT
CGTTCGCCTCACGACGTGTTTACGTAGTTGTCTATTTGTTTATGTTTTTT
CATTTTTATTTCGTTTTGTCCTCCTCTCGTGACGCGCAGGCGTGCCGGCG
ACGCCGCCGGAGCGCTGGGAGTCCTGCGAGGCATGTCCAAGACCGGGATA
ATTCCGGGGGAGCACGCGATCGCCTCAACCATGGAGGCTTTCGCGCAGGT
CGGGGATGTGGACCAAGTGTTGTCTCTGATGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9613:121..5604+

>mRNA_M-pyrifera_M_contig9613.22161.1 ID=mRNA_M-pyrifera_M_contig9613.22161.1|Name=mRNA_M-pyrifera_M_contig9613.22161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig9613:121..5604+ (Macrocystis pyrifera P11B4 male)
CACCAACCCGACCTGCTGAGCTACAACTTAGCTCTAGCCGCGTGCGCGCG
GAGAGGGGACGCGGGGAGAACGCTCCGGATGCTGGGGGACATGCGTAGAG
CCGGGCTGCTTCCGACCACCGTCAGCTTCAGCACGGCGGTTTCATCCTGC
GCGAGGGCGGGGAAAGCGGACGAGCACCAACCCGACCTGCTGAGCTACAA
CTTAGCTCTAGCCGCGTGCGCGCGGAGAGGGGACGCGGGGAGAACGCTCC
GGATGCTGGGGGACATGCGTAGAGCCGGGCTGCTTCCGACCACCGTCAGC
TTCAGCACGGCGGTTTCATCCTGCGCGAGGGCGGGGAAAGCGGACGAGGC
ACTAACGCTCCTGGGTCGGATGAAATCTGGAGGTGTCCAGCGTACCCTGG
TCACCTTTAACGCCGCTCTGCTCGCCTGCGCAAAGGCACTAACGCTCCTG
GGTCGGATGAAATCTGGAGGTGTCCAGCGTACCCTGGTCACCTTTAACGC
CGCTCTGCTCGCCTGCGCAAAGGGGGGCAAGCGCGAGGAGGCAGTGGGGG
TCCTGGCCGAGATGAAGGAGGACGGTGTCCCTCCGAACGAGAAGTCGTTT
CGGCTCGTCATCCAGGCTTGCGGGGGGGCAAGCGCGAGGAGGCAGTGGGG
GTCCTGGCCGAGATGAAGGAGGACGGTGTCCCTCCGAACGAGAAGTCGTT
TCGGCTCGTCATCCAGGCTTGCGGGCGTGCCGGCGACGCCGCCGGAGCGC
TGGGAGTCCTGCGAGGCATGTCCAAGACCGGGATAATTCCGGGGGAGCAC
GCGATCGCCTCAACCATGGAGGCTTTCGCGCAGGTCGGGGATGTGGACCA
AGTGTTGTCTCTGATGAAGGCGTGCCGGCGACGCCGCCGGAGCGCTGGGA
GTCCTGCGAGGCATGTCCAAGACCGGGATAATTCCGGGGGAGCACGCGAT
CGCCTCAACCATGGAGGCTTTCGCGCAGGTCGGGGATGTGGACCAAGTGT
TGTCTCTGATGAAG
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