mRNA_M-pyrifera_M_contig95941.22118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95941.22118.1
Unique NamemRNA_M-pyrifera_M_contig95941.22118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95941.22118.1 vs. uniprot
Match: A0A7S0K1M2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K1M2_CAFRO)

HSP 1 Score: 90.1 bits (222), Expect = 1.080e-18
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:   10 GYSMDQVEQRRAIAETALKRWQRAEKQFEKVPHKIHFLHIPLPP-THLPSDGQLIQACQALEERLANNEILYIFSSTGRGRAATLAGLVTGRIGGLHGARVVELLQRASETVERAMLPPPRARPLHSPP 393
            GY++D+ +   A    A  RW+R + QF   P ++HF+ +P+     +  D   +  C  LE R+   E LY+FS TGRGRAA +AGL+ GR+  L    V+  LQR  ETV+R ++PP RAR L S P
Sbjct:   80 GYALDRAKALAAEEAAARGRWERVQLQFRGFPERVHFVALPIAQFCAIEPDAHAVLLCAELERRVRAGERLYVFSGTGRGRAALVAGLLLGRLFSLPAHVVLSRLQRGLETVDRFLVPPQRARALRSGP 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95941.22118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0K1M2_CAFRO1.080e-1841.09Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95941contigM-pyrifera_M_contig95941:7..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog157072.XP_008862873.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BY5F@1,2QRNY@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-10_006320.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.4401488-UTR-M-pyrifera_M_contig95941:6..241622816874.4401488-UTR-M-pyrifera_M_contig95941:6..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95941 7..24 +
1692278229.5350776-UTR-M-pyrifera_M_contig95941:6..241692278229.5350776-UTR-M-pyrifera_M_contig95941:6..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95941 7..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.451256-CDS-M-pyrifera_M_contig95941:24..4201622816874.451256-CDS-M-pyrifera_M_contig95941:24..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95941 25..420 +
1692278229.545815-CDS-M-pyrifera_M_contig95941:24..4201692278229.545815-CDS-M-pyrifera_M_contig95941:24..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95941 25..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95941.22118.1prot_M-pyrifera_M_contig95941.22118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95941 25..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95941.22118.1

>prot_M-pyrifera_M_contig95941.22118.1 ID=prot_M-pyrifera_M_contig95941.22118.1|Name=mRNA_M-pyrifera_M_contig95941.22118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MDQVEQRRAIAETALKRWQRAEKQFEKVPHKIHFLHIPLPPTHLPSDGQL
IQACQALEERLANNEILYIFSSTGRGRAATLAGLVTGRIGGLHGARVVEL
LQRASETVERAMLPPPRARPLHSPPGKKKRRM
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mRNA from alignment at M-pyrifera_M_contig95941:7..420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95941.22118.1 ID=mRNA_M-pyrifera_M_contig95941.22118.1|Name=mRNA_M-pyrifera_M_contig95941.22118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig95941:7..420+ (Macrocystis pyrifera P11B4 male)
GAACAACAAGGGTATTCTATGGATCAAGTAGAGCAACGACGTGCCATTGC
AGAAACAGCACTGAAACGTTGGCAGCGTGCGGAGAAACAGTTTGAAAAAG
TGCCTCACAAGATCCACTTCCTCCACATCCCCCTCCCCCCAACACACCTC
CCTTCCGATGGACAGTTAATCCAAGCATGCCAAGCACTGGAAGAACGACT
AGCCAACAACGAAATTCTCTACATTTTCTCGTCCACTGGAAGAGGGAGAG
CAGCGACGTTGGCTGGGTTAGTGACTGGTCGAATTGGAGGGTTGCATGGA
GCCCGTGTTGTGGAATTGCTCCAACGTGCTTCGGAAACAGTAGAACGTGC
AATGCTCCCTCCTCCTCGTGCTCGCCCTCTGCATTCTCCCCCTGGAAAGA
AGAAACGGAGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95941:7..420+

>mRNA_M-pyrifera_M_contig95941.22118.1 ID=mRNA_M-pyrifera_M_contig95941.22118.1|Name=mRNA_M-pyrifera_M_contig95941.22118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig95941:7..420+ (Macrocystis pyrifera P11B4 male)
ATGGATCAAGTAGAGCAACGACGTGCCATTGCAGAAACAGCACTGAAACG
TTGGCAGCGTGCGGAGAAACAGTTTGAAAAAGTGCCTCACAAGATCCACT
TCCTCCACATCCCCCTCCCCCCAACACACCTCCCTTCCGATGGACAGTTA
ATCCAAGCATGCCAAGCACTGGAAGAACGACTAGCCAACAACGAAATTCT
CTACATTTTCTCGTCCACTGGAAGAGGGAGAGCAGCGACGTTGGCTGGGT
TAGTGACTGGTCGAATTGGAGGGTTGCATGGAGCCCGTGTTGTGGAATTG
CTCCAACGTGCTTCGGAAACAGTAGAACGTGCAATGCTCCCTCCTCCTCG
TGCTCGCCCTCTGCATTCTCCCCCTGGAAAGAAGAAACGGAGGATGATGG
ATCAAGTAGAGCAACGACGTGCCATTGCAGAAACAGCACTGAAACGTTGG
CAGCGTGCGGAGAAACAGTTTGAAAAAGTGCCTCACAAGATCCACTTCCT
CCACATCCCCCTCCCCCCAACACACCTCCCTTCCGATGGACAGTTAATCC
AAGCATGCCAAGCACTGGAAGAACGACTAGCCAACAACGAAATTCTCTAC
ATTTTCTCGTCCACTGGAAGAGGGAGAGCAGCGACGTTGGCTGGGTTAGT
GACTGGTCGAATTGGAGGGTTGCATGGAGCCCGTGTTGTGGAATTGCTCC
AACGTGCTTCGGAAACAGTAGAACGTGCAATGCTCCCTCCTCCTCGTGCT
CGCCCTCTGCATTCTCCCCCTGGAAAGAAGAAACGGAGGATG
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