mRNA_M-pyrifera_M_contig95601.22042.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95601.22042.1
Unique NamemRNA_M-pyrifera_M_contig95601.22042.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: A0A067BE64_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BE64_SAPPC)

HSP 1 Score: 143 bits (360), Expect = 2.770e-39
Identity = 81/160 (50.62%), Postives = 112/160 (70.00%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLSEE-----ELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G SY T    WD  +S G+G LLG VAV+L+RMN+ FLLGQS++ EIEQGI+ LLL++ S++ VYAV + W GPS+F++KA+VDF G+Y A    A+ LE +K    E      +L LLL  Y+E++TR++EKEV  ++A I+A Y EA FIE++P S
Sbjct:   89 GIGASYVTGNPFWDSAASIGIGCLLGGVAVSLIRMNQRFLLGQSVDAEIEQGIKALLLSRPSIDNVYAVQSQWVGPSTFSFKAEVDFDGTYMA----AQLLEIYKPVFLEAKDLKADLPLLLAWYAEDVTRLVEKEVQEVEAEIRALYPEAAFIELEPDS 244          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: G4ZIG2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIG2_PHYSP)

HSP 1 Score: 145 bits (366), Expect = 2.280e-38
Identity = 79/156 (50.64%), Postives = 111/156 (71.15%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   +WD L+S  +G+LLG VAV+L+R+N+ FLLGQS+E EIE+GI ELLLA+ S++ VYAV + W GPS+F+YKA+VDF G+Y A KL   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I++ Y EA FIE++P S
Sbjct:  306 GIGASHITGNPLWDSLASISIGVLLGGVAVSLIRLNQKFLLGQSVEPEIEKGIRELLLARPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTYLAAKLLRMYKPVFLETKDLENDLPLILAWYAEDVTRLVEKEVQEVEEVIRSIYPEAAFIELEPDS 461          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: H3H3N4_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3H3N4_PHYRM)

HSP 1 Score: 145 bits (365), Expect = 2.690e-38
Identity = 79/156 (50.64%), Postives = 110/156 (70.51%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G ++ T   +WD L+S  +GLLLG VAV+L+R+N+ FLLGQS+E EIE+GI ELLLA+ S++ VYAV + W GPS+F+YKA+VDF G+Y A KL   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I+  Y EA FIE++P S
Sbjct:  293 GIGATHITGNPLWDSLASISIGLLLGGVAVSLIRLNQKFLLGQSVEPEIEKGIRELLLARPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTYLAAKLLRMYKPVFLETKDLENDLPLILSWYAEDVTRLVEKEVQEVEEVIRGIYPEAAFIELEPDS 448          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: W2Q6Y3_PHYPN (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=W2Q6Y3_PHYPN)

HSP 1 Score: 145 bits (365), Expect = 3.440e-38
Identity = 79/156 (50.64%), Postives = 110/156 (70.51%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   +WD L+S  +G+LLG VAV+L+R+N+ FLLGQS+E EIE+GI ELLLA+ S++ VYAV + W GPS+F+YKA+VDF G+Y A KL   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I+  Y EA FIE++P S
Sbjct:  302 GIGASHITGNPLWDSLASISIGVLLGGVAVSLIRLNQKFLLGQSVEPEIEKGIRELLLARPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTYLAAKLLRMYKPVFLETKDLENDLPLILAWYAEDVTRLVEKEVQEVEEVIRGIYPEAAFIELEPDS 457          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: A0A2D4CAD3_PYTIN (Zinc transporter, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAD3_PYTIN)

HSP 1 Score: 144 bits (363), Expect = 4.960e-38
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   +WD L+S  +G LLG VAV L+R+N+ +LLGQS+E EIE+GI ELLLA+ S++AVYAV + W GPS+F+YKA+VDF G+Y A  L   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I+  Y EA FIE++P S
Sbjct:  283 GIGASHITGNPLWDSLASISIGALLGGVAVTLIRLNQRYLLGQSVEPEIEEGIRELLLARPSIDAVYAVQSQWVGPSTFSYKAEVDFDGTYLAASLLQMYKPVFMNAQDLENDLPLILAWYAEDVTRLVEKEVQEVEEEIRRYYPEAAFIELEPDS 438          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: M4BMY9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BMY9_HYAAE)

HSP 1 Score: 144 bits (363), Expect = 9.000e-38
Identity = 78/156 (50.00%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   VWD L+S  +G+LLG VA++L+RMN+ +LLGQS+E EIE GI ELLLA+ S++ VYAV + W GPS+F+YKA+VDF G++ A KL   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I+  Y EA FIE++P S
Sbjct:  323 GIGASHITGNPVWDSLASVSIGVLLGGVAISLIRMNQKYLLGQSVEPEIENGIRELLLARPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTFLAAKLLRMYKPVFLETKDLENDLPLILAWYAEDVTRLVEKEVQEVEEVIRGIYPEAAFIELEPDS 478          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: K3X8I3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8I3_GLOUD)

HSP 1 Score: 142 bits (359), Expect = 1.070e-37
Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G ++ T   +WD ++S  +G LLG VAV L+R+N+ +LLGQS+E EIEQGI ELLL++ S++ VYAV + W GPS+F+YKA+VDF G+Y A KL   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I+A Y EA FIE++P S
Sbjct:  243 GIGATHITGNPLWDSIASISIGTLLGGVAVTLIRLNQKYLLGQSVEPEIEQGIRELLLSRPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTYLAAKLLQMYKPVFMEAKDLENDLPLILSWYAEDVTRLVEKEVQEVEEEIRAFYPEAAFIELEPDS 398          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: A0A067CBS9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CBS9_SAPPC)

HSP 1 Score: 143 bits (360), Expect = 1.440e-37
Identity = 81/160 (50.62%), Postives = 112/160 (70.00%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLSEE-----ELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G SY T    WD  +S G+G LLG VAV+L+RMN+ FLLGQS++ EIEQGI+ LLL++ S++ VYAV + W GPS+F++KA+VDF G+Y A    A+ LE +K    E      +L LLL  Y+E++TR++EKEV  ++A I+A Y EA FIE++P S
Sbjct:  294 GIGASYVTGNPFWDSAASIGIGCLLGGVAVSLIRMNQRFLLGQSVDAEIEQGIKALLLSRPSIDNVYAVQSQWVGPSTFSFKAEVDFDGTYMA----AQLLEIYKPVFLEAKDLKADLPLLLAWYAEDVTRLVEKEVQEVEAEIRALYPEAAFIELEPDS 449          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: A0A3M6VSY6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSY6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.920e-37
Identity = 76/156 (48.72%), Postives = 110/156 (70.51%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS-EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   +WD L+S  +G+LLG VAV+L+R+N+ +LLGQS+E EIE GI ELLLA+ S++ VYAV + W GPS+F++KA+VDF G+Y A +L   Y   F      E +L L+L  Y+E++TR++EKEV  ++  I++ Y EA FIE++P S
Sbjct:  283 GIGASHITGNTLWDSLASVSIGVLLGGVAVSLIRLNQKYLLGQSVEPEIENGIRELLLARPSIDNVYAVQSQWVGPSTFSFKAEVDFDGTYLAARLLRMYKPVFLETKDLENDLSLILSWYAEDVTRLVEKEVQEVEEVIRSIYPEAAFIELEPDS 438          
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Match: A0A8K1C8U4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8U4_PYTOL)

HSP 1 Score: 141 bits (355), Expect = 8.890e-37
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    1 GSGLSYATSMAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLAQESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERF-KGPLSEEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS 465
            G G S+ T   +WD ++S  +G LLG VAV L+R+N+ +LLGQS+E EIE+GI ELLLA+ S++ VYAV + W GPS+F+YKA+VDF G+Y A +L   Y   F +    E +L L+L  Y+E++TR++EKEV  ++  I+  Y EA FIE++P S
Sbjct:  300 GIGASHITGNPLWDSIASISIGALLGGVAVTLIRLNQKYLLGQSVEPEIEKGIRELLLARPSIDNVYAVQSQWVGPSTFSYKAEVDFDGTYLAARLLQMYKPVFLEAKDLENDLPLILAWYAEDVTRLVEKEVQEVEEEIRRYYPEAAFIELEPDS 455          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95601.22042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BE64_SAPPC2.770e-3950.63Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
G4ZIG2_PHYSP2.280e-3850.64Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3H3N4_PHYRM2.690e-3850.64Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
W2Q6Y3_PHYPN3.440e-3850.64Uncharacterized protein n=25 Tax=Phytophthora TaxI... [more]
A0A2D4CAD3_PYTIN4.960e-3850.00Zinc transporter, putative n=1 Tax=Pythium insidio... [more]
M4BMY9_HYAAE9.000e-3850.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K3X8I3_GLOUD1.070e-3749.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067CBS9_SAPPC1.440e-3750.63Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A3M6VSY6_9STRA2.920e-3748.72Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A8K1C8U4_PYTOL8.890e-3748.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95601contigM-pyrifera_M_contig95601:264..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue2.2e-33
Seed eggNOG ortholog157072.XP_008869296.1
KEGG koko:K14696
KEGG TC2.A.4.6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG2802@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size465
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.3045704-CDS-M-pyrifera_M_contig95601:263..7011622816870.3045704-CDS-M-pyrifera_M_contig95601:263..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95601 264..701 -
1692278226.968058-CDS-M-pyrifera_M_contig95601:263..7011692278226.968058-CDS-M-pyrifera_M_contig95601:263..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95601 264..701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.3202443-UTR-M-pyrifera_M_contig95601:701..7281622816870.3202443-UTR-M-pyrifera_M_contig95601:701..728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95601 702..728 -
1692278226.9826033-UTR-M-pyrifera_M_contig95601:701..7281692278226.9826033-UTR-M-pyrifera_M_contig95601:701..728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95601 702..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95601.22042.1prot_M-pyrifera_M_contig95601.22042.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95601 264..701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95601.22042.1

>prot_M-pyrifera_M_contig95601.22042.1 ID=prot_M-pyrifera_M_contig95601.22042.1|Name=mRNA_M-pyrifera_M_contig95601.22042.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MAVWDPLSSAGVGLLLGAVAVNLVRMNKSFLLGQSIEKEIEQGIEELLLA
QESVEAVYAVSNTWEGPSSFTYKADVDFCGSYFADKLEARYLERFKGPLS
EEELRLLLREYSENLTRIIEKEVYALQAAIKAQYEEARFIEIQPHS
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mRNA from alignment at M-pyrifera_M_contig95601:264..728-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95601.22042.1 ID=mRNA_M-pyrifera_M_contig95601.22042.1|Name=mRNA_M-pyrifera_M_contig95601.22042.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig95601:264..728- (Macrocystis pyrifera P11B4 male)
GGCAGCGGCCTCAGCTACGCCACCTCCATGGCGGTGTGGGACCCGCTATC AAGTGCTGGAGTGGGCCTGCTGCTGGGCGCGGTGGCGGTGAACCTGGTGC GCATGAACAAGAGCTTCCTGCTGGGCCAGTCGATCGAGAAGGAGATCGAG CAGGGCATCGAGGAGCTGCTGCTCGCCCAGGAGTCGGTCGAGGCCGTCTA CGCCGTCTCCAACACCTGGGAGGGGCCCTCCTCCTTCACCTACAAGGCCG ACGTCGACTTCTGCGGCAGCTACTTTGCCGACAAGCTCGAGGCCCGCTAT CTGGAGCGCTTCAAGGGCCCCCTCTCTGAGGAGGAGCTCCGCCTCCTCCT GCGCGAGTACTCGGAGAACCTCACGCGCATCATCGAGAAGGAGGTCTACG CCCTGCAGGCCGCCATCAAGGCGCAGTACGAGGAGGCCCGCTTCATCGAG ATCCAGCCCCACTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95601:264..728-

>mRNA_M-pyrifera_M_contig95601.22042.1 ID=mRNA_M-pyrifera_M_contig95601.22042.1|Name=mRNA_M-pyrifera_M_contig95601.22042.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig95601:264..728- (Macrocystis pyrifera P11B4 male)
ATGGCGGTGTGGGACCCGCTATCAAGTGCTGGAGTGGGCCTGCTGCTGGG
CGCGGTGGCGGTGAACCTGGTGCGCATGAACAAGAGCTTCCTGCTGGGCC
AGTCGATCGAGAAGGAGATCGAGCAGGGCATCGAGGAGCTGCTGCTCGCC
CAGGAGTCGGTCGAGGCCGTCTACGCCGTCTCCAACACCTGGGAGGGGCC
CTCCTCCTTCACCTACAAGGCCGACGTCGACTTCTGCGGCAGCTACTTTG
CCGACAAGCTCGAGGCCCGCTATCTGGAGCGCTTCAAGGGCCCCCTCTCT
GAGGAGGAGCTCCGCCTCCTCCTGCGCGAGTACTCGGAGAACCTCACGCG
CATCATCGAGAAGGAGGTCTACGCCCTGCAGGCCGCCATCAAGGCGCAGT
ACGAGGAGGCCCGCTTCATCGAGATCCAGCCCCACTCCATGGCGGTGTGG
GACCCGCTATCAAGTGCTGGAGTGGGCCTGCTGCTGGGCGCGGTGGCGGT
GAACCTGGTGCGCATGAACAAGAGCTTCCTGCTGGGCCAGTCGATCGAGA
AGGAGATCGAGCAGGGCATCGAGGAGCTGCTGCTCGCCCAGGAGTCGGTC
GAGGCCGTCTACGCCGTCTCCAACACCTGGGAGGGGCCCTCCTCCTTCAC
CTACAAGGCCGACGTCGACTTCTGCGGCAGCTACTTTGCCGACAAGCTCG
AGGCCCGCTATCTGGAGCGCTTCAAGGGCCCCCTCTCTGAGGAGGAGCTC
CGCCTCCTCCTGCGCGAGTACTCGGAGAACCTCACGCGCATCATCGAGAA
GGAGGTCTACGCCCTGCAGGCCGCCATCAAGGCGCAGTACGAGGAGGCCC
GCTTCATCGAGATCCAGCCCCACTCC
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