mRNA_M-pyrifera_M_contig95583.22034.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95583.22034.1
Unique NamemRNA_M-pyrifera_M_contig95583.22034.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95583.22034.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 7.280e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    7 GASG-AKPKGCLQKVSHVIESRMTIFFSSLGRTVAINPGRTVLLSFIGVIIGMSGFGVLETESRGDKLWLPTGTRA 231
            GAS  AKP  CLQK+SH IESRM  FFS LG  VAI+PG+TVLL+ +GV+IG SGF  LE ESRGDKLW+P+GTRA
Sbjct:    5 GASAEAKPATCLQKMSHAIESRMHAFFSRLGELVAIHPGKTVLLALVGVLIGASGFTTLEQESRGDKLWVPSGTRA 80
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BLAST of mRNA_M-pyrifera_M_contig95583.22034.1 vs. uniprot
Match: A0A7S1XPY4_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPY4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    7 GASGAKPKG-----CLQKVSHVIESRMTIFFSSLGRTVAINPGRTVLLSFIGVIIGMSGFGV-LETESRGDKLWLPTGTRA 231
            G S A  KG        K+++ ++S+M   F+ LG  VA NP RT++++F+   + + G     +TESRG+KLW+P  T+A
Sbjct:   27 GRSNAAEKGEGEVSMAGKMANFVDSKMNDAFTKLGLAVATNPWRTIVVAFVVFFLTVMGAVFNFQTESRGEKLWIPQNTQA 107
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BLAST of mRNA_M-pyrifera_M_contig95583.22034.1 vs. uniprot
Match: A0A7S1G6H7_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6H7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.700e-5
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:    4 AGASGAKPKGCLQKVSHVIESRMTIFFSSLGRTVAINPGRTVLLSFIGVIIGMSGFGVLETESRGDKLWLPTG 222
            AG+ G    G L ++S  ++  +   F  LG+  A  PG  +  + +  +  M+G G LE+ESR +KLW P+G
Sbjct:   17 AGSEG----GVLARLSRKVDVGLATAFGKLGKLTATRPGTVIACTLVLFMATMAGIGQLESESRSEKLWAPSG 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95583.22034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGH1_9PHAE7.280e-2569.74SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1XPY4_9STRA7.450e-737.04Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S1G6H7_9STRA1.700e-534.25Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95583contigM-pyrifera_M_contig95583:152..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D7FVR4
Preferred namePTCHD3
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.8013573-CDS-M-pyrifera_M_contig95583:151..3821622816869.8013573-CDS-M-pyrifera_M_contig95583:151..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95583 152..382 -
1692278226.6136894-CDS-M-pyrifera_M_contig95583:151..3821692278226.6136894-CDS-M-pyrifera_M_contig95583:151..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95583 152..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95583.22034.1prot_M-pyrifera_M_contig95583.22034.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95583 152..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95583.22034.1

>prot_M-pyrifera_M_contig95583.22034.1 ID=prot_M-pyrifera_M_contig95583.22034.1|Name=mRNA_M-pyrifera_M_contig95583.22034.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MAGASGAKPKGCLQKVSHVIESRMTIFFSSLGRTVAINPGRTVLLSFIGV
IIGMSGFGVLETESRGDKLWLPTGTRA
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mRNA from alignment at M-pyrifera_M_contig95583:152..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95583.22034.1 ID=mRNA_M-pyrifera_M_contig95583.22034.1|Name=mRNA_M-pyrifera_M_contig95583.22034.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig95583:152..382- (Macrocystis pyrifera P11B4 male)
ATGGCCGGCGCGTCCGGGGCGAAGCCGAAGGGATGCCTCCAAAAGGTTTC
CCATGTCATCGAGTCCAGGATGACGATTTTTTTTTCGTCACTGGGACGGA
CGGTGGCGATCAACCCCGGGCGGACGGTGCTGCTCTCCTTTATTGGCGTC
ATCATCGGCATGTCCGGATTCGGGGTCCTGGAGACGGAGTCGAGGGGGGA
CAAGCTCTGGCTGCCCACGGGGACCCGCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95583:152..382-

>mRNA_M-pyrifera_M_contig95583.22034.1 ID=mRNA_M-pyrifera_M_contig95583.22034.1|Name=mRNA_M-pyrifera_M_contig95583.22034.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig95583:152..382- (Macrocystis pyrifera P11B4 male)
ATGGCCGGCGCGTCCGGGGCGAAGCCGAAGGGATGCCTCCAAAAGGTTTC
CCATGTCATCGAGTCCAGGATGACGATTTTTTTTTCGTCACTGGGACGGA
CGGTGGCGATCAACCCCGGGCGGACGGTGCTGCTCTCCTTTATTGGCGTC
ATCATCGGCATGTCCGGATTCGGGGTCCTGGAGACGGAGTCGAGGGGGGA
CAAGCTCTGGCTGCCCACGGGGACCCGCGCTATGGCCGGCGCGTCCGGGG
CGAAGCCGAAGGGATGCCTCCAAAAGGTTTCCCATGTCATCGAGTCCAGG
ATGACGATTTTTTTTTCGTCACTGGGACGGACGGTGGCGATCAACCCCGG
GCGGACGGTGCTGCTCTCCTTTATTGGCGTCATCATCGGCATGTCCGGAT
TCGGGGTCCTGGAGACGGAGTCGAGGGGGGACAAGCTCTGGCTGCCCACG
GGGACCCGCGCT
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