mRNA_M-pyrifera_M_contig95552.22030.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95552.22030.1
Unique NamemRNA_M-pyrifera_M_contig95552.22030.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95552.22030.1 vs. uniprot
Match: A0A7S1G983_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G983_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.400e-37
Identity = 87/232 (37.50%), Postives = 136/232 (58.62%), Query Frame = 1 
Query:   13 LRPVANSIVPAAVAMLNSVTPVVLTFLTHVVERWDSAADETGWLVWRLFTARLTSVLVLWLTFAALADPYLLRGRTLPFLASDPAFLQNLRASLARRFLPEAYRCRVDQAGAGLLTILAIEFIASKAVLLSYPLGALAWSLLTRTPYRKPEIDIANRMAALIYTLLVGIMCSSYVPLAPAITALVLLANFKAERFAVETWMQKPLRPWR----GGAAIIIVFLRLFLISVGV 696
            L P A+ IVP AV++LN++ P +LT L+   E+WDS   +   LVWRLF A++ ++L+   +FA LADPY+LRG T  F  SD  FL ++R S  +RF P++Y CR DQAGAG+  ++  EF+ SK + L+ P    A + + +  ++K +  +A  MAAL++   + +    + P    +  ++L   FK E F +  +  KPLRPW     GG      F++ +LIS+ +
Sbjct:  468 LAPFADFIVPVAVSVLNALQPPILTALSKF-EKWDSGGTQVKTLVWRLFIAKMLNMLLQIFSFAQLADPYMLRGPTFGF--SDTDFLVSVRQSTQKRFQPDSYACRADQAGAGIFQLVLAEFVVSKVIALATPFAFKALARVRKRVWKKAQHSVAQAMAALLFFTQLVMNSFPWTPFTAVVNTVLLYLTFKFEVFILRRFQVKPLRPWSAKDAGG-----FFVKFYLISLSI 691
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BLAST of mRNA_M-pyrifera_M_contig95552.22030.1 vs. uniprot
Match: A0A6G0WNY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNY5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.670e-18
Identity = 71/220 (32.27%), Postives = 118/220 (53.64%), Query Frame = 1 
Query:   13 LRPVANSIVPAAVAMLNSVTPVVLTFLTHVVERWDSAADETGWLVWRLFTARLTSVLVLWLTFAALADPYLLRGRT-LPFLASDPAFLQNLRASLARRFLPEAYRCRVDQAGAGLLTILAIEFIASKAVLLSYPLGALAWSLLTR-TPYRKPEIDIAN--RMAALIYTLLVGIM--CSSY---VPLAP--AITALVLL-ANFKAERFAVETWMQKPLRPW 636
            L   A SIVP   A++N   P +++ LT   ERWD    E   +V RLF A++ ++L+   ++  L DPYL    T L      P+F+   R+++  +F  + Y CR +Q  +GL+ ++  +F+ SK   +   L A    L+ +    RK  + + N  R   LI   +V +M  C+ Y   +PLAP  A+T+L++L  NFK ++F ++ + +KP+ PW
Sbjct:  438 LTAYAASIVPLGAAVINGALPAIISILTKF-ERWDDQGFEIKAMVTRLFLAKVLNILIQLWSYGMLLDPYLYTENTALLDWMPIPSFV---RSNVMIKFKSDVYSCRAEQVASGLIILVLTDFVVSKVSAIVTALLAKVIELIKQWNAKRKKRVIVVNDTRTEFLIAPKMVALMYSCTLYQFSIPLAPVTAVTSLMMLIVNFKFDKFYLQKFQKKPITPW 653
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95552.22030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1G983_9STRA8.400e-3737.50Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0WNY5_9STRA9.670e-1832.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95552contigM-pyrifera_M_contig95552:2..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog4792.ETI32815
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CT9D@1,2RFG2@2759,3QGUY@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.3989816-CDS-M-pyrifera_M_contig95552:1..6971622816869.3989816-CDS-M-pyrifera_M_contig95552:1..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95552 2..697 -
1692278226.283117-CDS-M-pyrifera_M_contig95552:1..6971692278226.283117-CDS-M-pyrifera_M_contig95552:1..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95552 2..697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95552.22030.1prot_M-pyrifera_M_contig95552.22030.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95552 2..697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95552.22030.1

>prot_M-pyrifera_M_contig95552.22030.1 ID=prot_M-pyrifera_M_contig95552.22030.1|Name=mRNA_M-pyrifera_M_contig95552.22030.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
QLAFLRPVANSIVPAAVAMLNSVTPVVLTFLTHVVERWDSAADETGWLVW
RLFTARLTSVLVLWLTFAALADPYLLRGRTLPFLASDPAFLQNLRASLAR
RFLPEAYRCRVDQAGAGLLTILAIEFIASKAVLLSYPLGALAWSLLTRTP
YRKPEIDIANRMAALIYTLLVGIMCSSYVPLAPAITALVLLANFKAERFA
VETWMQKPLRPWRGGAAIIIVFLRLFLISVGV
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mRNA from alignment at M-pyrifera_M_contig95552:2..697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95552.22030.1 ID=mRNA_M-pyrifera_M_contig95552.22030.1|Name=mRNA_M-pyrifera_M_contig95552.22030.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig95552:2..697- (Macrocystis pyrifera P11B4 male)
CAGCTCGCCTTCCTCCGGCCCGTCGCAAACTCCATCGTGCCCGCCGCAGT
CGCCATGCTCAACTCGGTCACGCCAGTCGTCCTCACCTTCCTCACCCACG
TCGTCGAACGCTGGGACAGCGCCGCAGACGAGACCGGGTGGCTCGTCTGG
CGGCTCTTCACCGCCAGGCTCACCTCCGTCCTCGTCCTCTGGCTCACCTT
TGCGGCCCTCGCAGACCCGTACCTGCTCCGGGGACGCACGCTGCCCTTCC
TGGCCTCCGATCCGGCCTTTCTCCAAAACCTCCGTGCCTCGCTCGCAAGA
CGGTTCCTCCCGGAAGCCTACCGCTGCCGCGTGGACCAGGCCGGGGCGGG
TTTGCTCACCATCCTGGCCATCGAGTTCATCGCTTCCAAGGCCGTGCTGC
TGTCCTACCCGCTGGGTGCCCTGGCCTGGTCGCTGCTCACGCGGACGCCG
TACCGCAAGCCTGAGATCGACATTGCCAACCGCATGGCTGCTCTCATCTA
CACGCTGCTCGTGGGCATCATGTGCTCCTCCTACGTGCCGCTCGCTCCCG
CCATCACGGCGCTCGTGCTGCTGGCCAACTTCAAGGCCGAGCGGTTCGCC
GTGGAGACTTGGATGCAGAAGCCGCTTCGCCCCTGGCGCGGCGGCGCAGC
CATCATCATCGTCTTCCTCCGACTCTTCCTCATCTCGGTCGGCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95552:2..697-

>mRNA_M-pyrifera_M_contig95552.22030.1 ID=mRNA_M-pyrifera_M_contig95552.22030.1|Name=mRNA_M-pyrifera_M_contig95552.22030.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig95552:2..697- (Macrocystis pyrifera P11B4 male)
CAGCTCGCCTTCCTCCGGCCCGTCGCAAACTCCATCGTGCCCGCCGCAGT
CGCCATGCTCAACTCGGTCACGCCAGTCGTCCTCACCTTCCTCACCCACG
TCGTCGAACGCTGGGACAGCGCCGCAGACGAGACCGGGTGGCTCGTCTGG
CGGCTCTTCACCGCCAGGCTCACCTCCGTCCTCGTCCTCTGGCTCACCTT
TGCGGCCCTCGCAGACCCGTACCTGCTCCGGGGACGCACGCTGCCCTTCC
TGGCCTCCGATCCGGCCTTTCTCCAAAACCTCCGTGCCTCGCTCGCAAGA
CGGTTCCTCCCGGAAGCCTACCGCTGCCGCGTGGACCAGGCCGGGGCGGG
TTTGCTCACCATCCTGGCCATCGAGTTCATCGCTTCCAAGGCCGTGCTGC
TGTCCTACCCGCTGGGTGCCCTGGCCTGGTCGCTGCTCACGCGGACGCCG
TACCGCAAGCCTGAGATCGACATTGCCAACCGCATGGCTGCTCTCATCTA
CACGCTGCTCGTGGGCATCATGTGCTCCTCCTACGTGCCGCTCGCTCCCG
CCATCACGGCGCTCGTGCTGCTGGCCAACTTCAAGGCCGAGCGGTTCGCC
GTGGAGACTTGGATGCAGAAGCCGCTTCGCCCCTGGCGCGGCGGCGCAGC
CATCATCATCGTCTTCCTCCGACTCTTCCTCATCTCGGTCGGCGTCCAGC
TCGCCTTCCTCCGGCCCGTCGCAAACTCCATCGTGCCCGCCGCAGTCGCC
ATGCTCAACTCGGTCACGCCAGTCGTCCTCACCTTCCTCACCCACGTCGT
CGAACGCTGGGACAGCGCCGCAGACGAGACCGGGTGGCTCGTCTGGCGGC
TCTTCACCGCCAGGCTCACCTCCGTCCTCGTCCTCTGGCTCACCTTTGCG
GCCCTCGCAGACCCGTACCTGCTCCGGGGACGCACGCTGCCCTTCCTGGC
CTCCGATCCGGCCTTTCTCCAAAACCTCCGTGCCTCGCTCGCAAGACGGT
TCCTCCCGGAAGCCTACCGCTGCCGCGTGGACCAGGCCGGGGCGGGTTTG
CTCACCATCCTGGCCATCGAGTTCATCGCTTCCAAGGCCGTGCTGCTGTC
CTACCCGCTGGGTGCCCTGGCCTGGTCGCTGCTCACGCGGACGCCGTACC
GCAAGCCTGAGATCGACATTGCCAACCGCATGGCTGCTCTCATCTACACG
CTGCTCGTGGGCATCATGTGCTCCTCCTACGTGCCGCTCGCTCCCGCCAT
CACGGCGCTCGTGCTGCTGGCCAACTTCAAGGCCGAGCGGTTCGCCGTGG
AGACTTGGATGCAGAAGCCGCTTCGCCCCTGGCGCGGCGGCGCAGCCATC
ATCATCGTCTTCCTCCGACTCTTCCTCATCTCGGTCGGCGTC
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