mRNA_M-pyrifera_M_contig110496.2196.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110496.2196.1
Unique NamemRNA_M-pyrifera_M_contig110496.2196.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A7S4I5A1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5A1_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-19
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFRLQTEVLVATNKDLRIVAMYFRVAFFGSRFGVEDGKAYVYRCGPKENLMTMQQRLKA 330
            LE+  K + +++   ++   +E+   L+ +L++ Y  ++   +L  CL E+   T+ LV  NKD R+ A YFRVAF+G+ FG E  +A++YR  PKENLMTMQQ LK+
Sbjct:   99 LENIIKYIRKSIEFAQKGLLFEVSLSLFAMLVQIYTNSQMLTELTVCLKEYSECTQDLVQANKDTRLFATYFRVAFYGNGFGEESNRAFIYRMKPKENLMTMQQYLKS 206          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A087TPV2_STEMI (Dedicator of cytokinesis protein 9 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TPV2_STEMI)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-8
Identity = 33/107 (30.84%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   10 ESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFRLQTEVLVATNKD-LRIVAMYFRVAFFGSRFGVED-GKAYVYRCGPKENLMTMQQRL 324
            E+  K + + + +++QA++YE+  E+Y L++  Y++ +NY  L+ C          +V  N+   R++  Y+RVAFFG  + VE+ GK Y+Y+     +L  + +RL
Sbjct:  648 ETLLKSLEKCVKMLEQAERYEVMPEVYKLIIPIYEEQRNYEALLLCYKTLHNAYAKIVDVNRTGRRLLGKYYRVAFFGQAYFVEEAGKEYIYKEPKVTSLAEISERL 754          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: UPI000719D395 (dedicator of cytokinesis protein 9-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D395)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-7
Identity = 27/94 (28.72%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   49 MKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEF-RLQTEVLVATNKDLRIVAMYFRVAFFGSRFGVEDGKAYVYRCGPKENLMTMQQRLK 327
            + +A+++E+  E+Y L++  Y++ +NY  + +   +  +  ++V+    +  R++  +FRVAF+G  F +EDGK Y+Y+     NL  + +RL+
Sbjct: 1582 LDKAERWEMMGEVYKLIIPIYEKQRNYQAISEAYGKLHQAYSKVVDVLQQGKRLLGTFFRVAFYGQHFDMEDGKEYIYKEPKVTNLAEISERLR 1675          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: UPI00106BDB9E (dedicator of cytokinesis protein 9-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BDB9E)

HSP 1 Score: 57.0 bits (136), Expect = 4.010e-7
Identity = 30/94 (31.91%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   46 LMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEF-RLQTEVLVATNKDLRIVAMYFRVAFFGSRFGVEDGKAYVYRCGPKENLMTMQQRL 324
            L+ QA++YE+  E+Y L++  Y+Q +N+  L        +  ++V+ A     R++  YFRVAFFG  FG+++ K ++Y+     +L  +  RL
Sbjct: 1671 LLAQAERYEVTGEIYKLVIPVYEQDRNFNALSIAYNNLSQAYSKVVAAMASRKRLLGSYFRVAFFGEEFGLDNRKQFIYKEPKVTSLSEISSRL 1764          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: UPI001C4D1641 (guanine nucleotide exchange factor SPIKE 1-like isoform X1 n=6 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D1641)

HSP 1 Score: 53.5 bits (127), Expect = 6.580e-6
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFR-LQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+RV F+G+RFG  D K YVYR
Sbjct: 1508 VDSAVKYLQLANKLFSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLSSIYDSILEQESSPITFIDATYYRVGFYGTRFGKLDRKEYVYR 1601          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A444FR67_ENSVE (DOCKER domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FR67_ENSVE)

HSP 1 Score: 53.1 bits (126), Expect = 7.910e-6
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFR-LQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+RV F+G+RFG  D K YVYR
Sbjct:   25 VDSAVKYLQLANKLFSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLASIYDSILEQESSPIPFIDATYYRVGFYGNRFGKLDRKEYVYR 118          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A426Z2F7_ENSVE (DOCKER domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426Z2F7_ENSVE)

HSP 1 Score: 53.1 bits (126), Expect = 8.250e-6
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFR-LQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+RV F+G+RFG  D K YVYR
Sbjct:  149 VDSAVKYLQLANKLFSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLASIYDSILEQESSPIPFIDATYYRVGFYGNRFGKLDRKEYVYR 242          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A199VH42_ANACO (Guanine nucleotide exchange factor Spike 1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VH42_ANACO)

HSP 1 Score: 53.1 bits (126), Expect = 8.970e-6
Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEF-RLQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+RV F+G RFG  D K YVYR
Sbjct: 1491 VDSAVKYLQLANKLFSQAELYHFCASILELIIPVYKSRRAYGQLAKCHTSLTNIYESILEQESSPIPFIDATYYRVGFYGERFGKLDRKEYVYR 1584          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A6I9R807_ELAGV (guanine nucleotide exchange factor SPIKE 1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R807_ELAGV)

HSP 1 Score: 52.8 bits (125), Expect = 1.220e-5
Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEF-RLQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+RV F+G RFG  D K YVYR
Sbjct: 1491 VDSAVKYLQLANKLFAQAELYHFCASILELIIPVYKSRRAYGQLAKCHTSLTNIYESILEQESSPIPFIDATYYRVGFYGDRFGKLDRKEYVYR 1584          
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Match: A0A4V4H4V5_MUSBA (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A4V4H4V5_MUSBA)

HSP 1 Score: 52.8 bits (125), Expect = 1.220e-5
Identity = 30/94 (31.91%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    7 LESFTKMVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFR-LQTEVLVATNKDLRIV-AMYFRVAFFGSRFGVEDGKAYVYR 282
            ++S  K +  A  L  QA+ Y  C  +  L++  YK  + Y +L  C T    +   +L   +  +  + A Y+R+ F+G+RFG  D K YVYR
Sbjct: 1506 VDSAVKYLQLANKLFSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLASIYDSILEQESSPIPFIDATYYRIGFYGNRFGKLDRKEYVYR 1599          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110496.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I5A1_9EUKA1.780e-1940.74Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A087TPV2_STEMI1.720e-830.84Dedicator of cytokinesis protein 9 (Fragment) n=1 ... [more]
UPI000719D3951.580e-728.72dedicator of cytokinesis protein 9-like n=1 Tax=Pr... [more]
UPI00106BDB9E4.010e-731.91dedicator of cytokinesis protein 9-like isoform X1... [more]
UPI001C4D16416.580e-632.98guanine nucleotide exchange factor SPIKE 1-like is... [more]
A0A444FR67_ENSVE7.910e-632.98DOCKER domain-containing protein n=1 Tax=Ensete ve... [more]
A0A426Z2F7_ENSVE8.250e-632.98DOCKER domain-containing protein n=1 Tax=Ensete ve... [more]
A0A199VH42_ANACO8.970e-632.98Guanine nucleotide exchange factor Spike 1 n=1 Tax... [more]
A0A6I9R807_ELAGV1.220e-532.98guanine nucleotide exchange factor SPIKE 1 n=4 Tax... [more]
A0A4V4H4V5_MUSBA1.220e-531.91Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110496contigM-pyrifera_M_contig110496:171..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog5786.XP_003285837.1
KEGG koko:K21852
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the DOCK family
EggNOG OGs3X98I@554915,KOG1997@1,KOG1997@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size330
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.1203809-CDS-M-pyrifera_M_contig110496:170..4761622815616.1203809-CDS-M-pyrifera_M_contig110496:170..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110496 171..476 -
1692277488.938635-CDS-M-pyrifera_M_contig110496:170..4761692277488.938635-CDS-M-pyrifera_M_contig110496:170..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110496 171..476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.1359823-UTR-M-pyrifera_M_contig110496:476..5001622815616.1359823-UTR-M-pyrifera_M_contig110496:476..500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110496 477..500 -
1692277488.9488952-UTR-M-pyrifera_M_contig110496:476..5001692277488.9488952-UTR-M-pyrifera_M_contig110496:476..500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110496 477..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110496.2196.1prot_M-pyrifera_M_contig110496.2196.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110496 171..476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110496.2196.1

>prot_M-pyrifera_M_contig110496.2196.1 ID=prot_M-pyrifera_M_contig110496.2196.1|Name=mRNA_M-pyrifera_M_contig110496.2196.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MVHEALLLMKQAKQYELCTELYCLLLEAYKQAKNYPKLMDCLTEFRLQTE
VLVATNKDLRIVAMYFRVAFFGSRFGVEDGKAYVYRCGPKENLMTMQQRL
KA
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mRNA from alignment at M-pyrifera_M_contig110496:171..500-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110496.2196.1 ID=mRNA_M-pyrifera_M_contig110496.2196.1|Name=mRNA_M-pyrifera_M_contig110496.2196.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig110496:171..500- (Macrocystis pyrifera P11B4 male)
TGGGACCTGGAGAGCTTCACGAAGATGGTGCACGAGGCGCTCCTCCTCAT GAAGCAGGCCAAGCAGTACGAGCTCTGCACCGAGCTCTACTGTCTGCTGC TGGAGGCCTACAAGCAGGCCAAGAACTACCCCAAGCTCATGGACTGCCTC ACAGAGTTCCGCCTGCAGACAGAGGTGTTGGTGGCGACCAACAAGGACCT CCGCATCGTCGCCATGTACTTCCGCGTCGCCTTCTTCGGCTCTCGCTTCG GCGTCGAGGACGGCAAGGCCTACGTCTACCGCTGCGGCCCCAAGGAAAAC CTCATGACCATGCAGCAGCGCCTCAAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110496:171..500-

>mRNA_M-pyrifera_M_contig110496.2196.1 ID=mRNA_M-pyrifera_M_contig110496.2196.1|Name=mRNA_M-pyrifera_M_contig110496.2196.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig110496:171..500- (Macrocystis pyrifera P11B4 male)
ATGGTGCACGAGGCGCTCCTCCTCATGAAGCAGGCCAAGCAGTACGAGCT
CTGCACCGAGCTCTACTGTCTGCTGCTGGAGGCCTACAAGCAGGCCAAGA
ACTACCCCAAGCTCATGGACTGCCTCACAGAGTTCCGCCTGCAGACAGAG
GTGTTGGTGGCGACCAACAAGGACCTCCGCATCGTCGCCATGTACTTCCG
CGTCGCCTTCTTCGGCTCTCGCTTCGGCGTCGAGGACGGCAAGGCCTACG
TCTACCGCTGCGGCCCCAAGGAAAACCTCATGACCATGCAGCAGCGCCTC
AAGGCCATGGTGCACGAGGCGCTCCTCCTCATGAAGCAGGCCAAGCAGTA
CGAGCTCTGCACCGAGCTCTACTGTCTGCTGCTGGAGGCCTACAAGCAGG
CCAAGAACTACCCCAAGCTCATGGACTGCCTCACAGAGTTCCGCCTGCAG
ACAGAGGTGTTGGTGGCGACCAACAAGGACCTCCGCATCGTCGCCATGTA
CTTCCGCGTCGCCTTCTTCGGCTCTCGCTTCGGCGTCGAGGACGGCAAGG
CCTACGTCTACCGCTGCGGCCCCAAGGAAAACCTCATGACCATGCAGCAG
CGCCTCAAGGCC
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