mRNA_M-pyrifera_M_contig11049.2193.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11049.2193.1
Unique NamemRNA_M-pyrifera_M_contig11049.2193.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11049.2193.1 vs. uniprot
Match: D8LGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU4_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 6.040e-35
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 GLVTLFLDKEREYLCWCPPGAAELVPDERYRIDVRLLEEVIPGDGLHPRHLSLRASGRPNPLVFELDSNELYDVVSQVI 237
            GLVTLFLDKERE LCWCPPGAAELVPDERY + VR L EV+PGD +HPR LSLR++GR NPLVFELDS++LYD++SQ I
Sbjct:  339 GLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSAGRANPLVFELDSDDLYDILSQGI 417
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BLAST of mRNA_M-pyrifera_M_contig11049.2193.1 vs. uniprot
Match: A0A6H5L4E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.130e-34
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 GLVTLFLDKEREYLCWCPPGAAELVPDERYRIDVRLLEEVIPGDGLHPRHLSLRASGRPNPLVFELDSNELYDVVSQVI 237
            GLVTLFLDKERE LCWCPPGAAELVPDERY + VR L EV+PGD +HPR LSLR++GR NPLVFELDS++LYD++S+ I
Sbjct:  358 GLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSTGRANPLVFELDSDDLYDILSEGI 436
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11049.2193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGU4_ECTSI6.040e-3577.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E4_9PHAE2.130e-3475.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11049contigM-pyrifera_M_contig11049:9138..9946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001220.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.9741943-CDS-M-pyrifera_M_contig11049:9137..92571622815615.9741943-CDS-M-pyrifera_M_contig11049:9137..9257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11049 9138..9257 -
1692277488.846934-CDS-M-pyrifera_M_contig11049:9137..92571692277488.846934-CDS-M-pyrifera_M_contig11049:9137..9257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11049 9138..9257 -
1622815615.990008-CDS-M-pyrifera_M_contig11049:9829..99461622815615.990008-CDS-M-pyrifera_M_contig11049:9829..9946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11049 9830..9946 -
1692277488.8584917-CDS-M-pyrifera_M_contig11049:9829..99461692277488.8584917-CDS-M-pyrifera_M_contig11049:9829..9946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11049 9830..9946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11049.2193.1prot_M-pyrifera_M_contig11049.2193.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11049 9138..9946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11049.2193.1

>prot_M-pyrifera_M_contig11049.2193.1 ID=prot_M-pyrifera_M_contig11049.2193.1|Name=mRNA_M-pyrifera_M_contig11049.2193.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
GLVTLFLDKEREYLCWCPPGAAELVPDERYRIDVRLLEEVIPGDGLHPRH
LSLRASGRPNPLVFELDSNELYDVVSQVI
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mRNA from alignment at M-pyrifera_M_contig11049:9138..9946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11049.2193.1 ID=mRNA_M-pyrifera_M_contig11049.2193.1|Name=mRNA_M-pyrifera_M_contig11049.2193.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=809bp|location=Sequence derived from alignment at M-pyrifera_M_contig11049:9138..9946- (Macrocystis pyrifera P11B4 male)
GGCCTGGTAACGCTGTTCCTAGACAAAGAGCGAGAGTACTTGTGCTGGTG
CCCACCAGGCGCGGCGGAACTGGTGCCGGATGAGCGGTACCGCATCGACG
TCCGCCTGTTGGAGGAGGTGAGTGTCATTTTGGGGAAAAACCAGTCTAAT
TCCAAGTGATTTGTCCCCGAAACGGGACTGGGGTCCCAAGTGGGTTAATG
GCCTATATATGTTCGATGTACATATGTAGCTGCAGAGTATATTACTGTAT
AACGGCGGACGATATTAAATAGGGCCTACGGTACACACGAAAACCTATAT
GTAGTTCGCTATTTTTTCTGACAACATTTGGTCCTATTTACTATGGTCCT
CCGTAATACTGGTGACCAATTTAGATTGCACTATTATGGTACAAGTACGC
AAGTAAAACAACACGATCAAAGGTATAACGATGGTTGAACATCGTGGTTG
AGGCGTGGTGGTCCGCGAGAGTAAACTACGTGGTAGCCCCGTCGAATCAC
GAGCAGGTACAACAAAATACGACACAGGTGAAAACAACGTGATAAAAGGT
ACCAGGTATAACGATTGGTTGGGTAAATGTTGGTAGATTGCGCTATGCGA
TGCGACGTTATCCTTGTACACCACCTGGTATATCGGACGGACTTGAGTGC
TCGCATTGATGACGCGCTTCTGGCGTGATATCATGGCAGGTGATACCCGG
TGATGGTCTGCACCCGCGCCACCTGTCGCTCCGAGCCTCCGGACGGCCAA
ATCCATTGGTCTTCGAGCTTGACTCGAACGAGCTCTACGACGTCGTCTCT
CAGGTGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11049:9138..9946-

>mRNA_M-pyrifera_M_contig11049.2193.1 ID=mRNA_M-pyrifera_M_contig11049.2193.1|Name=mRNA_M-pyrifera_M_contig11049.2193.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig11049:9138..9946- (Macrocystis pyrifera P11B4 male)
GGCCTGGTAACGCTGTTCCTAGACAAAGAGCGAGAGTACTTGTGCTGGTG
CCCACCAGGCGCGGCGGAACTGGTGCCGGATGAGCGGTACCGCATCGACG
TCCGCCTGTTGGAGGAGGGCCTGGTAACGCTGTTCCTAGACAAAGAGCGA
GAGTACTTGTGCTGGTGCCCACCAGGCGCGGCGGAACTGGTGCCGGATGA
GCGGTACCGCATCGACGTCCGCCTGTTGGAGGAGGTGATACCCGGTGATG
GTCTGCACCCGCGCCACCTGTCGCTCCGAGCCTCCGGACGGCCAAATCCA
TTGGTCTTCGAGCTTGACTCGAACGAGCTCTACGACGTCGTCTCTCAGGT
GATTGTGATACCCGGTGATGGTCTGCACCCGCGCCACCTGTCGCTCCGAG
CCTCCGGACGGCCAAATCCATTGGTCTTCGAGCTTGACTCGAACGAGCTC
TACGACGTCGTCTCTCAGGTGATT
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