mRNA_M-pyrifera_M_contig94998.21921.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94998.21921.1
Unique NamemRNA_M-pyrifera_M_contig94998.21921.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A7S0D2F8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D2F8_MICPS)

HSP 1 Score: 86.3 bits (212), Expect = 6.740e-18
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 258
            +STL+VEG+P DAT RE+AH+FRPFE +R TRL+       PLCF EF+D   A      +QGY  D + P S  LR++FA+ + R+
Sbjct:  351 SSTLYVEGVPADATRREMAHVFRPFEGFRSTRLVAKENVRGPLCFAEFDDARCASKAKDTLQGYLIDRDAPESGALRVSFAKTQDRK 437          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: C1N3E4_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3E4_MICPC)

HSP 1 Score: 80.1 bits (196), Expect = 1.120e-17
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    7 TLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPR 255
            TL++EG+P DAT RE+AHIFRPF+ ++ TRL+       PLCF EF     A   ++ +QGY  D + P S  LRI FA+ K R
Sbjct:   18 TLYIEGVPHDATVREIAHIFRPFDGFQSTRLVKKENVRGPLCFAEFAGADLAFAALNTLQGYVLDRDDPKSPALRIVFAKSKGR 101          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0CCE1_PARTE (RRM domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CCE1_PARTE)

HSP 1 Score: 78.6 bits (192), Expect = 7.030e-17
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPP---RGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGSTLRITFARD 246
            T +L+V+G+P DA EREVAHIFRP+  ++R RLI     +GR + LCFV+F+D   A  V+  +QGY+FD+N   + L+I FA +
Sbjct:   32 THSLYVDGIPNDAQEREVAHIFRPYPGFQRVRLIKKQTQKGREYLLCFVDFDDAFQATIVMQTLQGYRFDKN-DKTGLKIYFANN 115          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A1D1Y0X0_9ARAE (Protein WHI3 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y0X0_9ARAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI--PPR---GRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 243
            +STLFVEGLP+D TEREVAHIFRPF  ++  RL+   P+   G +  LCFV+F D   A   +  ++GY+ D + P S  LR+ FAR
Sbjct:  159 SSTLFVEGLPRDCTEREVAHIFRPFVGFKEVRLVIKEPKYHSGSSLLLCFVDFIDAACAMTALIALEGYKMDAHDPDSPALRVQFAR 245          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A1U7Z8M7_NELNU (RNA-binding protein 1-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z8M7_NELNU)

HSP 1 Score: 77.0 bits (188), Expect = 2.940e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRG--RAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGST-LRITFAR 243
            ++ LFV+GLP D T REVAH+FRPF  ++  R++   P R   +A  LCFVEF+D   A   +  +QGY+FD+  P S  LRI FAR
Sbjct:  134 SNILFVDGLPNDCTRREVAHLFRPFIGFKEIRVVHKEPRRSGDKAMVLCFVEFDDAKCALTALEALQGYKFDDKKPDSPDLRIQFAR 220          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A5A8EDP5_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDP5_CAFRO)

HSP 1 Score: 78.6 bits (192), Expect = 3.660e-15
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPP---RGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGST-LRITFARDKPR 255
            T+TL++EG+P DA+ERE+AH+FRPF+ +   RL+P     GR   LCF EF     A   + VI  Y  D    GS  LRI+FAR  PR
Sbjct:  206 TATLYIEGVPDDASERELAHLFRPFDGFEAARLVPHGGRNGRKMYLCFAEFRSPVEAFAAMQVIHNYDIDPRESGSKRLRISFARKPPR 294          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A2K1KI41_PHYPA (RRM domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI41_PHYPA)

HSP 1 Score: 76.6 bits (187), Expect = 9.090e-15
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPR-----GRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 243
            +STLFV+GLPQD + RE AHIFRPF  ++  RL+        G    LCFVEF D   A   +  +QGY+FDE    S  LR+TFAR
Sbjct:  179 SSTLFVDGLPQDCSRREAAHIFRPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLRLTFAR 265          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI00098DF4B7 (nuclear speckle RNA-binding protein A-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DF4B7)

HSP 1 Score: 75.5 bits (184), Expect = 1.070e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGR-----AFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 243
            ++ LFV+GLP D T REVAH+FRPF  ++  R++    R     A+ LCFVEF D   A   +  +QGY+FD+  P +  LRI FA+
Sbjct:  131 SNILFVDGLPNDCTRREVAHLFRPFIGFKEIRVVHKEARRSGDKAYVLCFVEFNDSKCALTAMDALQGYKFDDKKPNAPVLRIQFAK 217          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI00109F73CA (RNA-binding protein 2 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F73CA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRGRAFP--LCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 258
            ++TLFVEGLP+DATERE+AHIFRPF  Y+  R++   P     +P  LCFV+F     A   ++ ++GY+ D + P S  LR+ FA+   RR
Sbjct:  160 SNTLFVEGLPRDATEREIAHIFRPFRGYKEVRVVKKEPKYDGGYPALLCFVDFTTPSFAMTAMNAVEGYKMDLHDPDSWALRLQFAKFPGRR 251          
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI0009E2600A (RNA-binding protein 2-like isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2600A)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRGRAFP--LCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 258
            ++TLFVEGLP+D TERE+AHIFRPF  Y+  R++   P    A P  LCFV+F     A   +S ++GY+ D + P S  LR+ FA+   RR
Sbjct:  160 SNTLFVEGLPRDTTEREIAHIFRPFRGYKEVRVVKKEPKYDGANPIILCFVDFTTPSYAMAAMSAVEGYKMDLHDPDSWALRLQFAKFPARR 251          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0D2F8_MICPS6.740e-1848.28Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1N3E4_MICPC1.120e-1747.62Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0CCE1_PARTE7.030e-1748.24RRM domain-containing protein n=2 Tax=Paramecium t... [more]
A0A1D1Y0X0_9ARAE1.040e-1549.43Protein WHI3 n=1 Tax=Anthurium amnicola TaxID=1678... [more]
A0A1U7Z8M7_NELNU2.940e-1548.28RNA-binding protein 1-like n=1 Tax=Nelumbo nucifer... [more]
A0A5A8EDP5_CAFRO3.660e-1547.19Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A2K1KI41_PHYPA9.090e-1549.43RRM domain-containing protein n=3 Tax=Physcomitriu... [more]
UPI00098DF4B71.070e-1444.83nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
UPI00109F73CA1.100e-1445.65RNA-binding protein 2 isoform X1 n=2 Tax=Dendrobiu... [more]
UPI0009E2600A1.100e-1446.74RNA-binding protein 2-like isoform X1 n=2 Tax=Phal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94998contigM-pyrifera_M_contig94998:33..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog88036.EFJ24257
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
EggNOG OGs28P7S@1,2RY61@2759,37U5W@33090,3GI1A@35493
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-28_002420.1
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.2126744-CDS-M-pyrifera_M_contig94998:32..2901622816864.2126744-CDS-M-pyrifera_M_contig94998:32..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94998 33..290 +
1692278223.311085-CDS-M-pyrifera_M_contig94998:32..2901692278223.311085-CDS-M-pyrifera_M_contig94998:32..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94998 33..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94998.21921.1prot_M-pyrifera_M_contig94998.21921.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94998 33..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94998.21921.1

>prot_M-pyrifera_M_contig94998.21921.1 ID=prot_M-pyrifera_M_contig94998.21921.1|Name=mRNA_M-pyrifera_M_contig94998.21921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFED
IGAAQGVISVIQGYQFDENVPGSTLRITFARDKPRR
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mRNA from alignment at M-pyrifera_M_contig94998:33..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94998.21921.1 ID=mRNA_M-pyrifera_M_contig94998.21921.1|Name=mRNA_M-pyrifera_M_contig94998.21921.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig94998:33..290+ (Macrocystis pyrifera P11B4 male)
ACGTCGACCTTGTTCGTTGAGGGTTTGCCGCAGGATGCGACGGAGCGAGA GGTAGCCCACATTTTCCGTCCATTTGAACGGTATCGACGCACTCGTTTGA TTCCCCCCCGGGGTCGTGCATTTCCTCTGTGTTTCGTGGAATTTGAGGAC ATTGGGGCGGCGCAAGGGGTGATTTCCGTGATCCAAGGGTACCAATTCGA CGAAAACGTGCCTGGTTCAACTCTTCGAATCACCTTCGCCAGAGATAAAC CAAGGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94998:33..290+

>mRNA_M-pyrifera_M_contig94998.21921.1 ID=mRNA_M-pyrifera_M_contig94998.21921.1|Name=mRNA_M-pyrifera_M_contig94998.21921.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig94998:33..290+ (Macrocystis pyrifera P11B4 male)
ACGTCGACCTTGTTCGTTGAGGGTTTGCCGCAGGATGCGACGGAGCGAGA
GGTAGCCCACATTTTCCGTCCATTTGAACGGTATCGACGCACTCGTTTGA
TTCCCCCCCGGGGTCGTGCATTTCCTCTGTGTTTCGTGGAATTTGAGGAC
ATTGGGGCGGCGCAAGGGGTGATTTCCGTGATCCAAGGGTACCAATTCGA
CGAAAACGTGCCTGGTTCAACTCTTCGAATCACCTTCGCCAGAGATAAAC
CAAGGAGAACGTCGACCTTGTTCGTTGAGGGTTTGCCGCAGGATGCGACG
GAGCGAGAGGTAGCCCACATTTTCCGTCCATTTGAACGGTATCGACGCAC
TCGTTTGATTCCCCCCCGGGGTCGTGCATTTCCTCTGTGTTTCGTGGAAT
TTGAGGACATTGGGGCGGCGCAAGGGGTGATTTCCGTGATCCAAGGGTAC
CAATTCGACGAAAACGTGCCTGGTTCAACTCTTCGAATCACCTTCGCCAG
AGATAAACCAAGGAGA
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