prot_M-pyrifera_M_contig94998.21921.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig94998.21921.1
Unique Name	prot_M-pyrifera_M_contig94998.21921.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	86

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A7S0D2F8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D2F8_MICPS)

HSP 1 Score: 86.3 bits (212), Expect = 6.740e-18
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 86
            +STL+VEG+P DAT RE+AH+FRPFE +R TRL+       PLCF EF+D   A      +QGY  D + P S  LR++FA+ + R+
Sbjct:  351 SSTLYVEGVPADATRREMAHVFRPFEGFRSTRLVAKENVRGPLCFAEFDDARCASKAKDTLQGYLIDRDAPESGALRVSFAKTQDRK 437

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: C1N3E4_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3E4_MICPC)

HSP 1 Score: 80.1 bits (196), Expect = 1.120e-17
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 0

Query:    3 TLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPR 85
            TL++EG+P DAT RE+AHIFRPF+ ++ TRL+       PLCF EF     A   ++ +QGY  D + P S  LRI FA+ K R
Sbjct:   18 TLYIEGVPHDATVREIAHIFRPFDGFQSTRLVKKENVRGPLCFAEFAGADLAFAALNTLQGYVLDRDDPKSPALRIVFAKSKGR 101

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0CCE1_PARTE (RRM domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CCE1_PARTE)

HSP 1 Score: 78.6 bits (192), Expect = 7.030e-17
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPP---RGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGSTLRITFARD 82
            T +L+V+G+P DA EREVAHIFRP+  ++R RLI     +GR + LCFV+F+D   A  V+  +QGY+FD+N   + L+I FA +
Sbjct:   32 THSLYVDGIPNDAQEREVAHIFRPYPGFQRVRLIKKQTQKGREYLLCFVDFDDAFQATIVMQTLQGYRFDKN-DKTGLKIYFANN 115

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A1D1Y0X0_9ARAE (Protein WHI3 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y0X0_9ARAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI--PPR---GRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 81
            +STLFVEGLP+D TEREVAHIFRPF  ++  RL+   P+   G +  LCFV+F D   A   +  ++GY+ D + P S  LR+ FAR
Sbjct:  159 SSTLFVEGLPRDCTEREVAHIFRPFVGFKEVRLVIKEPKYHSGSSLLLCFVDFIDAACAMTALIALEGYKMDAHDPDSPALRVQFAR 245

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A1U7Z8M7_NELNU (RNA-binding protein 1-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z8M7_NELNU)

HSP 1 Score: 77.0 bits (188), Expect = 2.940e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRG--RAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGST-LRITFAR 81
            ++ LFV+GLP D T REVAH+FRPF  ++  R++   P R   +A  LCFVEF+D   A   +  +QGY+FD+  P S  LRI FAR
Sbjct:  134 SNILFVDGLPNDCTRREVAHLFRPFIGFKEIRVVHKEPRRSGDKAMVLCFVEFDDAKCALTALEALQGYKFDDKKPDSPDLRIQFAR 220

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A5A8EDP5_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDP5_CAFRO)

HSP 1 Score: 78.6 bits (192), Expect = 3.660e-15
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPP---RGRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGST-LRITFARDKPR 85
            T+TL++EG+P DA+ERE+AH+FRPF+ +   RL+P     GR   LCF EF     A   + VI  Y  D    GS  LRI+FAR  PR
Sbjct:  206 TATLYIEGVPDDASERELAHLFRPFDGFEAARLVPHGGRNGRKMYLCFAEFRSPVEAFAAMQVIHNYDIDPRESGSKRLRISFARKPPR 294

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: A0A2K1KI41_PHYPA (RRM domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI41_PHYPA)

HSP 1 Score: 76.6 bits (187), Expect = 9.090e-15
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPR-----GRAFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 81
            +STLFV+GLPQD + RE AHIFRPF  ++  RL+        G    LCFVEF D   A   +  +QGY+FDE    S  LR+TFAR
Sbjct:  179 SSTLFVDGLPQDCSRREAAHIFRPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLRLTFAR 265

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI00098DF4B7 (nuclear speckle RNA-binding protein A-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DF4B7)

HSP 1 Score: 75.5 bits (184), Expect = 1.070e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGR-----AFPLCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFAR 81
            ++ LFV+GLP D T REVAH+FRPF  ++  R++    R     A+ LCFVEF D   A   +  +QGY+FD+  P +  LRI FA+
Sbjct:  131 SNILFVDGLPNDCTRREVAHLFRPFIGFKEIRVVHKEARRSGDKAYVLCFVEFNDSKCALTAMDALQGYKFDDKKPNAPVLRIQFAK 217

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI00109F73CA (RNA-binding protein 2 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F73CA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRGRAFP--LCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 86
            ++TLFVEGLP+DATERE+AHIFRPF  Y+  R++   P     +P  LCFV+F     A   ++ ++GY+ D + P S  LR+ FA+   RR
Sbjct:  160 SNTLFVEGLPRDATEREIAHIFRPFRGYKEVRVVKKEPKYDGGYPALLCFVDFTTPSFAMTAMNAVEGYKMDLHDPDSWALRLQFAKFPGRR 251

[Close]

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Match: UPI0009E2600A (RNA-binding protein 2-like isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2600A)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0

Query:    1 TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLI---PPRGRAFP--LCFVEFEDIGAAQGVISVIQGYQFDENVPGS-TLRITFARDKPRR 86
            ++TLFVEGLP+D TERE+AHIFRPF  Y+  R++   P    A P  LCFV+F     A   +S ++GY+ D + P S  LR+ FA+   RR
Sbjct:  160 SNTLFVEGLPRDTTEREIAHIFRPFRGYKEVRVVKKEPKYDGANPIILCFVDFTTPSYAMAAMSAVEGYKMDLHDPDSWALRLQFAKFPARR 251

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig94998.21921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S0D2F8_MICPS	6.740e-18	48.28	Hypothetical protein n=1 Tax=Micromonas pusilla Ta...	[more]
C1N3E4_MICPC	1.120e-17	47.62	Predicted protein (Fragment) n=1 Tax=Micromonas pu...	[more]
A0CCE1_PARTE	7.030e-17	48.24	RRM domain-containing protein n=2 Tax=Paramecium t...	[more]
A0A1D1Y0X0_9ARAE	1.040e-15	49.43	Protein WHI3 n=1 Tax=Anthurium amnicola TaxID=1678...	[more]
A0A1U7Z8M7_NELNU	2.940e-15	48.28	RNA-binding protein 1-like n=1 Tax=Nelumbo nucifer...	[more]
A0A5A8EDP5_CAFRO	3.660e-15	47.19	Uncharacterized protein n=4 Tax=Cafeteria roenberg...	[more]
A0A2K1KI41_PHYPA	9.090e-15	49.43	RRM domain-containing protein n=3 Tax=Physcomitriu...	[more]
UPI00098DF4B7	1.070e-14	44.83	nuclear speckle RNA-binding protein A-like n=1 Tax...	[more]
UPI00109F73CA	1.100e-14	45.65	RNA-binding protein 2 isoform X1 n=2 Tax=Dendrobiu...	[more]
UPI0009E2600A	1.100e-14	46.74	RNA-binding protein 2-like isoform X1 n=2 Tax=Phal...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..74 e-value: 7.5E-6 score: 35.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..69 e-value: 1.9E-12 score: 46.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..82 score: 12.953
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..86 e-value: 4.8E-18 score: 67.0
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 2..82
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig94998	contig	M-pyrifera_M_contig94998:33..290 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig94998.21921.1	mRNA_M-pyrifera_M_contig94998.21921.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig94998 33..290 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig94998.21921.1 ID=prot_M-pyrifera_M_contig94998.21921.1|Name=mRNA_M-pyrifera_M_contig94998.21921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
TSTLFVEGLPQDATEREVAHIFRPFERYRRTRLIPPRGRAFPLCFVEFED
IGAAQGVISVIQGYQFDENVPGSTLRITFARDKPRR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf