mRNA_M-pyrifera_M_contig110483.2190.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110483.2190.1
Unique NamemRNA_M-pyrifera_M_contig110483.2190.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: B0C6W9_ACAM1 (Ankyrin repeat-containing protein n=2 Tax=Acaryochloris marina TaxID=155978 RepID=B0C6W9_ACAM1)

HSP 1 Score: 55.8 bits (133), Expect = 1.570e-6
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  139 TALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLLTRLDAAGVNKLSREGCSA-LHIAFENLDLPMMVALLNAGGDLSIKSRWGRTPIVFAAQKGD 507
            T L  A+  +R E+VE LL AGA V          +++Y +     L+IA D+GN +IVKLLL      G N    +  SA LH+A       ++ AL+ A  DL+     G TP++ AA KG+
Sbjct:   31 TPLIQAINLQRVEIVETLLLAGADVH---------QSQYEITMP--LWIATDVGNLDIVKLLLNE----GANPNRGDVTSAPLHLAIAKDTPDIVEALIQAHADLNRTCALGYTPLMTAASKGN 139          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: UPI000D0C7BE3 (uncharacterized protein LOC106681361 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI000D0C7BE3)

HSP 1 Score: 55.1 bits (131), Expect = 1.140e-5
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  106 QQLNAGDHMGFTALSLAVR---YRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLLTRLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGGDLSIKSRWGRTPIVFAAQKGDE 510
            + +N  D +  +AL  AV    +   ++VE LL+ GA +              G      L +A+   N+  + LL++R   A +  L   G +A+HIA    +L    ALL  GG+++IK   GRTPI++AA +GDE
Sbjct: 1499 ETINRKDKLDSSALHYAVSMEPFMNLQIVEALLDHGADINAN-----------GFGGLTPLMLALLKKNQRALNLLISR--NASLEILDDFGTAAIHIATSINELE---ALLVHGGNVNIKGERGRTPIMYAAMRGDE 1620          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: UPI001EEB9352 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB9352)

HSP 1 Score: 54.3 bits (129), Expect = 1.990e-5
Identity = 36/118 (30.51%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  133 GFTALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGN--EEIVKLLLTRLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGGDLSIKSRWGRTP 480
            G T L LA++ R+T++V++LL+      PT    S K          +L +A  +    EEI+ LLL   D   V+ ++  G +ALH++  N ++ +   LL  G + +I  +WG++P
Sbjct:  245 GLTPLHLAIKLRKTKMVQLLLKPPMNADPTKRDASGKS---------ALLLAASIFRMKEEIIDLLLEH-DKVNVDDVNENGETALHLSAMNSNVNIFQKLLERGANPNIFDKWGQSP 352          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: UPI001EE5F7B3 (ankyrin repeat domain-containing protein 50-like n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5F7B3)

HSP 1 Score: 53.9 bits (128), Expect = 2.460e-5
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  112 LNAGDHMGFTALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLLTRLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGG-DLSIKSRWGRTPIVFAAQKG 504
            LN GD  G   + +A     TE+V  LL          D     K++ G D    +  A + G+ E+VKLLL++     V  L   G S LHIA     + M+  +L+ G  D++ + R+GRTP++ AA+KG
Sbjct:   84 LNLGDSCGNNFIHIACLGGSTEMVNYLL---------CDNTDVIKSR-GRDGRTPIMSAAENGHTEVVKLLLSK--GCDVTVLDDYGDSILHIACSGGRVDMVTFVLSLGHFDINSRGRFGRTPVMVAAEKG 203          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: E9E3J4_METAQ (Ankyrin n=1 Tax=Metarhizium acridum (strain CQMa 102) TaxID=655827 RepID=E9E3J4_METAQ)

HSP 1 Score: 53.9 bits (128), Expect = 2.700e-5
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  115 NAGDH-MGFTALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLLTRLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGGDLSIKSRWGRTPIVFAAQKG 504
            N GD+  G  +LSLA      + V+ L+  GA V+ T DP          + + +L  A  LGN+ +VK+LL     A  N++     SA+  A +  +  ++  LL  GG +++ S+ GRTP+  AAQKG
Sbjct:  812 NGGDNDYGIPSLSLAAMKGDEKAVQRLINNGADVEGT-DPN---------ECATALHYACQLGNQNVVKILL-ETGQADPNQIDPFVGSAVSWAAKEGEKELVEFLLRKGGQVTVTSKLGRTPLHQAAQKG 931          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: A0A8J6FBH9_ELECQ (SOCS box domain-containing protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FBH9_ELECQ)

HSP 1 Score: 52.8 bits (125), Expect = 5.980e-5
Identity = 46/152 (30.26%), Postives = 70/152 (46.05%), Query Frame = 1
Query:   52 QCILEYLREKAPEEVFFRQQLNAGDHMGFTALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLLT-RLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGGDLSIKSRWGRTPIVFAAQKG 504
            QC L+ L   AP   + + +   G+    +AL LA +       E+LL AGA     ++           D +  +F+A++ GNE +VKLLL  + +  G +  S  G + LH A       ++  LL  G D   K  +G TP+  AAQ G
Sbjct:   57 QC-LQLLINSAPSREYVKSKTFEGE----SALHLAAKRGSVRCAEILLRAGADPNDLTN-----------DVTTPMFLAIESGNEGVVKLLLKYKANINGPHSCS--GWNPLHQASFMECTDLLQLLLENGADKECKDDFGITPLFIAAQYG 190          
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Match: F2QQB3_KOMPC (Cyclin-dependent kinase (CDK) inhibitor n=3 Tax=Komagataella TaxID=460517 RepID=F2QQB3_KOMPC)

HSP 1 Score: 52.4 bits (124), Expect = 9.070e-5
Identity = 50/175 (28.57%), Postives = 82/175 (46.86%), Query Frame = 1
Query:    1 GRNSLHLASKRGSLAFVQCILEYLREKAPEEVFFRQQLNAGDHMGFTALSLAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLGNEEIVKLLL--TRLDAAGVNKL---SREGCSALHIAFENLDLPMMVALLNAGGDLSIKSRWGR-TPIVFAAQKGD 507
            GR  LH  ++ G+L  +Q +L+Y   K          ++A D     AL LAV  R  +++++LL  G+   PT   +              L IA  LG+EEIVK+LL  T+     +N     + EG   LHI     +  ++  LL+ G D++   +  + TP+ +A  +G+
Sbjct:  322 GRTPLHYVAEAGNLNTLQLLLQYTNIKLV--------IDALDGNSMCALLLAVINRHIDILQLLLANGSNPFPTQSEVQPVYLP--------LNIACQLGDEEIVKILLSSTKHSENQLNNFFQCNAEGLLPLHIVASLGNHNLITLLLDHGADVNQLDKLNKWTPMFYAVIQGN 480          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110483.2190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
B0C6W9_ACAM11.570e-636.29Ankyrin repeat-containing protein n=2 Tax=Acaryoch... [more]
UPI000D0C7BE31.140e-531.88uncharacterized protein LOC106681361 n=1 Tax=Halyo... [more]
UPI001EEB93521.990e-530.51serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI001EE5F7B32.460e-533.33ankyrin repeat domain-containing protein 50-like n... [more]
E9E3J4_METAQ2.700e-533.59Ankyrin n=1 Tax=Metarhizium acridum (strain CQMa 1... [more]
A0A8J6FBH9_ELECQ5.980e-530.26SOCS box domain-containing protein n=1 Tax=Eleuthe... [more]
F2QQB3_KOMPC9.070e-528.57Cyclin-dependent kinase (CDK) inhibitor n=3 Tax=Ko... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110483contigM-pyrifera_M_contig110483:57..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.7982607-CDS-M-pyrifera_M_contig110483:56..5661622815615.7982607-CDS-M-pyrifera_M_contig110483:56..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110483 57..566 -
1692277488.7885094-CDS-M-pyrifera_M_contig110483:56..5661692277488.7885094-CDS-M-pyrifera_M_contig110483:56..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110483 57..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110483.2190.1prot_M-pyrifera_M_contig110483.2190.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110483 57..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110483.2190.1

>prot_M-pyrifera_M_contig110483.2190.1 ID=prot_M-pyrifera_M_contig110483.2190.1|Name=mRNA_M-pyrifera_M_contig110483.2190.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
GRNSLHLASKRGSLAFVQCILEYLREKAPEEVFFRQQLNAGDHMGFTALS
LAVRYRRTEVVEVLLEAGAAVQPTSDPLSHKKTKYGVDFSDSLFIAVDLG
NEEIVKLLLTRLDAAGVNKLSREGCSALHIAFENLDLPMMVALLNAGGDL
SIKSRWGRTPIVFAAQKGDE
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mRNA from alignment at M-pyrifera_M_contig110483:57..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110483.2190.1 ID=mRNA_M-pyrifera_M_contig110483.2190.1|Name=mRNA_M-pyrifera_M_contig110483.2190.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig110483:57..566- (Macrocystis pyrifera P11B4 male)
GGACGCAATTCCCTCCACTTAGCGAGCAAGAGGGGGAGCCTCGCGTTCGT CCAGTGCATTCTGGAGTATCTCCGCGAAAAGGCGCCCGAGGAGGTGTTCT TTAGACAGCAGTTGAACGCTGGCGACCACATGGGCTTCACTGCTCTCTCG CTCGCTGTGCGGTACCGCCGCACCGAAGTGGTGGAGGTGCTCCTCGAGGC AGGCGCAGCCGTCCAGCCCACCAGTGATCCTCTCTCCCACAAGAAAACAA AGTACGGAGTGGACTTCAGCGACTCTCTTTTCATTGCTGTGGACCTGGGA AACGAAGAGATTGTCAAACTCCTCCTTACGCGGCTGGATGCTGCTGGCGT CAATAAGCTCTCCAGAGAGGGTTGCTCTGCTCTGCATATTGCCTTTGAGA ACTTGGACTTGCCCATGATGGTCGCTTTGCTCAACGCTGGCGGTGATCTC TCCATCAAGAGCAGGTGGGGTCGGACGCCGATCGTTTTCGCAGCTCAGAA GGGAGACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110483:57..566-

>mRNA_M-pyrifera_M_contig110483.2190.1 ID=mRNA_M-pyrifera_M_contig110483.2190.1|Name=mRNA_M-pyrifera_M_contig110483.2190.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig110483:57..566- (Macrocystis pyrifera P11B4 male)
GGACGCAATTCCCTCCACTTAGCGAGCAAGAGGGGGAGCCTCGCGTTCGT
CCAGTGCATTCTGGAGTATCTCCGCGAAAAGGCGCCCGAGGAGGTGTTCT
TTAGACAGCAGTTGAACGCTGGCGACCACATGGGCTTCACTGCTCTCTCG
CTCGCTGTGCGGTACCGCCGCACCGAAGTGGTGGAGGTGCTCCTCGAGGC
AGGCGCAGCCGTCCAGCCCACCAGTGATCCTCTCTCCCACAAGAAAACAA
AGTACGGAGTGGACTTCAGCGACTCTCTTTTCATTGCTGTGGACCTGGGA
AACGAAGAGATTGTCAAACTCCTCCTTACGCGGCTGGATGCTGCTGGCGT
CAATAAGCTCTCCAGAGAGGGTTGCTCTGCTCTGCATATTGCCTTTGAGA
ACTTGGACTTGCCCATGATGGTCGCTTTGCTCAACGCTGGCGGTGATCTC
TCCATCAAGAGCAGGTGGGGTCGGACGCCGATCGTTTTCGCAGCTCAGAA
GGGAGACGAAGGACGCAATTCCCTCCACTTAGCGAGCAAGAGGGGGAGCC
TCGCGTTCGTCCAGTGCATTCTGGAGTATCTCCGCGAAAAGGCGCCCGAG
GAGGTGTTCTTTAGACAGCAGTTGAACGCTGGCGACCACATGGGCTTCAC
TGCTCTCTCGCTCGCTGTGCGGTACCGCCGCACCGAAGTGGTGGAGGTGC
TCCTCGAGGCAGGCGCAGCCGTCCAGCCCACCAGTGATCCTCTCTCCCAC
AAGAAAACAAAGTACGGAGTGGACTTCAGCGACTCTCTTTTCATTGCTGT
GGACCTGGGAAACGAAGAGATTGTCAAACTCCTCCTTACGCGGCTGGATG
CTGCTGGCGTCAATAAGCTCTCCAGAGAGGGTTGCTCTGCTCTGCATATT
GCCTTTGAGAACTTGGACTTGCCCATGATGGTCGCTTTGCTCAACGCTGG
CGGTGATCTCTCCATCAAGAGCAGGTGGGGTCGGACGCCGATCGTTTTCG
CAGCTCAGAAGGGAGACGAA
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