mRNA_M-pyrifera_M_contig110457.2186.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110457.2186.1
Unique NamemRNA_M-pyrifera_M_contig110457.2186.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110457.2186.1 vs. uniprot
Match: D8LRQ7_ECTSI (DnaJ Cysteine-Rich Domain-Containing Protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.340e-27
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 ERLKSRRNCPYCDGSGKLICAICCSAGTFATKLPGAETFSTLPCTGCSGTGYINCLNC 174
            E+LK+RRNCPYCDGSGKL+CA+C SAGTF  KLPG++T+STLPC GC+G  YI CLNC
Sbjct:  143 EKLKTRRNCPYCDGSGKLVCAVCFSAGTFTVKLPGSDTYSTLPCPGCAGNKYITCLNC 200
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BLAST of mRNA_M-pyrifera_M_contig110457.2186.1 vs. uniprot
Match: A0A2V3J075_9FLOR (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J075_9FLOR)

HSP 1 Score: 48.1 bits (113), Expect = 4.090e-5
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 1 
Query:    1 ERLKSRRNCPYCDGSGKLICAICCSAGTFA--TKLPGAETFSTLPCTGCSGTGYINCLNC 174
            +R+K R+ CPYC G+GKL CA C + G     T L   E      CT C+  G++ C +C
Sbjct:   92 QRVKHRKQCPYCRGTGKLPCASCYTIGAVPSRTALTAQEV-----CTCCNERGFLQCNHC 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110457.2186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRQ7_ECTSI9.340e-2774.14DnaJ Cysteine-Rich Domain-Containing Protein n=2 T... [more]
A0A2V3J075_9FLOR4.090e-540.00Protein ORANGE-LIKE, chloroplastic n=1 Tax=Gracila... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110457contigM-pyrifera_M_contig110457:56..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDnaJ Cysteine-Rich Domain-Containing Protein
Ec32 orthologEc-08_002050.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6279933-CDS-M-pyrifera_M_contig110457:55..2291622815615.6279933-CDS-M-pyrifera_M_contig110457:55..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110457 56..229 +
1692277488.7304943-CDS-M-pyrifera_M_contig110457:55..2291692277488.7304943-CDS-M-pyrifera_M_contig110457:55..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110457 56..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110457.2186.1prot_M-pyrifera_M_contig110457.2186.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110457 56..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110457.2186.1

>prot_M-pyrifera_M_contig110457.2186.1 ID=prot_M-pyrifera_M_contig110457.2186.1|Name=mRNA_M-pyrifera_M_contig110457.2186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
ERLKSRRNCPYCDGSGKLICAICCSAGTFATKLPGAETFSTLPCTGCSGT
GYINCLNC
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mRNA from alignment at M-pyrifera_M_contig110457:56..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110457.2186.1 ID=mRNA_M-pyrifera_M_contig110457.2186.1|Name=mRNA_M-pyrifera_M_contig110457.2186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig110457:56..229+ (Macrocystis pyrifera P11B4 male)
GAGAGGCTCAAGTCCCGACGTAACTGTCCGTACTGCGACGGAAGCGGCAA
GCTGATATGCGCAATATGCTGCTCGGCGGGAACATTTGCCACCAAGCTGC
CCGGAGCCGAAACGTTCAGCACGTTGCCATGCACCGGCTGCTCGGGGACA
GGGTACATCAACTGCTTGAACTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110457:56..229+

>mRNA_M-pyrifera_M_contig110457.2186.1 ID=mRNA_M-pyrifera_M_contig110457.2186.1|Name=mRNA_M-pyrifera_M_contig110457.2186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig110457:56..229+ (Macrocystis pyrifera P11B4 male)
GAGAGGCTCAAGTCCCGACGTAACTGTCCGTACTGCGACGGAAGCGGCAA
GCTGATATGCGCAATATGCTGCTCGGCGGGAACATTTGCCACCAAGCTGC
CCGGAGCCGAAACGTTCAGCACGTTGCCATGCACCGGCTGCTCGGGGACA
GGGTACATCAACTGCTTGAACTGCGAGAGGCTCAAGTCCCGACGTAACTG
TCCGTACTGCGACGGAAGCGGCAAGCTGATATGCGCAATATGCTGCTCGG
CGGGAACATTTGCCACCAAGCTGCCCGGAGCCGAAACGTTCAGCACGTTG
CCATGCACCGGCTGCTCGGGGACAGGGTACATCAACTGCTTGAACTGC
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