mRNA_M-pyrifera_M_contig110410.2182.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110410.2182.1
Unique NamemRNA_M-pyrifera_M_contig110410.2182.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A814R3L4_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A814R3L4_9BILA)

HSP 1 Score: 111 bits (278), Expect = 2.680e-25
Identity = 59/166 (35.54%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   34 GANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMYDFLEDLYCSTVSAS 513
            G  P+H+ FL  T  E  L + +++   +P+++ Q Y++ EY GE  LHIA++NR+  ++ ++LS       R   L+  A+G FF +       G  CYYGET L FA CTNQ  +V++L++ + A++  +D   NT+LHL V+HNLP++Y   ++ +   ++ S
Sbjct:   64 GDCPIHMLFLYGT--EAHLKMARYLIKRFPEIVIQIYNQPEYYGEIVLHIAIINRNAIIIEWLLSNERVRLYREQQLTSTASGHFFQY-------GRPCYYGETPLAFACCTNQWNIVEILLK-YGASMDVVDNNGNTILHLVVIHNLPKIYTKFKERWLKVLAMS 219          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A815TIP9_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TIP9_ADIRI)

HSP 1 Score: 109 bits (272), Expect = 5.480e-25
Identity = 60/170 (35.29%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    1 PLSLHDALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMYDFLEDLY 492
            P S+++  P+ G  P+H+ FL  T  E  + + +++    P+ + Q Y + EY GE  LHIA++ R+ A+V ++LS       R   L+  A G+FF +       G  CYYGET L FA CTNQ  + ++L+R H A++  +D   NT+ HL V+HN P++Y   ++ +
Sbjct:   75 PNSVNERGPV-GDCPIHMLFLYGT--ENHINMAQYLVRRCPETVIQAYDQSEYRGEVVLHIAIIKRNAAMVEWLLSNEHSKFYREQQLAATANGSFFQF-------GRPCYYGETPLAFACCTNQWDIAEILLR-HGASMDTVDSNGNTIFHLVVIHNKPKIYSKFKECW 233          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A815DRD4_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A815DRD4_9BILA)

HSP 1 Score: 110 bits (274), Expect = 9.210e-25
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   34 GANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMY 471
            G  P+H+ FL  T  E  L + +++   +P+++ Q Y++ EY GE  LHIA++NR+  ++ ++LS       R   L+  A+G FF +       G  CYYGET L FA CTNQ  +V++L++ + A++  +D   NT+LHL V+HNLP++Y
Sbjct:   64 GDCPIHMLFLYGT--EAHLKMARYLIKRFPEIVIQIYNQPEYYGEIVLHIAIINRNAIIIEWLLSNERVRLYREQQLTATASGHFFQY-------GRPCYYGETPLAFACCTNQWNIVEILLK-YGASMDVVDNNGNTILHLVVIHNLPKIY 205          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A814ASZ2_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814ASZ2_9BILA)

HSP 1 Score: 109 bits (273), Expect = 1.110e-24
Identity = 60/152 (39.47%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   34 GANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMY 471
            G  P+H+ FL  T  E  L   +++   +P+ + Q Y++ EY GE  LHIA+VNR+ ++V ++LS       R   L+  A G FF +       G  CYYGET L FA CTNQ  + ++L++ + A++  +D  +NT+LHL V+HNLPQ+Y
Sbjct:   64 GDCPIHMLFLYGT--EAHLNTARYLITRFPETVIQIYNQSEYYGEIALHIAIVNRNASIVEWLLSDEHIRPYREQQLTATANGHFFQF-------GRPCYYGETPLAFACCTNQWNIAEILLK-YGASMDMVDSNENTILHLLVIHNLPQIY 205          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A815VRA7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815VRA7_ADIRI)

HSP 1 Score: 109 bits (272), Expect = 1.470e-24
Identity = 60/170 (35.29%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    1 PLSLHDALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMYDFLEDLY 492
            P S+++  P+ G  P+H+ FL  T  E  + + +++    P+ + Q Y + EY GE  LHIA++ R+ A+V ++LS       R   L+  A G+FF +       G  CYYGET L FA CTNQ  + ++L+R H A++  +D   NT+ HL V+HN P++Y   ++ +
Sbjct:   54 PNSVNERGPV-GDCPIHMLFLYGT--ENHINMAQYLVRRCPETVIQAYDQSEYRGEVVLHIAIIKRNAAMVEWLLSNEHSKFYREQQLAATANGSFFQF-------GRPCYYGETPLAFACCTNQWDIAEILLR-HGASMDTVDSNGNTIFHLVVIHNKPKIYSKFKECW 212          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A815U5I9_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815U5I9_9BILA)

HSP 1 Score: 106 bits (265), Expect = 1.480e-24
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   34 GANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMY 471
            G  P+H+ FL  T     L + +++   +P+ + Q Y++ EY GE  LHIA+VNR+ ++V ++LS       R   L+  A G FF +       G  CYYGET L FA CTNQ  + ++L++ + A++  +D   NT+LHL V+HNLPQ+Y
Sbjct:   64 GDCPIHMLFLYGT--GAHLNMARYLITRFPETVVQIYNQPEYYGEIALHIAIVNRNASIVEWLLSDEHIRPYREQQLAAAANGHFFQF-------GRPCYYGETPLAFACCTNQWNIAEILLK-YGASMDMVDSNGNTILHLLVIHNLPQIY 205          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A813QFE5_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QFE5_ADIRI)

HSP 1 Score: 108 bits (269), Expect = 3.950e-24
Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   16 DALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSRRPSLLSER------ATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMY 471
            DA    G  P+H+CFL  +  +  L++ +++  ++P  + Q Y++DEY GE  LHIA++ R+ A+V ++L   P+   +R      A+G FF       + G  CYYGET L FA CTNQ  + ++L++ + A++   D   N +LHL V+H LP+MY
Sbjct:   78 DARGPVGDCPIHMCFLYGS--DTHLSMARYLITKFPHTITQVYNEDEYYGENALHIAIIKRNAAMVEWLLGDEPNQRYQRKQLTACASGNFF-------KVGRPCYYGETPLAFACCTNQWNIAEILLK-YGADMDVTDSNGNNILHLLVIHKLPKMY 225          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A819YWC5_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A819YWC5_9BILA)

HSP 1 Score: 107 bits (268), Expect = 5.320e-24
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   16 DALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSRRPSL------LSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMYDFLEDLYCSTVSASR 516
            DA    G  P+H+ FL  T  E  L + ++    +P  + Q Y+K+EY GE  LHIA++ R+P +V ++L    +       L+  A+G FF       + G  CYYGET L FA CTNQ  +V++L++   A++  +D   NTVLHL V+ NLP+MY   ++ + +   A +
Sbjct:   77 DARGPVGECPIHMLFLYGT--ETHLNMARYFIINFPHTITQIYNKEEYYGEMVLHIAIIKRNPTMVEWLLGEEHNRAYLEQQLTSTASGRFF-------QEGRPCYYGETPLAFACCTNQWNIVEILLK-FGASMDVVDSNGNTVLHLLVIRNLPEMYTKYKERWIAEQQADK 239          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A819R5R1_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A819R5R1_9BILA)

HSP 1 Score: 107 bits (268), Expect = 5.540e-24
Identity = 60/152 (39.47%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   34 GANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMY 471
            G  P+H+ FL  T     L + +++   +P+ + Q Y++ EY GE  LHIA+VNR+ ++V+++LS       R   L+  A G FF +       G  CYYGET L FA CTNQ  + ++L++ + A++  +D   NT+LHL VVHNLPQ+Y
Sbjct:   64 GDCPIHMLFLYGT--GAHLNMARYLITRFPETVVQIYNQPEYYGEIALHIAIVNRNASIVKWLLSDEHIRPYREQQLAAAANGHFFQF-------GRPCYYGETPLAFACCTNQWNIAEILLK-YGASMDMVDSNGNTILHLLVVHNLPQIY 205          
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Match: A0A815TIW8_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TIW8_ADIRI)

HSP 1 Score: 107 bits (266), Expect = 1.020e-23
Identity = 60/170 (35.29%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    1 PLSLHDALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSKDEYAGETCLHIAVVNRDPALVRFILSR------RPSLLSERATGTFFSWERWVEEGGGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVVHNLPQMYDFLEDLY 492
            P S+++  P+ G  P+H+ FL  T  E  L++ +++   +P+   Q Y++ EY GE  LHIA++ R+  +V ++LS       R   L+  A G FF +       G  CYYGET L FA CTNQ  + ++L++ + A +  +D   NT+LHL V+HNLP++Y   ++ +
Sbjct:  142 PNSVNERGPV-GDCPIHMLFLYGT--ETHLSMAQYLIKRFPETATQIYNQPEYYGEIALHIAIIKRNAVMVEWLLSNKYTRPYREQQLAATANGNFFQF-------GRPCYYGETPLAFACCTNQWNIAEILLK-YGAAMDTVDSNGNTILHLVVIHNLPKIYSKFKECW 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110410.2182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A814R3L4_9BILA2.680e-2535.54Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A815TIP9_ADIRI5.480e-2535.29Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A815DRD4_9BILA9.210e-2538.16Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A814ASZ2_9BILA1.110e-2439.47Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A815VRA7_ADIRI1.470e-2435.29Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A815U5I9_9BILA1.480e-2438.82Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A813QFE5_ADIRI3.950e-2436.71Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A819YWC5_9BILA5.320e-2435.84Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
A0A819R5R1_9BILA5.540e-2439.47Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A815TIW8_ADIRI1.020e-2335.29Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110410contigM-pyrifera_M_contig110410:77..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog70448.A0A090M636
KEGG koko:K04975
KEGG TC1.A.4.2.11,1.A.4.2.12,1.A.4.2.6,1.A.4.2.7
KEGG Pathwayko04970,ko04978,map04970,map04978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.327601-CDS-M-pyrifera_M_contig110410:76..5951622815615.327601-CDS-M-pyrifera_M_contig110410:76..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110410 77..595 -
1692277488.5497835-CDS-M-pyrifera_M_contig110410:76..5951692277488.5497835-CDS-M-pyrifera_M_contig110410:76..595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110410 77..595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110410.2182.1prot_M-pyrifera_M_contig110410.2182.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110410 77..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110410.2182.1

>prot_M-pyrifera_M_contig110410.2182.1 ID=prot_M-pyrifera_M_contig110410.2182.1|Name=mRNA_M-pyrifera_M_contig110410.2182.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
PLSLHDALPISGANPLHLCFLLSTMWEESLTIGKWMADEYPQLLAQGYSK
DEYAGETCLHIAVVNRDPALVRFILSRRPSLLSERATGTFFSWERWVEEG
GGTCYYGETALHFAVCTNQRAMVDMLVREHKANLAEIDRRKNTVLHLAVV
HNLPQMYDFLEDLYCSTVSASRH
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mRNA from alignment at M-pyrifera_M_contig110410:77..595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110410.2182.1 ID=mRNA_M-pyrifera_M_contig110410.2182.1|Name=mRNA_M-pyrifera_M_contig110410.2182.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig110410:77..595- (Macrocystis pyrifera P11B4 male)
CCTCTTTCCCTACACGACGCTCTTCCGATCTCCGGTGCAAACCCACTACA TTTATGCTTCTTGTTGTCAACAATGTGGGAGGAGAGTTTGACAATTGGAA AATGGATGGCAGATGAGTATCCGCAACTGTTAGCGCAAGGGTACAGCAAA GACGAGTATGCCGGAGAGACATGTCTGCATATTGCAGTGGTAAACCGTGA CCCTGCTTTAGTGCGCTTTATTCTGTCGCGGAGGCCTTCTCTTCTTTCAG AACGAGCCACAGGGACGTTTTTTTCTTGGGAAAGGTGGGTGGAAGAAGGA GGTGGCACGTGCTACTATGGGGAAACAGCACTCCATTTCGCAGTCTGTAC CAACCAGCGCGCCATGGTAGACATGCTTGTGCGGGAGCACAAGGCCAACC TAGCCGAAATCGACCGAAGAAAGAACACAGTGCTGCATCTCGCAGTTGTT CACAATCTCCCACAGATGTACGACTTTCTAGAAGACTTGTACTGCTCCAC AGTGTCTGCATCAAGACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110410:77..595-

>mRNA_M-pyrifera_M_contig110410.2182.1 ID=mRNA_M-pyrifera_M_contig110410.2182.1|Name=mRNA_M-pyrifera_M_contig110410.2182.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig110410:77..595- (Macrocystis pyrifera P11B4 male)
CCTCTTTCCCTACACGACGCTCTTCCGATCTCCGGTGCAAACCCACTACA
TTTATGCTTCTTGTTGTCAACAATGTGGGAGGAGAGTTTGACAATTGGAA
AATGGATGGCAGATGAGTATCCGCAACTGTTAGCGCAAGGGTACAGCAAA
GACGAGTATGCCGGAGAGACATGTCTGCATATTGCAGTGGTAAACCGTGA
CCCTGCTTTAGTGCGCTTTATTCTGTCGCGGAGGCCTTCTCTTCTTTCAG
AACGAGCCACAGGGACGTTTTTTTCTTGGGAAAGGTGGGTGGAAGAAGGA
GGTGGCACGTGCTACTATGGGGAAACAGCACTCCATTTCGCAGTCTGTAC
CAACCAGCGCGCCATGGTAGACATGCTTGTGCGGGAGCACAAGGCCAACC
TAGCCGAAATCGACCGAAGAAAGAACACAGTGCTGCATCTCGCAGTTGTT
CACAATCTCCCACAGATGTACGACTTTCTAGAAGACTTGTACTGCTCCAC
AGTGTCTGCATCAAGACATCCTCTTTCCCTACACGACGCTCTTCCGATCT
CCGGTGCAAACCCACTACATTTATGCTTCTTGTTGTCAACAATGTGGGAG
GAGAGTTTGACAATTGGAAAATGGATGGCAGATGAGTATCCGCAACTGTT
AGCGCAAGGGTACAGCAAAGACGAGTATGCCGGAGAGACATGTCTGCATA
TTGCAGTGGTAAACCGTGACCCTGCTTTAGTGCGCTTTATTCTGTCGCGG
AGGCCTTCTCTTCTTTCAGAACGAGCCACAGGGACGTTTTTTTCTTGGGA
AAGGTGGGTGGAAGAAGGAGGTGGCACGTGCTACTATGGGGAAACAGCAC
TCCATTTCGCAGTCTGTACCAACCAGCGCGCCATGGTAGACATGCTTGTG
CGGGAGCACAAGGCCAACCTAGCCGAAATCGACCGAAGAAAGAACACAGT
GCTGCATCTCGCAGTTGTTCACAATCTCCCACAGATGTACGACTTTCTAG
AAGACTTGTACTGCTCCACAGTGTCTGCATCAAGACAT
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