mRNA_M-pyrifera_M_contig94287.21768.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94287.21768.1
Unique NamemRNA_M-pyrifera_M_contig94287.21768.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A812Y9A2_9DINO (TalB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Y9A2_9DINO)

HSP 1 Score: 100 bits (248), Expect = 1.100e-22
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 KLVWQIMLFAESIVNSKDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVRLTKMKPRNWEQMIF 294
            K V+Q  LF E++V+S DP +I ++++Q  YNII+G YPC+  +AV LAALQ+ +KFG H+  VHK GYLT TL+EY+PAP          ++E  ++
Sbjct:   91 KFVFQCKLFTETLVDSGDPAIIRLLFIQGVYNIITGTYPCNYSDAVQLAALQLQSKFGEHKPAVHKMGYLTNTLHEYVPAPWTDADSFDKADFEAQVY 188          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A812QKB1_9DINO (TLN1 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812QKB1_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-19
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 KLVWQIMLFAESIVNSKDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHV 249
            KLV QI LF E +++SKD ++ +M+Y+Q  YN+ISG YP D+++A+ LA+LQ + KFG  + E HKPG+L + L E+IP  H+
Sbjct:   37 KLVCQIHLFTEGLMDSKDERIREMLYMQTVYNVISGMYPTDKEDALKLASLQFVHKFGELKPETHKPGFLGSKLREFIPIAHI 119          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A9UXG5_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXG5_MONBE)

HSP 1 Score: 60.1 bits (144), Expect = 2.290e-8
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   52 DPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVRLTKMKPRNWEQMIF 294
            DP V+ +++ Q  ++ +S ++P    ++ HLA L +  +F  H+ E H  G+LT TL  ++PA H++   ++P  WE+ IF
Sbjct:  446 DPVVLKLLFEQALHSYLSSEWPVSLDDSAHLAGLLMQIRFADHKGESHTLGFLTGTLQTFVPA-HLQHA-LRPAEWERRIF 524          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: UPI000C76B917 (FERM domain-containing protein 8-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76B917)

HSP 1 Score: 57.8 bits (138), Expect = 1.410e-7
Identity = 20/68 (29.41%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   49 KDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVR 252
            KD K++++++ +  YNI++G+YPC+  + + L  +Q   + GP+    H P ++   L  ++P   VR
Sbjct:  244 KDQKILELLFEEAKYNILTGRYPCEVSDYIMLGGIQARLELGPYDISTHTPSFIRQNLERFLPEHAVR 311          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A6J2YPG7_SITOR (putative FERM domain-containing protein FRMD8P1 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YPG7_SITOR)

HSP 1 Score: 56.6 bits (135), Expect = 3.600e-7
Identity = 22/68 (32.35%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   49 KDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVR 252
            KD K+++++Y +C YNI++G+YP +    + L  +Q   + GP+  +VH   +     ++++PA HVR
Sbjct:  269 KDQKILELLYEECKYNILNGRYPSEIPHLIMLGGIQAREELGPYNPQVHNTHFFREEQSKFLPA-HVR 335          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: UPI00094EB040 (FERM domain-containing protein 8 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094EB040)

HSP 1 Score: 55.8 bits (133), Expect = 6.740e-7
Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 KLVWQIMLFAESIVNS--KDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVR 252
            KLV+Q  +F    +    KD K+++++Y +C YN+++G+YP +    + L  +Q   + GP+  +VH   +     ++++PA HVR
Sbjct:  269 KLVFQRNIFVAKQLEERIKDQKILELLYEECKYNVLNGRYPSEIAYLIMLGGIQAREELGPYNVQVHTTHFFREQQSKFLPA-HVR 353          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: U4UZF7_DENPD (FERM domain-containing protein n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4UZF7_DENPD)

HSP 1 Score: 55.5 bits (132), Expect = 8.970e-7
Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 KLVWQIMLFAESIVNS--KDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPAPHVR 252
            KLV+Q  +F    +    KD K+++++Y +C YN+++G+YP +    + L  +Q   + GP+  +VH   +     ++++PA HVR
Sbjct:  140 KLVFQRNIFVTKQLEERIKDQKILELLYEECKYNVLNGRYPSEIAYLIMLGGIQAREELGPYNLQVHTTHFFREQQSKFLPA-HVR 224          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A553ND89_TIGCA (FERM domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553ND89_TIGCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.290e-6
Identity = 19/66 (28.79%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   40 VNSKDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIP 237
            V  +D KV++++Y +  YNI++G+YPC+  + + L  +Q   + GP+ +E H   +  + +  ++P
Sbjct:  533 VKLRDNKVLELLYEEAKYNILTGRYPCEISDYIMLGGIQARLELGPYESETHTSSFFRSIMYRFLP 598          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A0K2TXU0_LEPSM (FERM domain-containing protein n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TXU0_LEPSM)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-6
Identity = 19/66 (28.79%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   40 VNSKDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIP 237
            V  +D K+++++Y +  YNI++G+YPC+  + V L  +Q   + G +  ++H P Y  + +  ++P
Sbjct:  362 VKIRDHKILELLYEEAKYNILTGQYPCELSDYVMLGGIQARLELGTYDQDIHTPSYFRSIMYRFLP 427          
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Match: A0A670ZST7_PSETE (FERM domain containing 8 n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670ZST7_PSETE)

HSP 1 Score: 49.7 bits (117), Expect = 9.620e-5
Identity = 20/64 (31.25%), Postives = 36/64 (56.25%), Query Frame = 1
Query:   49 KDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAKFGPHRAEVHKPGYLTATLNEYIPA 240
            +D  V+ ++Y +  YNI+ G+YPCD+ +   L AL      GP+  + H   +L   L+ ++P+
Sbjct:  136 QDEDVLRLLYEEAKYNILEGRYPCDQADCDALGALVCRINLGPYNPQQHTASFLKEKLDCFLPS 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94287.21768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A812Y9A2_9DINO1.100e-2246.94TalB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A812QKB1_9DINO1.400e-1949.40TLN1 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A9UXG5_MONBE2.290e-833.33Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
UPI000C76B9171.410e-729.41FERM domain-containing protein 8-like n=1 Tax=Eury... [more]
A0A6J2YPG7_SITOR3.600e-732.35putative FERM domain-containing protein FRMD8P1 n=... [more]
UPI00094EB0406.740e-730.23FERM domain-containing protein 8 n=1 Tax=Dendrocto... [more]
U4UZF7_DENPD8.970e-730.23FERM domain-containing protein n=2 Tax=Dendroctonu... [more]
A0A553ND89_TIGCA1.290e-628.79FERM domain-containing protein n=1 Tax=Tigriopus c... [more]
A0A0K2TXU0_LEPSM1.730e-628.79FERM domain-containing protein n=2 Tax=Lepeophthei... [more]
A0A670ZST7_PSETE9.620e-531.25FERM domain containing 8 n=1 Tax=Pseudonaja textil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94287contigM-pyrifera_M_contig94287:293..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.1
Seed ortholog evalue2e-08
Seed eggNOG ortholog7260.FBpp0242479
KEGG koko:K06271
KEGG Pathwayko04015,ko04510,ko04611,ko05166,map04015,map04510,map04611,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001700,GO:0001894,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002164,GO:0002165,GO:0003006,GO:0003674,GO:0003779,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005912,GO:0005924,GO:0005925,GO:0006355,GO:0006928,GO:0006996,GO:0007010,GO:0007016,GO:0007155,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007390,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007517,GO:0007525,GO:0007526,GO:0007552,GO:0007560,GO:0008092,GO:0008104,GO:0008150,GO:0008587,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010631,GO:0010669,GO:0010927,GO:0016043,GO:0016203,GO:0016477,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022610,GO:0030029,GO:0030036,GO:0030054,GO:0030055,GO:0030154,GO:0030239,GO:0030707,GO:0030855,GO:0031032,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032989,GO:0033036,GO:0033627,GO:0034109,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035152,GO:0035160,GO:0035220,GO:0035239,GO:0035295,GO:0040011,GO:0042592,GO:0042692,GO:0044085,GO:0044703,GO:0044877,GO:0045185,GO:0045214,GO:0045892,GO:0045934,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048598,GO:0048609,GO:0048646,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050839,GO:0051146,GO:0051171,GO:0051172,GO:0051179,GO:0051235,GO:0051252,GO:0051253,GO:0051641,GO:0051651,GO:0051674,GO:0051704,GO:0055001,GO:0055002,GO:0060249,GO:0060255,GO:0060429,GO:0060538,GO:0060541,GO:0060562,GO:0061061,GO:0065007,GO:0065008,GO:0070161,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0086042,GO:0090130,GO:0090132,GO:0097435,GO:0098609,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.It is involved in the biological process described with cytoskeletal anchoring at plasma membrane
EggNOG OGs38HIJ@33154,3BAVX@33208,3CRH2@33213,3SHTT@50557,41UV5@6656,44WQD@7147,45NJ3@7214,KOG4261@1,KOG4261@2759
COG Functional cat.Z
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147
Exons1
Model size300
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.6884508-UTR-M-pyrifera_M_contig94287:292..3101622816856.6884508-UTR-M-pyrifera_M_contig94287:292..310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94287 293..310 +
1692278219.0217216-UTR-M-pyrifera_M_contig94287:292..3101692278219.0217216-UTR-M-pyrifera_M_contig94287:292..310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94287 293..310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.7000537-CDS-M-pyrifera_M_contig94287:310..5921622816856.7000537-CDS-M-pyrifera_M_contig94287:310..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94287 311..592 +
1692278219.0345874-CDS-M-pyrifera_M_contig94287:310..5921692278219.0345874-CDS-M-pyrifera_M_contig94287:310..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94287 311..592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94287.21768.1prot_M-pyrifera_M_contig94287.21768.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94287 311..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94287.21768.1

>prot_M-pyrifera_M_contig94287.21768.1 ID=prot_M-pyrifera_M_contig94287.21768.1|Name=mRNA_M-pyrifera_M_contig94287.21768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MLFAESIVNSKDPKVIDMMYLQCTYNIISGKYPCDEKEAVHLAALQVLAK
FGPHRAEVHKPGYLTATLNEYIPAPHVRLTKMKPRNWEQMIFAA
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mRNA from alignment at M-pyrifera_M_contig94287:293..592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94287.21768.1 ID=mRNA_M-pyrifera_M_contig94287.21768.1|Name=mRNA_M-pyrifera_M_contig94287.21768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig94287:293..592+ (Macrocystis pyrifera P11B4 male)
AAGTTGGTCTGGCAAATCATGCTTTTTGCTGAATCCATTGTGAATTCCAA GGACCCAAAGGTTATTGATATGATGTACTTGCAATGTACGTATAATATCA TCTCTGGAAAGTACCCTTGTGATGAAAAAGAAGCGGTACACCTCGCAGCC CTGCAAGTCTTGGCAAAGTTTGGGCCTCATCGAGCAGAAGTTCACAAACC AGGCTACCTGACAGCCACACTGAATGAGTACATTCCAGCTCCTCATGTGA GGCTCACCAAAATGAAACCCAGGAACTGGGAGCAGATGATCTTTGCAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94287:293..592+

>mRNA_M-pyrifera_M_contig94287.21768.1 ID=mRNA_M-pyrifera_M_contig94287.21768.1|Name=mRNA_M-pyrifera_M_contig94287.21768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig94287:293..592+ (Macrocystis pyrifera P11B4 male)
ATGCTTTTTGCTGAATCCATTGTGAATTCCAAGGACCCAAAGGTTATTGA
TATGATGTACTTGCAATGTACGTATAATATCATCTCTGGAAAGTACCCTT
GTGATGAAAAAGAAGCGGTACACCTCGCAGCCCTGCAAGTCTTGGCAAAG
TTTGGGCCTCATCGAGCAGAAGTTCACAAACCAGGCTACCTGACAGCCAC
ACTGAATGAGTACATTCCAGCTCCTCATGTGAGGCTCACCAAAATGAAAC
CCAGGAACTGGGAGCAGATGATCTTTGCAGCAATGCTTTTTGCTGAATCC
ATTGTGAATTCCAAGGACCCAAAGGTTATTGATATGATGTACTTGCAATG
TACGTATAATATCATCTCTGGAAAGTACCCTTGTGATGAAAAAGAAGCGG
TACACCTCGCAGCCCTGCAAGTCTTGGCAAAGTTTGGGCCTCATCGAGCA
GAAGTTCACAAACCAGGCTACCTGACAGCCACACTGAATGAGTACATTCC
AGCTCCTCATGTGAGGCTCACCAAAATGAAACCCAGGAACTGGGAGCAGA
TGATCTTTGCAGCA
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