mRNA_M-pyrifera_M_contig110338.2161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110338.2161.1
Unique NamemRNA_M-pyrifera_M_contig110338.2161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: V9IGK5_APICE (Pleiotropic regulator 1 n=1 Tax=Apis cerana TaxID=7461 RepID=V9IGK5_APICE)

HSP 1 Score: 103 bits (257), Expect = 2.180e-24
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTL 165
            P+WHAPWKL RVISGH G VRCCAVEP NEWFATGSADR I +WDLASG  KV+L
Sbjct:   12 PKWHAPWKLYRVISGHLGWVRCCAVEPGNEWFATGSADRVIKIWDLASGKLKVSL 66
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A4Q0A102_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A102_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 5.520e-24
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTL 165
            PEWHAPWKLMRVISGH G VRC AVEP N+WFATGS+DRTI +WDLASGT K+TL
Sbjct:   24 PEWHAPWKLMRVISGHLGWVRCIAVEPGNKWFATGSSDRTIKIWDLASGTLKLTL 78
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: R1DD85_EMIHU (ATP-grasp domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DD85_EMIHU)

HSP 1 Score: 107 bits (267), Expect = 7.470e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLT 168
            PEWHAPWKLMRVISGH G VRC AV+P+N+W+ATGSADRTI VWDLASGT K+TLT
Sbjct:  522 PEWHAPWKLMRVISGHLGWVRCVAVDPTNQWYATGSADRTIKVWDLASGTLKLTLT 577
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A7S3T2P6_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T2P6_EMIHU)

HSP 1 Score: 105 bits (262), Expect = 8.830e-24
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTL 165
            PEWHAPWKLMRVISGH G VRC AV+P+N+W+ATGSADRTI VWDLASGT K+TL
Sbjct:   60 PEWHAPWKLMRVISGHLGWVRCVAVDPTNQWYATGSADRTIKVWDLASGTLKLTL 114
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A7S4BPM7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPM7_CHRCT)

HSP 1 Score: 105 bits (261), Expect = 9.080e-24
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTL 165
            PEWHAPWK+MRVISGH G VRC AV+P+NEWF TGSADRTI +WDLASGT K+TL
Sbjct:   36 PEWHAPWKMMRVISGHLGWVRCVAVDPTNEWFVTGSADRTIKIWDLASGTLKLTL 90
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: UPI0006C9CBA2 (pleiotropic regulator 1 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9CBA2)

HSP 1 Score: 105 bits (263), Expect = 1.280e-23
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLT 168
            P+WHAPWKL RVISGH G VRCCA+EPSNEWFATGSADR I +WDLASG  K++LT
Sbjct:  132 PKWHAPWKLYRVISGHLGWVRCCAIEPSNEWFATGSADRVIKIWDLASGHLKISLT 187
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A7S1DPI7_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPI7_HEMAN)

HSP 1 Score: 104 bits (259), Expect = 1.370e-23
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTL 165
            PEWHAPWKLMRVI+GH G VRCCAV+P+NEWFATG+ DRTI +WDLASG  K+TL
Sbjct:   16 PEWHAPWKLMRVIAGHLGWVRCCAVDPTNEWFATGAGDRTIKLWDLASGELKLTL 70
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A482RGI7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGI7_9ARCH)

HSP 1 Score: 97.8 bits (242), Expect = 1.990e-23
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLT 168
            P WHAPWKLMRVISGH G V   AV+ SNEWFATGSADRTI +WDLASG  +VTLT
Sbjct:   13 PAWHAPWKLMRVISGHLGWVHAVAVDASNEWFATGSADRTIKIWDLASGALRVTLT 68
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BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: UPI0006C9C57B (pleiotropic regulator 1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9C57B)

HSP 1 Score: 105 bits (261), Expect = 2.220e-23
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLT 168
            P+WHAPWKL RVISGH G VRCCAVEP NEWFATGSADR I VWDLASG  K++LT
Sbjct:  120 PKWHAPWKLYRVISGHLGWVRCCAVEPGNEWFATGSADRIIKVWDLASGQLKISLT 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Match: A0A4S2JNA4_9HYME (Uncharacterized protein n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2JNA4_9HYME)

HSP 1 Score: 105 bits (262), Expect = 3.720e-23
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 PEWHAPWKLMRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLT 168
            P+WHAPWKL RVISGH G VRCCAVEP NEWFATGSADR I +WDLASG  KV+LT
Sbjct:  396 PKWHAPWKLYRVISGHLGWVRCCAVEPGNEWFATGSADRVIKIWDLASGRLKVSLT 451
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110338.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V9IGK5_APICE2.180e-2480.00Pleiotropic regulator 1 n=1 Tax=Apis cerana TaxID=... [more]
A0A4Q0A102_9FUNG5.520e-2481.82WD40-repeat-containing domain protein n=1 Tax=Dima... [more]
R1DD85_EMIHU7.470e-2482.14ATP-grasp domain-containing protein n=1 Tax=Emilia... [more]
A0A7S3T2P6_EMIHU8.830e-2481.82Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S4BPM7_CHRCT9.080e-2480.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI0006C9CBA21.280e-2378.57pleiotropic regulator 1 n=1 Tax=Copidosoma florida... [more]
A0A7S1DPI7_HEMAN1.370e-2378.18Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
A0A482RGI7_9ARCH1.990e-2376.79Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI0006C9C57B2.220e-2380.36pleiotropic regulator 1-like n=1 Tax=Trichogramma ... [more]
A0A4S2JNA4_9HYME3.720e-2380.36Uncharacterized protein n=1 Tax=Temnothorax longis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110338contigM-pyrifera_M_contig110338:80..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog2903.EOD12475
KEGG koko:K12862
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG0285@1,KOG0285@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Exons1
Model size519
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.3990889-CDS-M-pyrifera_M_contig110338:79..5711622815614.3990889-CDS-M-pyrifera_M_contig110338:79..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110338 80..571 -
1692277488.13218-CDS-M-pyrifera_M_contig110338:79..5711692277488.13218-CDS-M-pyrifera_M_contig110338:79..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110338 80..571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.4142985-UTR-M-pyrifera_M_contig110338:571..5981622815614.4142985-UTR-M-pyrifera_M_contig110338:571..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110338 572..598 -
1692277488.14298-UTR-M-pyrifera_M_contig110338:571..5981692277488.14298-UTR-M-pyrifera_M_contig110338:571..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110338 572..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110338.2161.1prot_M-pyrifera_M_contig110338.2161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110338 80..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110338.2161.1

>prot_M-pyrifera_M_contig110338.2161.1 ID=prot_M-pyrifera_M_contig110338.2161.1|Name=mRNA_M-pyrifera_M_contig110338.2161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MRVISGHTGQVRCCAVEPSNEWFATGSADRTIMVWDLASGTRKVTLTGHI
STVRGVAISTRQPYLFSVGEDKQVKCWDLEYNQVIRHYHGHLSGVYCCAL
HPTLDVLFTGGRDASVRVWDIRTKAQVHVLTGHKHIVMSIASQPTDPQVI
TGSMDSTVRTWCAS
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mRNA from alignment at M-pyrifera_M_contig110338:80..598-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110338.2161.1 ID=mRNA_M-pyrifera_M_contig110338.2161.1|Name=mRNA_M-pyrifera_M_contig110338.2161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig110338:80..598- (Macrocystis pyrifera P11B4 male)
CCCGAGTGGCATGCGCCGTGGAAATTGATGCGAGTGATCAGCGGCCACAC
GGGCCAAGTGCGATGCTGTGCAGTGGAGCCCTCGAATGAGTGGTTCGCCA
CGGGATCTGCAGACAGAACGATCATGGTGTGGGACTTGGCGTCAGGAACA
CGAAAGGTGACGCTCACTGGACATATCTCCACAGTGAGAGGAGTGGCCAT
CTCCACGAGGCAGCCCTACCTCTTCAGCGTGGGTGAGGACAAGCAGGTGA
AGTGCTGGGACCTCGAGTACAACCAAGTGATCAGACATTATCACGGCCAT
CTCTCTGGTGTCTACTGTTGTGCTCTCCACCCCACGCTCGACGTTCTCTT
CACCGGCGGTCGCGACGCCAGTGTGCGAGTGTGGGACATCCGCACCAAGG
CCCAGGTGCACGTCCTCACCGGCCACAAGCACATCGTCATGAGCATTGCC
TCACAGCCCACCGACCCTCAGGTCATCACCGGCTCCATGGACTCTACCGT
CCGCACTTGGTGCGCCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110338:80..598-

>mRNA_M-pyrifera_M_contig110338.2161.1 ID=mRNA_M-pyrifera_M_contig110338.2161.1|Name=mRNA_M-pyrifera_M_contig110338.2161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig110338:80..598- (Macrocystis pyrifera P11B4 male)
ATGCGAGTGATCAGCGGCCACACGGGCCAAGTGCGATGCTGTGCAGTGGA
GCCCTCGAATGAGTGGTTCGCCACGGGATCTGCAGACAGAACGATCATGG
TGTGGGACTTGGCGTCAGGAACACGAAAGGTGACGCTCACTGGACATATC
TCCACAGTGAGAGGAGTGGCCATCTCCACGAGGCAGCCCTACCTCTTCAG
CGTGGGTGAGGACAAGCAGGTGAAGTGCTGGGACCTCGAGTACAACCAAG
TGATCAGACATTATCACGGCCATCTCTCTGGTGTCTACTGTTGTGCTCTC
CACCCCACGCTCGACGTTCTCTTCACCGGCGGTCGCGACGCCAGTGTGCG
AGTGTGGGACATCCGCACCAAGGCCCAGGTGCACGTCCTCACCGGCCACA
AGCACATCGTCATGAGCATTGCCTCACAGCCCACCGACCCTCAGGTCATC
ACCGGCTCCATGGACTCTACCGTCCGCACTTGGTGCGCCTCTATGCGAGT
GATCAGCGGCCACACGGGCCAAGTGCGATGCTGTGCAGTGGAGCCCTCGA
ATGAGTGGTTCGCCACGGGATCTGCAGACAGAACGATCATGGTGTGGGAC
TTGGCGTCAGGAACACGAAAGGTGACGCTCACTGGACATATCTCCACAGT
GAGAGGAGTGGCCATCTCCACGAGGCAGCCCTACCTCTTCAGCGTGGGTG
AGGACAAGCAGGTGAAGTGCTGGGACCTCGAGTACAACCAAGTGATCAGA
CATTATCACGGCCATCTCTCTGGTGTCTACTGTTGTGCTCTCCACCCCAC
GCTCGACGTTCTCTTCACCGGCGGTCGCGACGCCAGTGTGCGAGTGTGGG
ACATCCGCACCAAGGCCCAGGTGCACGTCCTCACCGGCCACAAGCACATC
GTCATGAGCATTGCCTCACAGCCCACCGACCCTCAGGTCATCACCGGCTC
CATGGACTCTACCGTCCGCACTTGGTGCGCCTCT
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