mRNA_M-pyrifera_M_contig11029.2156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11029.2156.1
Unique NamemRNA_M-pyrifera_M_contig11029.2156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: D8LFI3_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI3_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.170e-59
Identity = 95/130 (73.08%), Postives = 108/130 (83.08%), Query Frame = 2
Query:    5 AVRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIRF 394
            A+R AL K++RSKGFMWLAFSDKAAMYWSHAG+SFEV CLGRWWDSL R  WPPG   A+ EDFEG YGDRRQELVFIG+GM EE+ R  I  ALD CLLTDEEM+VY+ +RE+A+ LPE FPS LR+RF
Sbjct:  468 ALRMALRKVVRSKGFMWLAFSDKAAMYWSHAGASFEVLCLGRWWDSLERELWPPGSAEAVMEDFEGKYGDRRQELVFIGMGMCEESTRGPIVKALDGCLLTDEEMEVYESVRETADELPEAFPSPLRVRF 597          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A836CKL1_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.380e-43
Identity = 79/131 (60.31%), Postives = 96/131 (73.28%), Query Frame = 2
Query:    2 AAVRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIRF 394
            A  R AL +L+RSKGF+WLA SD AAMYWSHAG  FE+ CLGRWW S+ R  WP GQEAAI EDFE  +GDRRQELVFIGL ++ +  +S I +ALD CLLTDEE  VY+  R+  + L E FP+ + IR+
Sbjct:  561 AVARQALRRLVRSKGFLWLACSDVAAMYWSHAGRHFEMQCLGRWWASVPRPAWPQGQEAAITEDFEEPHGDRRQELVFIGLDVANQKVQSIIASALDECLLTDEEWAVYEASRKDQKKLDEAFPNFIAIRY 691          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A7S1ZNR7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNR7_TRICV)

HSP 1 Score: 126 bits (317), Expect = 6.060e-33
Identity = 64/120 (53.33%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   11 RSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEG--------------VYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVY 328
            R AL + LRSKGF WLA SD+AA+YWSHAG SFE+ CLGRWW +L R QWPP     I  +F+                 GDRRQE+VFIG  +S++  RS++T ALD+CLLT EE +VY
Sbjct:   48 RRALSRCLRSKGFAWLANSDEAALYWSHAGRSFEMQCLGRWWATLPRDQWPPEAAETILAEFDDPNHVEDPTYPRDPVTVGDRRQEIVFIGPTLSDDDARSAVTEALDSCLLTREEWEVY 167          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A8J2SRV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRV0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.230e-30
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 2
Query:   17 ALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIR 391
            AL  ++RSKGF+WLA S  AA YWSHAG+ F    +GRWW +L   ++P    A+I  DF+G  GDRRQE+VFIG+G    A +++IT ALDACLLTD+EM  Y    + A   PE+FPS LR+R
Sbjct:  501 ALATIVRSKGFLWLASSHDAAYYWSHAGNHFAAELMGRWWATLPEDRYPEDMRASILSDFDGEDGDRRQEIVFIGVGAV--AQQAAITEALDACLLTDDEMAAYRAADDDAR--PELFPSDLRVR 621          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: K0RTA9_THAOC (CobW C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTA9_THAOC)

HSP 1 Score: 126 bits (316), Expect = 2.300e-30
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 2
Query:   29 LLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGV---------YGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIRF 394
            +LRSKGF W A S+  A+YWSHAGSSFE+ CLGRWW +L R+QWP      I  DF+ V          GDRRQE+VFIG G+  +   S+IT  LD+CLLTDEE + +   R+    L   F S++ IR 
Sbjct:  302 ILRSKGFAWTADSNIKALYWSHAGSSFEMQCLGRWWATLHRSQWPEENTEGILSDFDSVDHNESKGDTVGDRRQEIVFIGPGLGAKTSESAITEMLDSCLLTDEEWETFRLNRDDESYLISCFESTIDIRM 432          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A0G4HWR3_9ALVE (CobW C-terminal domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HWR3_9ALVE)

HSP 1 Score: 119 bits (298), Expect = 7.860e-30
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    8 VRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRE 343
            VR AL  ++RSKGF+WLA SD     WSHAG +FE+  LG WWD   R  WP   E  I  DFEG +GDRRQ+LVFIG  +++   R+ +  ALDA LLTD E++ Y + RE
Sbjct:   42 VREALSGVVRSKGFIWLASSDTLCYQWSHAGRTFEMQLLGLWWDVRDREDWPEEFEEQILRDFEGEFGDRRQQLVFIGTSVADPKLRNELEDALDAALLTDAELEAYTQERE 153          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A7S2Y1P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.810e-29
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = 2
Query:    5 AVRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGL---------GMSEEA--PRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIRF 394
            ++++ALG ++RSKGF WLA  D AAMYWSHAGS FE+ C G+WW  + R  WPP     I +DFEG  GDRRQE+VFIG+         G   E+  P+  I  ALD+CL TDEEM+V     +      E F  +++IR+
Sbjct:  363 SLQAALGCIVRSKGFSWLANMDVAAMYWSHAGSQFEMQCQGQWWAGVPREMWPPENIEVILQDFEGDGGDRRQEIVFIGMLGANIAVEDGEPSESKTPQEIIEDALDSCLATDEEMEVLKT--QGIREATEAFRGNMKIRY 501          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: A0A6S8CKI4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CKI4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.410e-29
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 2
Query:    5 AVRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPS 376
            A+ SA   L+RSKGFMWLA S  AA YWSHAG  F+   LGRWW +L R  WP  Q  AI  DF+G +GDRRQE+VFIG  M   + +  I  ALDACLLTD+E  VY E+ +S +     FPS
Sbjct:  493 ALTSAFKLLVRSKGFMWLASSHDAAFYWSHAGKFFDAPILGRWWATLPREYWPADQVEAIEADFDGQFGDRRQEIVFIG--MDALSNQKLIEDALDACLLTDDEFSVYTEL-DSEDARKARFPS 613          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: B7FPZ0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPZ0_PHATC)

HSP 1 Score: 117 bits (292), Expect = 2.800e-26
Identity = 59/139 (42.45%), Postives = 83/139 (59.71%), Query Frame = 2
Query:    2 AAVRSALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFE-----------GVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLR 385
            A  +SA+ K+LRSKGF+W A S + A YWSHAG SFE+  LG+WW +L R QWP     AI  D++           G  GDRRQE+V IG GM     +  +++ LD CLL D+E+D ++E +     L + FP+ ++
Sbjct: 1199 ATAKSAMKKILRSKGFVWCADSFEVARYWSHAGISFELTNLGKWWATLPREQWPQEAIRAILADYDDANHDDQSASTGTVGDRRQEVVLIGPGMGGPTAQKEVSSILDKCLLRDDELDFFNEKKLDEGALQKAFPNPIQ 1337          
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Match: F0YA64_AURAN (CobW C-terminal domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA64_AURAN)

HSP 1 Score: 115 bits (287), Expect = 3.730e-26
Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   14 SALGKLLRSKGFMWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFEGVY--GDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESAENLPEVFPSSLRIR 391
            +AL  L+RSKGF+WLA S  AA YWSHAG+ F    LGRWW +L    WP   + +I  DF+G    GDRRQE+VFIG  +   A + +I AALD CLLTD+E+  Y    ++A  L  +FPS L+I+
Sbjct:  331 AALATLVRSKGFLWLASSHDAAYYWSHAGAFFNAELLGRWWATLPEEHWPEDLKPSILADFDGDSPDGDRRQEIVFIGADLL--AKQGTIEAALDGCLLTDDELAAYRGADDAA--LEALFPSDLKIK 454          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11029.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI3_ECTSI3.170e-5973.08CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A836CKL1_9STRA3.380e-4360.31CobW/HypB/UreG, nucleotide-binding domain-containi... [more]
A0A7S1ZNR7_TRICV6.060e-3353.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A8J2SRV0_9STRA1.230e-3052.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K0RTA9_THAOC2.300e-3048.85CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A0G4HWR3_9ALVE7.860e-3051.79CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S2Y1P1_9STRA1.810e-2946.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8CKI4_9STRA7.410e-2954.03Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B7FPZ0_PHATC2.800e-2642.45Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
F0YA64_AURAN3.730e-2649.22CobW C-terminal domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11029contigM-pyrifera_M_contig11029:1824..6613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.6e-45
Seed eggNOG ortholog2880.D8LFI3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
Ec32 ortholog descriptionCobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
Ec32 orthologEc-04_002080.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size712
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11029.2156.1prot_M-pyrifera_M_contig11029.2156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11029 2136..6564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.0999906-UTR-M-pyrifera_M_contig11029:1823..21351622815614.0999906-UTR-M-pyrifera_M_contig11029:1823..2135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11029 1824..2135 -
1692277488.0085285-UTR-M-pyrifera_M_contig11029:1823..21351692277488.0085285-UTR-M-pyrifera_M_contig11029:1823..2135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11029 1824..2135 -
1622815614.2026541-UTR-M-pyrifera_M_contig11029:6564..66131622815614.2026541-UTR-M-pyrifera_M_contig11029:6564..6613Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11029 6565..6613 -
1692277488.0588663-UTR-M-pyrifera_M_contig11029:6564..66131692277488.0588663-UTR-M-pyrifera_M_contig11029:6564..6613Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11029 6565..6613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.1132154-CDS-M-pyrifera_M_contig11029:2135..21921622815614.1132154-CDS-M-pyrifera_M_contig11029:2135..2192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 2136..2192 -
1692277488.0202858-CDS-M-pyrifera_M_contig11029:2135..21921692277488.0202858-CDS-M-pyrifera_M_contig11029:2135..2192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 2136..2192 -
1622815614.1656876-CDS-M-pyrifera_M_contig11029:3873..40171622815614.1656876-CDS-M-pyrifera_M_contig11029:3873..4017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 3874..4017 -
1692277488.0297248-CDS-M-pyrifera_M_contig11029:3873..40171692277488.0297248-CDS-M-pyrifera_M_contig11029:3873..4017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 3874..4017 -
1622815614.1791267-CDS-M-pyrifera_M_contig11029:5664..57651622815614.1791267-CDS-M-pyrifera_M_contig11029:5664..5765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 5665..5765 -
1692277488.0388145-CDS-M-pyrifera_M_contig11029:5664..57651692277488.0388145-CDS-M-pyrifera_M_contig11029:5664..5765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 5665..5765 -
1622815614.1916451-CDS-M-pyrifera_M_contig11029:6515..65641622815614.1916451-CDS-M-pyrifera_M_contig11029:6515..6564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 6516..6564 -
1692277488.047863-CDS-M-pyrifera_M_contig11029:6515..65641692277488.047863-CDS-M-pyrifera_M_contig11029:6515..6564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11029 6516..6564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11029.2156.1

>prot_M-pyrifera_M_contig11029.2156.1 ID=prot_M-pyrifera_M_contig11029.2156.1|Name=mRNA_M-pyrifera_M_contig11029.2156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MWLAFSDKAAMYWSHAGSSFEVFCLGRWWDSLGRAQWPPGQEAAIAEDFE
GVYGDRRQELVFIGLGMSEEAPRSSITAALDACLLTDEEMDVYDEMRESA
ENLPEVFPSSLRIRFP*
back to top

mRNA from alignment at M-pyrifera_M_contig11029:1824..6613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11029.2156.1 ID=mRNA_M-pyrifera_M_contig11029.2156.1|Name=mRNA_M-pyrifera_M_contig11029.2156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4790bp|location=Sequence derived from alignment at M-pyrifera_M_contig11029:1824..6613- (Macrocystis pyrifera P11B4 male)
GGCGGCCGTTCGCTCGGCGCTCGGGAAGCTGTTGCGATCGAAGGGTTTCA TGTGGCTCGCCTTCAGCGACAAGGCCGCCATGTACTGGTCCCACGCCGGT GAGAGGGTGTCTTGCTTTTGCCGCCCTTCGGAACTGTTTGTGGGTGGGCG GGGAGTGGGGTGGGGGTAGAAGGGGTTGGTTAGGGTGGGGTGTGTGTAGA GGGGCGTGGTTGAGTCGGGGGGGGGGGTTCATTGGAGGGGTGGGGGGGGT GGAGAGGGGTCGGGGGGAGGGTTGGGGGCGGGGTTGGTTCGGGGAGGAGA GGGGGGGGAGGGGGCAGTTCCCGTGTTGGTTTTGTTTCAACAATTTCGAG CGGCGAAGCAGAGGGTGACCGAACCGTGACGTGCTGTTTATCTCTCCGCA GACCTCTGTTGTCGGCTGGGCATAATCTCTCTATTCCGGGGCGTGCTGGT ATGTATGCACCCCGAGTGCATCAGCAGTGTATAGGTCGCGACAAGGCTGA AATGAGAGCGTTCGCTTTGTCGGTGCCTCACTCGTGTGGGGATGCTCGTG GAGGCGATGCTTCCCCTCCCCCCCGCCACTGCTATTGTAGGGCGAGAACG CAGCGAGGCAGACCGCGGCCCCGTGCGCTCTTGCTCGAGTAACTACGGTC GCTGATGGCGGACTTACCGTATCATGCCGCTAGGAGGAGATAGTTAAGCG GGGAAATCATTAGTGTCGGTCGGAATGCATAGGAACGCCGGGGTTTTTTT TTTCTCTCTTTGTTGCTCGTTTGAGCTTCGGCTTTTAACGCCCGACTGAG GAGATTAATGCCTGCGCTTATTTGTTTTTTCCGCGCGTCTGCCCGCAGGT TCGAGCTTTGAGGTGTTTTGTCTGGGGCGGTGGTGGGATAGCCTGGGGCG CGCGCAATGGCCACCCGGACAGGAGGCGGCCATCGCCGAAGACTTTGAGG TGAGACTGGAACGCACCAACCCTACCTCTAATCTAGCCCCGCCGTACTCC TGTCCCGGAGGCATGCGTGGTCAATGGTCAGATGACTAAGGCGAGCAGCG AATGAGTACGCCCCCCCGCCCATCCCCCCCCCTCCCGCCCCCTCCCCGTT TGATGTAAGGCACAGGATCTCCGAAATCGCGCTGAACTCCATCATGAAAG CCGAGAGGAAAACAATTTATGATACAACACCACTTGAAGGCACGTCTTAT GTTGGGCCAGTCTCGAATCTCTTAAGAGAGGCAGGGTGTGTCCTACTCCA ATTTCAGTCCAGAAATGGCCACATTCAGTCTGATCCTCGCTCCAAAACTC GAGCCTGATATTCTTCAGGCGTGGAAGACTGCAGCCCCGCTTCGGGGGAC TTGCCAGTCAAATACTTGAAAACGAGGCTGCAGTTTTCCCTCTAATGGTT AACTCCTTTTCTTACATGGTGCCGCGCACTGTACAACAGCAAAACGCCAA ATAAGAAGAACGAGCAGTAAGAAAGGAAGTCCCCGAGATTGGTGCCGGAA AAAATTAAGAAATTCGGGAGCCGTTGTGCTGAAGTTAGTGTAGAAGGCAC CCATTCTCAAGTATGAGATCCAGCCTGGACTTTTAAGCCGTTTTTCCTGT TTCTGGTTCGGTGTCCTGCGCTTTAATGTGTGTTTTGTGTGCTTGCTGGT TGTTACTTTCCCGCAGTGTTCTCGTTGGTGAAATGGTCATGAGGTTCGAC TACCGCCATCGTCGGGTTTGTGTTTTTTTGCGACGGGCCGATGCGAGCCC GTTGCAGACAAACGCCACGAGATAACGTGCGATGAAGCAGTTTTGCGATG GAAAAAGTGCCTTCGTTGCGTGGCAGGTCGATGACTTAACTCTTTTGTTT TCTTTCGTGCTGGATGGACCCAGCGCGATTGCGCTGTTAGCCCTGACTGG TATATTAAAATGACTGCGATGATTGCAGTGTATGGCAGAAGCCGGTACAG GTCTTGCGAGGCGACGTCAATTTTGACATGAGACAGAGGGCGAAGAAACA CAAGAGCGAAAAACACATCGGGGACACCCTCCGTCCTTTTTCCTCCGTGT CGCACCTTAGGACCATGGAGCCTATTATTAATAGGTCGTGTTGCGCCTAT AGCTGCTCCTATTTTCCTCTGCGCGTTTCATCCCGTACTTGTTTTTGGGC GGGTGTCGTACGCGCGTCTTTTTGTTGTTGCTGTTGTTTATTTCGGGCGA AAGCGAATTTCTATTTTTGACGGGACAAAAAAAAAGAACATAGGGGCCCG TTTCAAATCAAGCCTTGTGAGGCGTCCGCCGTCTACACTGAAAAAAAACA ATTGAAAATAAAAATAAAAACGAGGACTGACGATTTTGTTTTGTGAACTC GGTCTACCAGACCGCCCACCACCAGTCTGCCAACGCACACAAGTTGGCGA CAGTTATAAATGTCCTTTCTTCGCGAGTTCCTATTATGGGGGTCCATAGT TAATAGGACCTATGGCACACACAAAAACCTATATATTTACCTATTTTTAC CAACAAAATGTGGTCCCATTAACTATGGACCCCCGTAATAGCGGCGGGTG CTGTATGACACTCAAGCTTTCGTTTTTTGCGCCTCTGGTCTGGTAGGGTG TCTACGGCGACCGACGGCAAGAGCTAGTGTTCATCGGCCTCGGCATGAGC GAAGAGGCTCCGCGGAGCTCGATCACCGCCGCCCTCGACGCGTGCCTGCT GACGGACGAGGAGATGGACGTTTACGACGAGATGCGAGAGGTATGGTGAC ATCACTGCATCACTGCTGCACGTCGCTGTACAGCTGCGGCAGGAATCACT TTTAGTAGATTACGAAGTATCGCTCTGCACTGTGCATCACTGCTTGTGTA CCTGGTATCACCATGTGGGCGTCTACGACGAGATGCGAGAGGTGTGCTGT CAACATACGTCCATAGCGGTGGTATGGTGGTATTACGGGGGACCATATTA AATAGGACCTACGGTACACATAAAAACCTATGTGTTTCGCTATTTTTCCT GACAATATTTGGTCCTATTTACTAGGGTCCCCCGTAAATGGTTGTATTGG TGGCGTGGAAATCACGGTATAGCAGTATCACTCAGTTTGTTGTCAAGTAT TGTATCACTGTATCACTATATTGGGCTGTCACGACGAGATGCGAGAGGTA TGATGTCACTACGCTTGAATATGGGTGGTGCATTAGTGGAATGTAGTGTT GATATCAATATCACTGTACAGTTATCACTGGGCTGTGAAGTACCGTTTCA CTGTATCAGTGTGGAGTATCATGTACTGTGCATCAGGGTGGCGAAGGGGT GAAAAATTTCAATAATTGATGGGGTTTTTTTTTTCAAGAGGCGATACCGT ACAGGGTTGCTATTAATAGCAGCGGTGCGGGCGTTAGGTTGGTTTCGCGT CGTGCGTGTGGCGATGCATGGTAGGGTTCTTGTTTGCTGATCGGCTCTTG CTTGGAGGGAATTGAAAAAAGAGGGGAAGGAAGAGATGTTGGAATTGGTG TGCGCGTGTTTTGGTGACGCCCATATGTGAGTGTGGGTAGTTGCTCGTGG CTGTCTAGGTTGCGCGTTGCTACTTTTACGGGCGGCCATAGTTAATAGGA CCTCCGGTACACACAAAAATATATCTGTTTACCTGTTTTTACTAACAATA TTTGATTCCTGTTGACTATGGCCCCCCGTAATAATAGTCGTGCGCAACGC CACTTGTGCAGCAAGCGCTACTACCAGCTGGTACTGGCATTCACATCGCC CCAATGCTGTGTTGCGCTGATGTATATCAGTCACCGGCAAGAAATTTATC ACCCACTTTCTGTGAGAGAACACGATCTCCCTCGAACTTGCCGTCGTAGC CGCGCACACAAGTCAACCTAAATGTGGTGGAAGGAGAGCTGCCAAGATGG GGGACGTATTGGCTGGCGCCCGCTTCACCTGTAACCTGTAGCGGCTTGTT TGTTGACCCTGCGATACCCGTACCCCCGTATTCGAGAGGACATAATACTT AAATTGAAATTAGAGTTGAATAATTTTTGCAGCTCTACAAGGGTTAGCCC TTACCCTGTACGATATGGCCATGACTACCCGACTCTGGATTCAAGAACAT ACCACAGCTTGTCCCCAGCGTGGGCGCAAGTTGTGTGGTGATATTGCCCC GACGGGCTAGTCCTTTTTATCGGTGGGAGACTCTTCCGCTCCCACGAATC GTCTAAGGGTGAATGCGTACAGCTCTACCCAAGTGCCAGACTACCGTTTA AGCTGGTGTGTGTCACGCCCACGCCTTTCCTCTCGCTTCGCTTCGACTGT TTCCGTGTGTTGAGAAGGACACCATCGATGTCAGCTTGTTGTTTAGATGG TCATAAGACTACGGCCATGCATGATAATGAGAATGAGTACCCCCCCCCCT TGTCCCCGTCCCCTCCTGCAGTCGGCGGAGAATCTGCCCGAGGTCTTTCC AAGCTCACTGCGCATCAGGTTCCCCTGAGCTGTAGTTCCGGTTGGATAGC TCCAACGACTTCTGAGAGGCTCTGGCGAACTTAACCCGTACTGTATCTGG GCGGAACACCTATCCGCTGCTTTGGAGCCGTGGAACACCTATACAGCTAC ATGTAAAGCAGCCGTGCGTTGCGCAGCCCTTGCAGAGAGCTACCCTAGAT GCGGTGGGTGTTACGGGCGGGTGGTGCGGTGGCGCGGTTTGCAGCTGCTA GTGTGCGGGTAGTACTGGCTGTGGCGTGTACCGCGGAATGCGGGCGCAGC TCGCGTCCCTGGGTGTGTCTTTTAAAAATGAAAGATTACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11029:1824..6613-

>mRNA_M-pyrifera_M_contig11029.2156.1 ID=mRNA_M-pyrifera_M_contig11029.2156.1|Name=mRNA_M-pyrifera_M_contig11029.2156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig11029:1824..6613- (Macrocystis pyrifera P11B4 male)
ATGTGGCTCGCCTTCAGCGACAAGGCCGCCATGTACTGGTCCCACGCCGA
TGTGGCTCGCCTTCAGCGACAAGGCCGCCATGTACTGGTCCCACGCCGGT
TCGAGCTTTGAGGTGTTTTGTCTGGGGCGGTGGTGGGATAGCCTGGGGCG
CGCGCAATGGCCACCCGGACAGGAGGCGGCCATCGCCGAAGACTTTGAGG
TTCGAGCTTTGAGGTGTTTTGTCTGGGGCGGTGGTGGGATAGCCTGGGGC
GCGCGCAATGGCCACCCGGACAGGAGGCGGCCATCGCCGAAGACTTTGAG
GGTGTCTACGGCGACCGACGGCAAGAGCTAGTGTTCATCGGCCTCGGCAT
GAGCGAAGAGGCTCCGCGGAGCTCGATCACCGCCGCCCTCGACGCGTGCC
TGCTGACGGACGAGGAGATGGACGTTTACGACGAGATGCGAGAGGGTGTC
TACGGCGACCGACGGCAAGAGCTAGTGTTCATCGGCCTCGGCATGAGCGA
AGAGGCTCCGCGGAGCTCGATCACCGCCGCCCTCGACGCGTGCCTGCTGA
CGGACGAGGAGATGGACGTTTACGACGAGATGCGAGAGTCGGCGGAGAAT
CTGCCCGAGGTCTTTCCAAGCTCACTGCGCATCAGGTTCCCCTGATCGGC
GGAGAATCTGCCCGAGGTCTTTCCAAGCTCACTGCGCATCAGGTTCCCCT
GA
back to top