mRNA_M-pyrifera_M_contig110262.2153.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110262.2153.1
Unique NamemRNA_M-pyrifera_M_contig110262.2153.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110262.2153.1 vs. uniprot
Match: A0A517PQF6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQF6_9PLAN)

HSP 1 Score: 251 bits (642), Expect = 1.640e-84
Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 MQTLIIINLLLCSAGPGHLRNDEPPASLFVPVPHVMRLPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMSIIPFAPIPMRIDPAEFRLIELELEPPISNREP 390
            MQTLIIINLLLCSAGPGHLRN+EPPASLFVPVPHVM LPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQM IIPFAPIPMRIDPAEFRLIELELEPP S+ EP
Sbjct:    1 MQTLIIINLLLCSAGPGHLRNEEPPASLFVPVPHVMPLPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMPIIPFAPIPMRIDPAEFRLIELELEPPRSSFEP 130
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BLAST of mRNA_M-pyrifera_M_contig110262.2153.1 vs. uniprot
Match: A0A6I6AJM2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AJM2_9PLAN)

HSP 1 Score: 224 bits (570), Expect = 1.560e-73
Identity = 107/130 (82.31%), Postives = 120/130 (92.31%), Query Frame = 1 
Query:    1 MQTLIIINLLLCSAGPGHLRNDEPPASLFVPVPHVMRLPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMSIIPFAPIPMRIDPAEFRLIELELEPPISNREP 390
            MQT+IIINLLLCSAGPGHLRND+PPASLFVPVPHVM LPTGEL GLTF+MIP I D+QDLPN+PWDADWEE+DPDQ+YEVIKDLENVEPQ+II GQ+ +I   P+P++IDPAEFRLIELELEPPISN EP
Sbjct:    1 MQTIIIINLLLCSAGPGHLRNDDPPASLFVPVPHVMPLPTGELAGLTFDMIPDIFDMQDLPNDPWDADWEELDPDQLYEVIKDLENVEPQIIIRGQVPMIFINPVPIQIDPAEFRLIELELEPPISNSEP 130
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BLAST of mRNA_M-pyrifera_M_contig110262.2153.1 vs. uniprot
Match: A0A2E7KG10_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KG10_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 4.130e-69
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 1 
Query:    1 MQTLIIINLLLCSAGPGHLRNDEPPASLFVPVPHVMRLPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMSIIPFAPIPMRIDPAEFRLIELELEPPISNREP 390
            MQTLIIINLLLCSAGPGH+RND+PP S+ VPVPHVM LP GE  GLTF+MIP I DLQ+LPN+PWDADWEEIDPDQ++EVIKDLENVEPQ+IIPGQ+ +    P+P++IDPAEFRLIELELEPPISN EP
Sbjct:    1 MQTLIIINLLLCSAGPGHVRNDDPPTSVVVPVPHVMPLPMGEPAGLTFDMIPDIVDLQELPNDPWDADWEEIDPDQLFEVIKDLENVEPQIIIPGQLPMNFINPVPIQIDPAEFRLIELELEPPISNSEP 130
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BLAST of mRNA_M-pyrifera_M_contig110262.2153.1 vs. uniprot
Match: UPI00119E2ABD (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00119E2ABD)

HSP 1 Score: 159 bits (401), Expect = 2.940e-48
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:  106 MRLPTGELEGLTFEMIPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMSIIPFAPIPMRIDPAEFRLIELELEPPISNREP 390
            M LP GE  GLTF+MIP I DLQ+LPN+PWDADWEEIDPDQ++EVIKDLENVEPQ+IIPGQMSII F PIPMR+DPAEFRLIELELEPPISN  P
Sbjct:    1 MPLPMGEPAGLTFDMIPDILDLQELPNDPWDADWEEIDPDQMFEVIKDLENVEPQIIIPGQMSIILFDPIPMRVDPAEFRLIELELEPPISNSGP 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110262.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A517PQF6_9PLAN1.640e-8495.38Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A6I6AJM2_9PLAN1.560e-7382.31Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A2E7KG10_9PLAN4.130e-6978.46Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
UPI00119E2ABD2.940e-4882.11hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110262contigM-pyrifera_M_contig110262:29..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.9733493-CDS-M-pyrifera_M_contig110262:28..4211622815613.9733493-CDS-M-pyrifera_M_contig110262:28..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110262 29..421 +
1692277487.9499996-CDS-M-pyrifera_M_contig110262:28..4211692277487.9499996-CDS-M-pyrifera_M_contig110262:28..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110262 29..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110262.2153.1prot_M-pyrifera_M_contig110262.2153.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110262 29..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110262.2153.1

>prot_M-pyrifera_M_contig110262.2153.1 ID=prot_M-pyrifera_M_contig110262.2153.1|Name=mRNA_M-pyrifera_M_contig110262.2153.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MQTLIIINLLLCSAGPGHLRNDEPPASLFVPVPHVMRLPTGELEGLTFEM
IPGIDDLQDLPNNPWDADWEEIDPDQIYEVIKDLENVEPQVIIPGQMSII
PFAPIPMRIDPAEFRLIELELEPPISNREP*
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mRNA from alignment at M-pyrifera_M_contig110262:29..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110262.2153.1 ID=mRNA_M-pyrifera_M_contig110262.2153.1|Name=mRNA_M-pyrifera_M_contig110262.2153.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig110262:29..421+ (Macrocystis pyrifera P11B4 male)
ATGCAAACACTCATCATCATAAATCTGTTACTCTGCTCCGCCGGACCCGG
TCACTTGCGAAATGACGAGCCGCCAGCTTCCCTGTTCGTGCCGGTTCCCC
ACGTTATGCGGTTACCAACGGGCGAACTTGAGGGGCTGACCTTCGAGATG
ATTCCTGGCATAGATGATCTGCAGGATTTACCCAATAATCCCTGGGACGC
AGACTGGGAGGAGATCGATCCCGATCAGATTTATGAAGTCATCAAAGACC
TGGAAAACGTGGAGCCCCAGGTAATCATCCCGGGCCAGATGTCGATCATT
CCTTTCGCCCCCATTCCAATGCGGATCGATCCAGCTGAGTTTCGATTGAT
AGAACTCGAATTAGAACCTCCCATTTCAAACAGAGAACCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110262:29..421+

>mRNA_M-pyrifera_M_contig110262.2153.1 ID=mRNA_M-pyrifera_M_contig110262.2153.1|Name=mRNA_M-pyrifera_M_contig110262.2153.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig110262:29..421+ (Macrocystis pyrifera P11B4 male)
ATGCAAACACTCATCATCATAAATCTGTTACTCTGCTCCGCCGGACCCGG
TCACTTGCGAAATGACGAGCCGCCAGCTTCCCTGTTCGTGCCGGTTCCCC
ACGTTATGCGGTTACCAACGGGCGAACTTGAGGGGCTGACCTTCGAGATG
ATTCCTGGCATAGATGATCTGCAGGATTTACCCAATAATCCCTGGGACGC
AGACTGGGAGGAGATCGATCCCGATCAGATTTATGAAGTCATCAAAGACC
TGGAAAACGTGGAGCCCCAGGTAATCATCCCGGGCCAGATGTCGATCATT
CCTTTCGCCCCCATTCCAATGCGGATCGATCCAGCTGAGTTTCGATTGAT
AGAACTCGAATTAGAACCTCCCATTTCAAACAGAGAACCATGAATGCAAA
CACTCATCATCATAAATCTGTTACTCTGCTCCGCCGGACCCGGTCACTTG
CGAAATGACGAGCCGCCAGCTTCCCTGTTCGTGCCGGTTCCCCACGTTAT
GCGGTTACCAACGGGCGAACTTGAGGGGCTGACCTTCGAGATGATTCCTG
GCATAGATGATCTGCAGGATTTACCCAATAATCCCTGGGACGCAGACTGG
GAGGAGATCGATCCCGATCAGATTTATGAAGTCATCAAAGACCTGGAAAA
CGTGGAGCCCCAGGTAATCATCCCGGGCCAGATGTCGATCATTCCTTTCG
CCCCCATTCCAATGCGGATCGATCCAGCTGAGTTTCGATTGATAGAACTC
GAATTAGAACCTCCCATTTCAAACAGAGAACCATGA
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