mRNA_M-pyrifera_M_contig110223.2141.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110223.2141.1
Unique NamemRNA_M-pyrifera_M_contig110223.2141.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI001F5FDCB8 (piggyBac transposable element-derived protein 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5FDCB8)

HSP 1 Score: 68.9 bits (167), Expect = 3.160e-10
Identity = 58/173 (33.53%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   91 NIGSEVRRWEWKLVSRVLHISKRSEDM--EHPE-DNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSK--VQAWCMCDSETAYVWWFE-FCKDSLAYKADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            NI   +   +++ + R LH S  S+ +   HP  D   KVRP+I L+L+N + N     S + DE  +    R+ L  R    K P K  ++ W  C      V+ FE +C+  L  K + PGL      +YR++Q+L SG  + IF DN+F+S  + RLL  +  L V T R
Sbjct:  184 NIADVMTSKQFEKIKRYLHFSDNSKSLPSNHPNYDKLFKVRPLIQLILKN-IKNIPQEESHSIDEQILPTKGRSFL--RQYLPKKPHKWGIKVWARC-GVFGIVYDFETYCRKYLLNKDELPGLLMGGNVVYRLTQSLPSGVNYKIFFDNYFSSIDIFRLLKEKIFLAVATIR 352          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: A0A267GLC7_9PLAT (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GLC7_9PLAT)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-8
Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   40 LASFWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWF-----EFCKDSLAYKADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            ++S+W ++P+   +  S + + + R  +K +   L     ++  E P     K++P +  L R C  N+ P   ++ DE  V Y  R         K+    V+ +C+C+SET Y+W F     E          +  GLS ++  +  + + L+  N+++ F D+ FTS ++A  LL     + GT R
Sbjct:  160 ISSYWSQDPVFHCSFLS-MPNALSRDRFKQLLSCLRFYDCTDVQEGP---LAKIQPFLHQLQRVCSNNYMPRQHISVDETLVLYKGRLLFKQYIPTKRSRYGVKLYCLCESETGYLWNFAVHSTEHANAQFGLGLECGGLSISERIVAELCRELLHMNYNV-FTDSWFTSHRLAVWLLANGTRLTGTVR 343          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI000C255108 (piggyBac transposable element-derived protein 4-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C255108)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-7
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1
Query:   49 FWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPEDNF---IKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAYKADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGT 585
            +W   P  +    S++ S V+R+ W L+S V HI+  S   +    NF    KVRP+IDLLLRN      P   VA DE+ + +  R++L      K V    + W +CD ++ Y   F    D    K   P  +     +  ++  L + + HI++ DN F S  +   L  +    VGT
Sbjct:   31 YWSSGPDLKDHYVSSLMS-VKRFSW-LLSHV-HINDNSAMPDRGSPNFDKLYKVRPLIDLLLRNFQRCLLPSQQVAIDESMIKFKGRSSLKQYMPKKPVKRGYKVWMLCD-KSGYCLKF----DIYTGKTSSPEKALGVRVITHLTVDLRNKD-HILYFDNFFNSVPLMEELKKQNIHAVGT 203          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI001E689072 (piggyBac transposable element-derived protein 4-like n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E689072)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-6
Identity = 51/205 (24.88%), Postives = 91/205 (44.39%), Query Frame = 1
Query:    1 VGLWFLVHFGNVP-LASFWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCM----CDSETAYVWWFEFCKDSLAYKADEP---GLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            +G++ L      P L  +W+K+P+       NI     R+    + R  H    + + +   D   KV+P+ID+++RNC     P   +  DE+ V +  R  LL+R  +   P+K   + +      ++  YVW ++       Y   +P    L K  + +  + + L+     +I  DN +TS  +A+ LL  K  + GT R
Sbjct:  251 LGIYLLTGIIKFPTLECYWKKDPIFYHPLMHNIKMSYNRF--TAILRCWHFVDNTAERD-VNDRLYKVKPVIDIVMRNCRKLLSPKDCIVVDESMVPFQGR--LLIRQYN---PNKTHKYGLKIYKATTDDGYVWKYK------VYTGQDPQIANLDKPGSVVVELCEELLDQG-RMIIADNWYTSLPLAQYLLQRKTDLCGTLR 440          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI001E68DFD8 (piggyBac transposable element-derived protein 4-like n=3 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68DFD8)

HSP 1 Score: 58.5 bits (140), Expect = 1.210e-6
Identity = 51/205 (24.88%), Postives = 91/205 (44.39%), Query Frame = 1
Query:    1 VGLWFLVHFGNVP-LASFWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCM----CDSETAYVWWFEFCKDSLAYKADEP---GLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            +G++ L      P L  +W+K+P+       NI     R+    + R  H    + + +   D   KV+P+ID+++RNC     P   +  DE+ V +  R  LL+R  +   P+K   + +      ++  YVW ++       Y   +P    L K  + +  + + L+     +I  DN +TS  +A+ LL  K  + GT R
Sbjct:  251 LGIYLLTGIIKFPTLECYWKKDPIFYHPLMHNIKMSYNRF--TAILRCWHFVDNTAERD-VNDRLYKVKPVIDIVMRNCRKLLSPKDCIVVDESMVPFQGR--LLIRQYN---PNKTHKYGLKIYKATTDDGYVWKYK------VYTGQDPQIANLDKPGSVVVELCEELLDQG-RMIIADNWYTSLPLAQYLLQRKTDLCGTLR 440          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: A0A3S2NGQ2_CHISP (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2NGQ2_CHISP)

HSP 1 Score: 57.4 bits (137), Expect = 3.060e-6
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   40 LASFWE-KEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEH---PEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAYKADE-PGLSKTQAALYRVSQTLVSG---NWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            L S+W   E + R    +   S  R   ++L+SR LH +  +E++ +    E    K++P++D L     + +D G +++ DE+   +    N       K     +Q + +CDS + Y+W FE    +   + D  PG       +  +   LV G     H I++DNHF S  +AR+L       VGT R
Sbjct:  371 LRSYWNCTEDICRTPGFAVYMSFKR---FQLLSRCLHFNNDAENINNLTPAEAKLSKIKPIVDHLNEKFQSLYDMGQNISLDESLTHWKGPPN-------KAAHVDIQTYEICDSRSGYLWRFEVHAGTHISEDDVIPG------QIPSLVLQLVRGLEHRGHTIWMDNHFNSPSLARVLKTRGFDCVGTLR 546          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI001E1D5C07 (piggyBac transposable element-derived protein 4-like n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5C07)

HSP 1 Score: 54.3 bits (129), Expect = 3.230e-5
Identity = 43/189 (22.75%), Postives = 73/189 (38.62%), Query Frame = 1
Query:   40 LASFWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPE---DNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAY--KADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR 591
            L  +W  +P+    S   I   + R  +  +S+  H++  S +    +   D    VRP+++ +  N MAN+ P      DEA +GY+ R         K     ++ W   D    YV       D   Y  K +  G       +     T +    H ++ DN+FT+  +   L  +     GT+R
Sbjct:  158 LDMYWSSDPMF---SPCGIKERMTRDRYDKISKYFHVADTSCNPARGQPGHDKLSHVRPILEAVRVNLMANYKPHRETTVDEAMIGYTGRLGFKQYVPMKPTKRGIKVWVRADPHNGYV------NDIQVYLGKENRDGDKGLGERVVMDLVTPILNRGHHVYCDNYFTTVGLFEELQQQGTYACGTFR 337          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: UPI000B93568B (piggyBac transposable element-derived protein 4-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B93568B)

HSP 1 Score: 53.5 bits (127), Expect = 5.270e-5
Identity = 44/182 (24.18%), Postives = 75/182 (41.21%), Query Frame = 1
Query:   49 FWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRS---EDMEHPEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAYKADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGT 585
            +W   P       SNI   V R+ W L    LH++  S   +  +   D   KVRP ++L+L+N  A ++P   VA DE+ + +  R +       K +    + W + D +  Y+W F    D    K+ +       A + +     +    + ++ DN+FTS  +   L        GT
Sbjct:   12 YWSSAPDLHDDYISNI-MPVNRFSWLLSH--LHLNDNSVIPKKGDADYDKLYKVRPFLNLILKNSQAVYNPNRIVAIDESMIKFKGRHSSKQYMPKKPIKRGYKVWALAD-KYGYLWNF----DVYTGKSGDTVEKNLGARVVKNLSAPLKNKNYFLYFDNYFTSYPLISYLKSNGIYACGT 185          
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Match: A0A6G0VSW8_APHCR (PiggyBac transposable element-derived protein 4-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VSW8_APHCR)

HSP 1 Score: 53.5 bits (127), Expect = 5.930e-5
Identity = 44/182 (24.18%), Postives = 76/182 (41.76%), Query Frame = 1
Query:   49 FWEKEPLARAASASNIGSEVRRWEWKLVSRVLHISKRSEDMEHPEDNF---IKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRRTNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAYKADEPGLSKTQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGT 585
            +W   P       SNI   V R+ W L    LH++  S   +  + N+    KVRP ++L+L+N  A ++P   VA DE+ + +  R +       K +    + W + D +  Y+W F    D    K+ +       A + +     +    + ++ DN+FTS  +   L        GT
Sbjct:  245 YWSSAPDLHDDYVSNI-MPVNRFSWLLSH--LHLNDNSVIPKKGDANYDKLYKVRPFLNLILKNSQAVYNPNRIVAIDESMIKFKGRHSSKQYMPKKPIKRGYKVWALAD-KYGYLWNF----DVYTGKSGDTIEKNLGARVVKNLSAPLKNKNYFLYFDNYFTSYPLMSYLKSNGIYACGT 418          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110223.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001F5FDCB83.160e-1033.53piggyBac transposable element-derived protein 3-li... [more]
A0A267GLC7_9PLAT1.240e-825.40DDE_Tnp_1_7 domain-containing protein n=1 Tax=Macr... [more]
UPI000C2551081.710e-729.67piggyBac transposable element-derived protein 4-li... [more]
UPI001E6890721.180e-624.88piggyBac transposable element-derived protein 4-li... [more]
UPI001E68DFD81.210e-624.88piggyBac transposable element-derived protein 4-li... [more]
A0A3S2NGQ2_CHISP3.060e-627.08DDE_Tnp_1_7 domain-containing protein n=1 Tax=Chil... [more]
UPI001E1D5C073.230e-522.75piggyBac transposable element-derived protein 4-li... [more]
UPI000B93568B5.270e-524.18piggyBac transposable element-derived protein 4-li... [more]
A0A6G0VSW8_APHCR5.930e-524.18PiggyBac transposable element-derived protein 4-li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110223contigM-pyrifera_M_contig110223:9..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue4.8e-12
Seed eggNOG ortholog6500.XP_005091401.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PiggyBac transposable element-derived protein
EggNOG OGs2CXJS@1,2RY1K@2759,39VGM@33154,3BJCI@33208,3CWQ6@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.5175443-CDS-M-pyrifera_M_contig110223:8..5991622815613.5175443-CDS-M-pyrifera_M_contig110223:8..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110223 9..599 +
1692277487.7787519-CDS-M-pyrifera_M_contig110223:8..5991692277487.7787519-CDS-M-pyrifera_M_contig110223:8..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110223 9..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110223.2141.1prot_M-pyrifera_M_contig110223.2141.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110223 9..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110223.2141.1

>prot_M-pyrifera_M_contig110223.2141.1 ID=prot_M-pyrifera_M_contig110223.2141.1|Name=mRNA_M-pyrifera_M_contig110223.2141.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
VGLWFLVHFGNVPLASFWEKEPLARAASASNIGSEVRRWEWKLVSRVLHI
SKRSEDMEHPEDNFIKVRPMIDLLLRNCMANFDPGCSVAYDEATVGYSRR
TNLLVRTKHKKVPSKVQAWCMCDSETAYVWWFEFCKDSLAYKADEPGLSK
TQAALYRVSQTLVSGNWHIIFLDNHFTSSKMARLLLGEKCLIVGTWR
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mRNA from alignment at M-pyrifera_M_contig110223:9..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110223.2141.1 ID=mRNA_M-pyrifera_M_contig110223.2141.1|Name=mRNA_M-pyrifera_M_contig110223.2141.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig110223:9..599+ (Macrocystis pyrifera P11B4 male)
GTTGGCCTTTGGTTCTTGGTACACTTCGGTAACGTTCCTTTGGCTTCTTT CTGGGAAAAGGAGCCACTGGCGCGTGCCGCCAGTGCCTCCAACATCGGGA GTGAGGTGAGGAGGTGGGAGTGGAAACTCGTGAGCCGCGTACTGCATATT TCGAAGAGGAGTGAGGACATGGAGCACCCTGAGGACAATTTCATCAAGGT CAGGCCCATGATTGACCTCCTGCTACGGAATTGCATGGCCAACTTCGATC CAGGCTGCAGTGTTGCTTACGATGAGGCCACGGTCGGCTACAGTCGACGC ACAAATTTGCTCGTGAGGACGAAGCACAAGAAGGTGCCCTCAAAAGTGCA AGCCTGGTGCATGTGTGACTCGGAGACTGCATACGTGTGGTGGTTCGAGT TCTGCAAGGACTCGCTCGCGTACAAGGCCGACGAGCCAGGCCTCTCGAAG ACCCAGGCTGCCCTCTATAGGGTGTCACAGACTTTGGTGTCTGGAAACTG GCACATCATCTTCCTGGACAACCACTTCACATCTTCAAAGATGGCGAGGC TGCTCCTCGGAGAGAAGTGCCTCATTGTGGGAACATGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110223:9..599+

>mRNA_M-pyrifera_M_contig110223.2141.1 ID=mRNA_M-pyrifera_M_contig110223.2141.1|Name=mRNA_M-pyrifera_M_contig110223.2141.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig110223:9..599+ (Macrocystis pyrifera P11B4 male)
GTTGGCCTTTGGTTCTTGGTACACTTCGGTAACGTTCCTTTGGCTTCTTT
CTGGGAAAAGGAGCCACTGGCGCGTGCCGCCAGTGCCTCCAACATCGGGA
GTGAGGTGAGGAGGTGGGAGTGGAAACTCGTGAGCCGCGTACTGCATATT
TCGAAGAGGAGTGAGGACATGGAGCACCCTGAGGACAATTTCATCAAGGT
CAGGCCCATGATTGACCTCCTGCTACGGAATTGCATGGCCAACTTCGATC
CAGGCTGCAGTGTTGCTTACGATGAGGCCACGGTCGGCTACAGTCGACGC
ACAAATTTGCTCGTGAGGACGAAGCACAAGAAGGTGCCCTCAAAAGTGCA
AGCCTGGTGCATGTGTGACTCGGAGACTGCATACGTGTGGTGGTTCGAGT
TCTGCAAGGACTCGCTCGCGTACAAGGCCGACGAGCCAGGCCTCTCGAAG
ACCCAGGCTGCCCTCTATAGGGTGTCACAGACTTTGGTGTCTGGAAACTG
GCACATCATCTTCCTGGACAACCACTTCACATCTTCAAAGATGGCGAGGC
TGCTCCTCGGAGAGAAGTGCCTCATTGTGGGAACATGGAGGGTTGGCCTT
TGGTTCTTGGTACACTTCGGTAACGTTCCTTTGGCTTCTTTCTGGGAAAA
GGAGCCACTGGCGCGTGCCGCCAGTGCCTCCAACATCGGGAGTGAGGTGA
GGAGGTGGGAGTGGAAACTCGTGAGCCGCGTACTGCATATTTCGAAGAGG
AGTGAGGACATGGAGCACCCTGAGGACAATTTCATCAAGGTCAGGCCCAT
GATTGACCTCCTGCTACGGAATTGCATGGCCAACTTCGATCCAGGCTGCA
GTGTTGCTTACGATGAGGCCACGGTCGGCTACAGTCGACGCACAAATTTG
CTCGTGAGGACGAAGCACAAGAAGGTGCCCTCAAAAGTGCAAGCCTGGTG
CATGTGTGACTCGGAGACTGCATACGTGTGGTGGTTCGAGTTCTGCAAGG
ACTCGCTCGCGTACAAGGCCGACGAGCCAGGCCTCTCGAAGACCCAGGCT
GCCCTCTATAGGGTGTCACAGACTTTGGTGTCTGGAAACTGGCACATCAT
CTTCCTGGACAACCACTTCACATCTTCAAAGATGGCGAGGCTGCTCCTCG
GAGAGAAGTGCCTCATTGTGGGAACATGGAGG
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