prot_M-pyrifera_M_contig110211.2136.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110211.2136.1
Unique Nameprot_M-pyrifera_M_contig110211.2136.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length192
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110211.2136.1 vs. uniprot
Match: A0A7S4I8D7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8D7_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.220e-18
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 0 
Query:   13 QLTKVKTVHLKENLLSQFPQELASVPTLEYVSLESNQISFVSEEVLDHFTTKXXXXXXXXXXXXXXXXXSEFFTRFQNLRSLELHDNRISKLPDLSGFSELTVLDIGGNALSAIPDEVIGM 133
            +L  V +V+L +N+L++ P  L +   L+ +S+  N I F++E+ LD FT +                 S++  RF+ L+ L+LH N +S LPDLSGFSEL  LDIGGN ++ IP E+  M
Sbjct:  569 ELIHVTSVNLSDNILNKIPLSLIAATNLKSLSISGNLIPFIAEDYLDEFTKRISGLETLDLNCNQIIELSDYICRFKQLQRLKLHGNLLSALPDLSGFSELVELDIGGNQVNVIPSEIFCM 689
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110211.2136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4I8D7_9EUKA1.220e-1838.84Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 110..133
e-value: 7.5
score: 14.3
coord: 14..36
e-value: 190.0
score: 2.7
coord: 65..87
e-value: 360.0
score: 0.5
coord: 88..109
e-value: 24.0
score: 10.2
coord: 156..178
e-value: 6.9
score: 14.6
coord: 37..60
e-value: 21.0
score: 10.6
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 88..107
e-value: 35.0
score: 9.6
coord: 110..129
e-value: 580.0
score: 0.2
coord: 156..175
e-value: 140.0
score: 4.9
coord: 65..84
e-value: 24.0
score: 10.8
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 65..192
coord: 11..106
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 6..192
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 66..123
e-value: 1.8E-7
score: 30.8
coord: 135..192
e-value: 5.8E-10
score: 38.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 112..133
score: 5.556
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..156
score: 4.947
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 67..88
score: 5.471
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 90..111
score: 9.129
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 181..192
score: 5.833
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 158..179
score: 6.064
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 39..60
score: 4.971
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..83
e-value: 4.7E-11
score: 44.2
coord: 84..192
e-value: 2.1E-30
score: 107.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110211contigM-pyrifera_M_contig110211:11..586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110211.2136.1mRNA_M-pyrifera_M_contig110211.2136.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110211 8..586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110211.2136.1 ID=prot_M-pyrifera_M_contig110211.2136.1|Name=mRNA_M-pyrifera_M_contig110211.2136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MRMPYIPPGFLPQLTKVKTVHLKENLLSQFPQELASVPTLEYVSLESNQI
SFVSEEVLDHFTTKVPTLSGINLNGNQLTEVSEFFTRFQNLRSLELHDNR
ISKLPDLSGFSELTVLDIGGNALSAIPDEVIGMQKLERLNVAASNIGSLP
EDICRLPCLVSLDVSQNNIQTFPAVFASLTHLVELDISNNKL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf