mRNA_M-pyrifera_M_contig110211.2136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110211.2136.1
Unique NamemRNA_M-pyrifera_M_contig110211.2136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110211.2136.1 vs. uniprot
Match: A0A7S4I8D7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8D7_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.250e-18
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:   40 QLTKVKTVHLKENLLSQFPQELASVPTLEYVSLESNQISFVSEEVLDHFTTKXXXXXXXXXXXXXXXXXSEFFTRFQNLRSLELHDNRISKLPDLSGFSELTVLDIGGNALSAIPDEVIGM 402
            +L  V +V+L +N+L++ P  L +   L+ +S+  N I F++E+ LD FT +                 S++  RF+ L+ L+LH N +S LPDLSGFSEL  LDIGGN ++ IP E+  M
Sbjct:  569 ELIHVTSVNLSDNILNKIPLSLIAATNLKSLSISGNLIPFIAEDYLDEFTKRISGLETLDLNCNQIIELSDYICRFKQLQRLKLHGNLLSALPDLSGFSELVELDIGGNQVNVIPSEIFCM 689
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110211.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4I8D7_9EUKA1.250e-1838.84Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110211contigM-pyrifera_M_contig110211:8..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.3007507-UTR-M-pyrifera_M_contig110211:7..101622815613.3007507-UTR-M-pyrifera_M_contig110211:7..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110211 8..10 +
1692277487.6855366-UTR-M-pyrifera_M_contig110211:7..101692277487.6855366-UTR-M-pyrifera_M_contig110211:7..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110211 8..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.3110547-CDS-M-pyrifera_M_contig110211:10..5861622815613.3110547-CDS-M-pyrifera_M_contig110211:10..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110211 11..586 +
1692277487.6980317-CDS-M-pyrifera_M_contig110211:10..5861692277487.6980317-CDS-M-pyrifera_M_contig110211:10..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110211 11..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110211.2136.1prot_M-pyrifera_M_contig110211.2136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110211 11..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110211.2136.1

>prot_M-pyrifera_M_contig110211.2136.1 ID=prot_M-pyrifera_M_contig110211.2136.1|Name=mRNA_M-pyrifera_M_contig110211.2136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MRMPYIPPGFLPQLTKVKTVHLKENLLSQFPQELASVPTLEYVSLESNQI
SFVSEEVLDHFTTKVPTLSGINLNGNQLTEVSEFFTRFQNLRSLELHDNR
ISKLPDLSGFSELTVLDIGGNALSAIPDEVIGMQKLERLNVAASNIGSLP
EDICRLPCLVSLDVSQNNIQTFPAVFASLTHLVELDISNNKL
back to top

mRNA from alignment at M-pyrifera_M_contig110211:8..586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110211.2136.1 ID=mRNA_M-pyrifera_M_contig110211.2136.1|Name=mRNA_M-pyrifera_M_contig110211.2136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig110211:8..586+ (Macrocystis pyrifera P11B4 male)
TGCATGCGAATGCCCTATATTCCCCCGGGATTTCTCCCTCAGCTCACCAA
GGTGAAGACGGTGCACTTGAAGGAGAATCTCTTGAGCCAGTTCCCTCAGG
AGCTCGCCTCGGTGCCTACCCTCGAATACGTGAGCTTGGAGTCGAACCAG
ATCTCCTTCGTGTCAGAGGAGGTGCTGGACCACTTCACCACCAAGGTGCC
CACCCTCAGTGGGATCAACCTCAACGGCAATCAGCTCACCGAGGTATCTG
AGTTTTTCACTCGGTTCCAGAACCTCCGCTCGCTCGAGCTGCACGACAAC
AGGATCAGCAAGTTGCCCGACCTCTCTGGCTTCTCTGAGCTCACTGTTCT
CGACATTGGTGGCAACGCCCTCTCTGCCATCCCCGACGAGGTGATCGGCA
TGCAGAAGCTCGAGAGGCTCAACGTGGCCGCCTCCAACATTGGCAGCCTG
CCAGAAGACATCTGCCGTCTGCCCTGTCTTGTCTCCCTGGACGTTTCGCA
GAACAATATCCAGACCTTCCCGGCGGTCTTCGCCTCGCTGACCCACTTGG
TTGAGCTGGACATCTCCAACAACAAGCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110211:8..586+

>mRNA_M-pyrifera_M_contig110211.2136.1 ID=mRNA_M-pyrifera_M_contig110211.2136.1|Name=mRNA_M-pyrifera_M_contig110211.2136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig110211:8..586+ (Macrocystis pyrifera P11B4 male)
ATGCGAATGCCCTATATTCCCCCGGGATTTCTCCCTCAGCTCACCAAGGT
GAAGACGGTGCACTTGAAGGAGAATCTCTTGAGCCAGTTCCCTCAGGAGC
TCGCCTCGGTGCCTACCCTCGAATACGTGAGCTTGGAGTCGAACCAGATC
TCCTTCGTGTCAGAGGAGGTGCTGGACCACTTCACCACCAAGGTGCCCAC
CCTCAGTGGGATCAACCTCAACGGCAATCAGCTCACCGAGGTATCTGAGT
TTTTCACTCGGTTCCAGAACCTCCGCTCGCTCGAGCTGCACGACAACAGG
ATCAGCAAGTTGCCCGACCTCTCTGGCTTCTCTGAGCTCACTGTTCTCGA
CATTGGTGGCAACGCCCTCTCTGCCATCCCCGACGAGGTGATCGGCATGC
AGAAGCTCGAGAGGCTCAACGTGGCCGCCTCCAACATTGGCAGCCTGCCA
GAAGACATCTGCCGTCTGCCCTGTCTTGTCTCCCTGGACGTTTCGCAGAA
CAATATCCAGACCTTCCCGGCGGTCTTCGCCTCGCTGACCCACTTGGTTG
AGCTGGACATCTCCAACAACAAGCTGATGCGAATGCCCTATATTCCCCCG
GGATTTCTCCCTCAGCTCACCAAGGTGAAGACGGTGCACTTGAAGGAGAA
TCTCTTGAGCCAGTTCCCTCAGGAGCTCGCCTCGGTGCCTACCCTCGAAT
ACGTGAGCTTGGAGTCGAACCAGATCTCCTTCGTGTCAGAGGAGGTGCTG
GACCACTTCACCACCAAGGTGCCCACCCTCAGTGGGATCAACCTCAACGG
CAATCAGCTCACCGAGGTATCTGAGTTTTTCACTCGGTTCCAGAACCTCC
GCTCGCTCGAGCTGCACGACAACAGGATCAGCAAGTTGCCCGACCTCTCT
GGCTTCTCTGAGCTCACTGTTCTCGACATTGGTGGCAACGCCCTCTCTGC
CATCCCCGACGAGGTGATCGGCATGCAGAAGCTCGAGAGGCTCAACGTGG
CCGCCTCCAACATTGGCAGCCTGCCAGAAGACATCTGCCGTCTGCCCTGT
CTTGTCTCCCTGGACGTTTCGCAGAACAATATCCAGACCTTCCCGGCGGT
CTTCGCCTCGCTGACCCACTTGGTTGAGCTGGACATCTCCAACAACAAGC
TG
back to top