mRNA_M-pyrifera_M_contig110200.2131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110200.2131.1
Unique NamemRNA_M-pyrifera_M_contig110200.2131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: D6WVF6_TRICA (Glutathione S-transferase D6-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WVF6_TRICA)

HSP 1 Score: 79.3 bits (194), Expect = 1.920e-15
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    7 RSKVDMYLDWHHTNTRAGCAGFLFSTWLLPM-RGKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRM--EQLSHLLQVNGVLNKVAAK 387
            +++VD YL+W H NTRA CA +    WL P+  G+        K E  + A    I +++LA +P+L GDR ++AD+ A  EI Q  V   G+      P L++WM+R+  E      + + VLNK+A K
Sbjct:   93 QARVDEYLEWQHNNTRAFCALYFQRKWLFPLLTGRQTSPETMQKYEDNMLACLDQIENIWLADTPYLCGDRISVADIFAACEIEQPRVA--GFDPIKGRPVLSAWMNRVRSEASPFYEEAHAVLNKLAEK 220          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: UPI0018D9E05D (glutathione S-transferase theta-1-like isoform X1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9E05D)

HSP 1 Score: 76.6 bits (187), Expect = 2.160e-14
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPMR-GKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRME-QLS-HLLQVNGVLNKVAAK 387
            Q RSKV  Y+ W H NTR  CA       +LP   G P DE    +   T+  +   + DVFL  +P+L GD+ +IADLL   E++Q  V   G   +  +P+L +W++R++  LS H  +V  +LN+V  K
Sbjct:   90 QARSKVREYMAWQHMNTRMHCATVFIHEVILPRATGTPPDEDELKQHVNTMHTTLTAMEDVFLKDTPYLCGDKISIADLLGICEVLQ--VTASGRNVTAGHPKLAAWIERVKADLSPHFNEVFVLLNRVRDK 219          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: Q22UB6_TETTS (Glutathione S-transferase, amine-terminal domain protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22UB6_TETTS)

HSP 1 Score: 75.5 bits (184), Expect = 5.200e-14
Identity = 41/131 (31.30%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPMRGKPVDEYARDKSERTIAASFKTICDVFLAS-SPFLAG-DRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQLSHLLQVNGVLNKVAAK 387
            + ++K+DMYLDWHH+NTR   A ++ ++ L    G+P   Y  D   + +  + + + D  L + S ++ G  +PTIAD+  YQE+ +L ++N  ++   KYP L+++M++M  +  + +V+   + +A K
Sbjct:   91 EDKTKIDMYLDWHHSNTRRS-ANYVTASLLSKRTGQP-SLYVEDLVHKELLKAVQNLNDNLLNNPSHYIFGFQKPTIADISCYQELTELKLINFDFK---KYPNLDAFMNQMSNIPEIKEVDKDFSDIALK 216          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: UPI00074FB27B (glutathione S-transferase theta-1-like n=2 Tax=Gekkota TaxID=8560 RepID=UPI00074FB27B)

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-13
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPM-RGKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQ 336
            QKR+KVD YL WH TN R+     ++   L+P+  G+P+      +    +A S K + DVFL   PFLAGD+ ++ADL+A  E++Q   V  G       P++ +W  R+E+
Sbjct:  104 QKRAKVDEYLSWHQTNIRSNAPKTMWIKVLIPLFTGQPLPSEKLQEVMEGLATSLKQLEDVFLQDKPFLAGDKISLADLMAIVELMQ--PVGVGCNIFEDRPRIAAWHRRVEE 214          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: A0A553PS45_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PS45_TIGCA)

HSP 1 Score: 74.3 bits (181), Expect = 1.590e-13
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPM-RGKPVDEYARDKSERTIAASFKTICDVFL--ASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQLSH 345
            Q ++K+D YL W H NTRAGCA +  + WL+PM +  P DE   +    T+  +   +  V+L      +L GD  ++AD++   E+ Q  V   GY    K+P+L  +MDR+++  H
Sbjct:   91 QGQAKIDEYLHWQHLNTRAGCAMYFRTKWLMPMLKQSPADEAKVESRLMTMEEALAKVQSVWLDEGRKKYLVGDAVSVADIMLCCEMEQPLVA--GYDIRQKWPKLGEYMDRIKEDLH 206          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: UPI0018D70168 (glutathione S-transferase theta-1-like isoform X2 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D70168)

HSP 1 Score: 73.9 bits (180), Expect = 2.020e-13
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPMR-GKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQ--LSHLLQVNGVLNKV 378
            Q RSKV  Y+ W H NTR  CA       +LP   G P DE    +   T+  +   + DVFL  +P+L GD+ +IADLL   E+ Q  VV  G   +   P L +W DR++     H  +V+ +++K+
Sbjct:   90 QARSKVREYMAWQHMNTRMHCATVFIHEVILPRATGTPPDEDELKQHVNTMHTTLTAMEDVFLKDTPYLCGDKISIADLLGICEVEQ--VVASGRVVTAGRPTLQTWTDRVKTDLAPHFDEVHSLMHKL 216          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: UPI00053C83A4 (glutathione S-transferase T1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C83A4)

HSP 1 Score: 73.9 bits (180), Expect = 2.810e-13
Identity = 44/141 (31.21%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 KRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPMRGKPVDEYARDKSERTIAASFKTICDVFLASSP---FLAGDRPTIADLLAYQEIVQLAVVNHG--YRASGKYPQLNSWMDRMEQLS--HLLQVNGVLNKVAAKAVSRSR 405
            KR+K+   LDWHH+N RAG AG++ +T L P  G P++  A  ++E+ ++ S   +   +L  S     L+ ++P+IADL    E++QL V+      R  G Y ++  W++    ++  H  +V+ +L K A + + + R
Sbjct:   92 KRAKIHSVLDWHHSNLRAGAAGYVLNTVLAPSLGLPLNPRAAAEAEKLLSKSLSKLETFWLKGSNSKFLLSSNQPSIADLSLVCELMQLQVLEEKDRLRLLGPYEKVQKWIENTRNVTMPHFDEVHEILFK-AKERIQKQR 231          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: A0A482VKI7_9CUCU (Glutathione S-transferase theta-1 n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VKI7_9CUCU)

HSP 1 Score: 73.2 bits (178), Expect = 4.210e-13
Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPM-RGKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQ 336
            +++++VD YL+W H NTR  CA +    WL+PM  G+          E+ +      I +V+LA+SP+LAGD+ ++AD+    EI Q  +   G+ A+   P L++W++++ +
Sbjct:   89 RQQARVDEYLEWQHNNTRTFCALYFQKKWLVPMLTGEQPSPDRLKNLEKNLVQGLNEIENVWLANSPYLAGDQISVADIFGACEIEQPRIA--GFDAAEGRPVLSAWLEKVRK 199          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: B3VHS9_TIGJA (Glutathione S-transferase theta 1 n=1 Tax=Tigriopus japonicus TaxID=158387 RepID=B3VHS9_TIGJA)

HSP 1 Score: 72.4 bits (176), Expect = 8.460e-13
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    7 RSKVDMYLDWHHTNTRAGCAGFLFSTWLLPM-RGKPVDEYARDKSERTIAASFKTICDVFL--ASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQLSH 345
            ++++D YL W H NTRAGCA +  + WL+PM +  P DE   +   +T+  +   + +++L      +L GD  ++AD++   E+ Q  V   GY    K+P+L  +MDR+++  H
Sbjct:   93 QARIDEYLHWQHLNTRAGCAMYFRTKWLMPMLKQSPADEGKVEARLKTMEDALAKVQNIWLEDGKKKYLVGDAVSVADIMLCCEMEQPLVA--GYDVRQKWPKLGEYMDRVKKDLH 206          
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Match: A0A2P6N886_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N886_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-12
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 QKRSKVDMYLDWHHTNTRAGCAGFLFSTWLLPMRGKPVDEYARDKSERTIAASFKTICDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWMDRMEQLSHLLQVNGVLNKVAA--KAVSRSRL 408
            ++R+ +D YLDWHH  TR   A  +F+  + P +G  V       S   +  +  T+  V+L +  FL G +P++ADL A  E++QL ++   Y      P+L  W   M ++ H  +V  V  KV+A  +  +RS+L
Sbjct:   87 KRRAIIDQYLDWHHGGTRIA-AQMIFAKVMAPAQGINVSGDQLKTSIGKLEFALDTLEKVWLKNDEFLTGAKPSVADLSAVCELMQLEMIE--YDIFKNRPKLEKWYRSMSKVEHFQEVTAVFQKVSALFREKNRSKL 221          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110200.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D6WVF6_TRICA1.920e-1536.15Glutathione S-transferase D6-like Protein n=2 Tax=... [more]
UPI0018D9E05D2.160e-1437.12glutathione S-transferase theta-1-like isoform X1 ... [more]
Q22UB6_TETTS5.200e-1431.30Glutathione S-transferase, amine-terminal domain p... [more]
UPI00074FB27B1.200e-1337.17glutathione S-transferase theta-1-like n=2 Tax=Gek... [more]
A0A553PS45_TIGCA1.590e-1334.75Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI0018D701682.020e-1335.66glutathione S-transferase theta-1-like isoform X2 ... [more]
UPI00053C83A42.810e-1331.21glutathione S-transferase T1 n=1 Tax=Tarenaya hass... [more]
A0A482VKI7_9CUCU4.210e-1332.74Glutathione S-transferase theta-1 n=1 Tax=Asbolus ... [more]
B3VHS9_TIGJA8.460e-1332.76Glutathione S-transferase theta 1 n=1 Tax=Tigriopu... [more]
A0A2P6N886_9EUKA1.090e-1231.88Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110200contigM-pyrifera_M_contig110200:3..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue4.5e-14
Seed eggNOG ortholog5786.XP_003292609.1
Preferred nameGSTT1
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K10669,ko:K17906
KEGG TC1.A.12.2.2,1.A.12.3.2,9.A.15.1
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko04136,ko04138,ko04140,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map04136,map04138,map04140,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006518,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009404,GO:0009407,GO:0009605,GO:0009636,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010269,GO:0014070,GO:0016209,GO:0016491,GO:0016684,GO:0016740,GO:0016765,GO:0016787,GO:0016824,GO:0018900,GO:0019120,GO:0019748,GO:0031667,GO:0031974,GO:0031981,GO:0033197,GO:0033273,GO:0034097,GO:0034641,GO:0042221,GO:0042493,GO:0042579,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044272,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046677,GO:0047651,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0090304,GO:0097237,GO:0098754,GO:0098869,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901685,GO:1901687,GO:1901700,GO:1990748,GO:1990823,GO:1990830
EggNOG free text desc.Belongs to the GST superfamily
EggNOG OGsCOG0625@1,KOG0867@2759
EC2.5.1.18,2.7.1.160
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03016,ko03029,ko04131
Exons1
Model size411
Cds size390
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.8906841-UTR-M-pyrifera_M_contig110200:2..231622815612.8906841-UTR-M-pyrifera_M_contig110200:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110200 3..23 +
1692277487.3854625-UTR-M-pyrifera_M_contig110200:2..231692277487.3854625-UTR-M-pyrifera_M_contig110200:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110200 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.9036942-CDS-M-pyrifera_M_contig110200:23..4131622815612.9036942-CDS-M-pyrifera_M_contig110200:23..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110200 24..413 +
1692277487.3992777-CDS-M-pyrifera_M_contig110200:23..4131692277487.3992777-CDS-M-pyrifera_M_contig110200:23..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110200 24..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110200.2131.1prot_M-pyrifera_M_contig110200.2131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110200 24..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110200.2131.1

>prot_M-pyrifera_M_contig110200.2131.1 ID=prot_M-pyrifera_M_contig110200.2131.1|Name=mRNA_M-pyrifera_M_contig110200.2131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MYLDWHHTNTRAGCAGFLFSTWLLPMRGKPVDEYARDKSERTIAASFKTI
CDVFLASSPFLAGDRPTIADLLAYQEIVQLAVVNHGYRASGKYPQLNSWM
DRMEQLSHLLQVNGVLNKVAAKAVSRSRL*
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mRNA from alignment at M-pyrifera_M_contig110200:3..413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110200.2131.1 ID=mRNA_M-pyrifera_M_contig110200.2131.1|Name=mRNA_M-pyrifera_M_contig110200.2131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig110200:3..413+ (Macrocystis pyrifera P11B4 male)
CAGAAGCGCTCCAAGGTAGACATGTACCTTGACTGGCACCACACCAACAC CAGGGCAGGCTGTGCTGGGTTTCTCTTCTCCACTTGGCTGCTGCCTATGA GAGGAAAGCCTGTGGACGAGTACGCGCGAGACAAGAGCGAGAGGACCATC GCTGCTTCGTTCAAGACTATCTGTGACGTCTTCCTCGCCAGCTCCCCTTT CCTCGCAGGCGACCGACCGACGATTGCGGATCTTCTGGCCTACCAAGAAA TTGTGCAGCTGGCAGTGGTCAACCACGGCTATCGCGCCAGTGGAAAGTAT CCACAGCTCAACAGCTGGATGGACAGGATGGAGCAGCTGAGTCATCTCCT CCAAGTCAACGGCGTGCTCAACAAGGTGGCAGCCAAGGCAGTCTCTCGCT CTCGACTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110200:3..413+

>mRNA_M-pyrifera_M_contig110200.2131.1 ID=mRNA_M-pyrifera_M_contig110200.2131.1|Name=mRNA_M-pyrifera_M_contig110200.2131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig110200:3..413+ (Macrocystis pyrifera P11B4 male)
ATGTACCTTGACTGGCACCACACCAACACCAGGGCAGGCTGTGCTGGGTT
TCTCTTCTCCACTTGGCTGCTGCCTATGAGAGGAAAGCCTGTGGACGAGT
ACGCGCGAGACAAGAGCGAGAGGACCATCGCTGCTTCGTTCAAGACTATC
TGTGACGTCTTCCTCGCCAGCTCCCCTTTCCTCGCAGGCGACCGACCGAC
GATTGCGGATCTTCTGGCCTACCAAGAAATTGTGCAGCTGGCAGTGGTCA
ACCACGGCTATCGCGCCAGTGGAAAGTATCCACAGCTCAACAGCTGGATG
GACAGGATGGAGCAGCTGAGTCATCTCCTCCAAGTCAACGGCGTGCTCAA
CAAGGTGGCAGCCAAGGCAGTCTCTCGCTCTCGACTGTAGATGTACCTTG
ACTGGCACCACACCAACACCAGGGCAGGCTGTGCTGGGTTTCTCTTCTCC
ACTTGGCTGCTGCCTATGAGAGGAAAGCCTGTGGACGAGTACGCGCGAGA
CAAGAGCGAGAGGACCATCGCTGCTTCGTTCAAGACTATCTGTGACGTCT
TCCTCGCCAGCTCCCCTTTCCTCGCAGGCGACCGACCGACGATTGCGGAT
CTTCTGGCCTACCAAGAAATTGTGCAGCTGGCAGTGGTCAACCACGGCTA
TCGCGCCAGTGGAAAGTATCCACAGCTCAACAGCTGGATGGACAGGATGG
AGCAGCTGAGTCATCTCCTCCAAGTCAACGGCGTGCTCAACAAGGTGGCA
GCCAAGGCAGTCTCTCGCTCTCGACTGTAG
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