mRNA_M-pyrifera_M_contig110198.2129.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110198.2129.1
Unique NamemRNA_M-pyrifera_M_contig110198.2129.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110198.2129.1 vs. uniprot
Match: LMPC_DICDI (Lysosome membrane protein 2-C n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=LMPC_DICDI)

HSP 1 Score: 68.2 bits (165), Expect = 8.360e-11
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 
Query:    1 LIRMTEVQYRGIDMWRFMISNGTFAVDPLYNNYVAGFANVTMFKYGSPIFFCNPHFAGVGEEYTSQVVGVAENQDWRVDWTVVDIEPTTGTVMHVNDSLQVNV----------FVNEPHWFNLYNPNVTT--GLFYP 375
            L+  +     G+   R+ + N +F +DP++NN + GFAN+T    G PI+       GV  EY+S  +    NQ +      +D+EP TG  ++ N  LQ+N+          F +  +W N+++P  +   G+FYP
Sbjct:  575 LVHSSSSSVMGVSTQRYYLPNQSFPIDPVFNNSINGFANLTGLFNGVPIYVSLWDMYGVPIEYSSLYIN-GLNQTYENAEIPLDLEPITGNTLYYNLKLQINLQIPSNANSLWFSSLGNWTNIFSPTNSNSFGIFYP 710
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BLAST of mRNA_M-pyrifera_M_contig110198.2129.1 vs. uniprot
Match: A0A0J7K7E0_LASNI (Protein croquemort-like protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7E0_LASNI)

HSP 1 Score: 50.8 bits (120), Expect = 8.420e-5
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:  103 AGFANVTMFKYGSPIFFCNPHFAGVGEEYTSQVVGVAENQDWRVDWTVVDIEPTTGTVMHVNDSLQVNVFVNEPHWFNLYN--PNV 354
            +G  N+T+ +YG+P+F   PHF        + V G+  N D    +++  +EPTTG  + V+ +LQ NV ++      LYN  PN+
Sbjct:  174 SGLLNITLCRYGAPVFISLPHFHKADPAVLNAVEGLRPN-DKEHSFSIT-LEPTTGIPLEVSAALQANVHLHSSEIVGLYNNVPNI 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110198.2129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
LMPC_DICDI8.360e-1129.93Lysosome membrane protein 2-C n=1 Tax=Dictyosteliu... [more]
A0A0J7K7E0_LASNI8.420e-533.72Protein croquemort-like protein (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110198contigM-pyrifera_M_contig110198:1..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog529818.AMSG_00595T0
KEGG koko:K12384
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000323,GO:0000910,GO:0003674,GO:0005488,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005767,GO:0005773,GO:0007049,GO:0008150,GO:0008289,GO:0009987,GO:0012506,GO:0016020,GO:0022402,GO:0030139,GO:0030587,GO:0031090,GO:0031410,GO:0031982,GO:0032009,GO:0032010,GO:0032502,GO:0035091,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044464,GO:0045335,GO:0048856,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0090702,GO:0097708,GO:0099120,GO:1901981,GO:1902936,GO:1903047
EggNOG free text desc.system process
EggNOG OGsKOG3776@1,KOG3776@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size381
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.8050866-UTR-M-pyrifera_M_contig110198:0..91622815612.8050866-UTR-M-pyrifera_M_contig110198:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110198 1..9 +
1692277487.3500383-UTR-M-pyrifera_M_contig110198:0..91692277487.3500383-UTR-M-pyrifera_M_contig110198:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110198 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.8183138-CDS-M-pyrifera_M_contig110198:9..3811622815612.8183138-CDS-M-pyrifera_M_contig110198:9..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110198 10..381 +
1692277487.3639104-CDS-M-pyrifera_M_contig110198:9..3811692277487.3639104-CDS-M-pyrifera_M_contig110198:9..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110198 10..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110198.2129.1prot_M-pyrifera_M_contig110198.2129.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110198 10..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110198.2129.1

>prot_M-pyrifera_M_contig110198.2129.1 ID=prot_M-pyrifera_M_contig110198.2129.1|Name=mRNA_M-pyrifera_M_contig110198.2129.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MTEVQYRGIDMWRFMISNGTFAVDPLYNNYVAGFANVTMFKYGSPIFFCN
PHFAGVGEEYTSQVVGVAENQDWRVDWTVVDIEPTTGTVMHVNDSLQVNV
FVNEPHWFNLYNPNVTTGLFYPLV
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mRNA from alignment at M-pyrifera_M_contig110198:1..381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110198.2129.1 ID=mRNA_M-pyrifera_M_contig110198.2129.1|Name=mRNA_M-pyrifera_M_contig110198.2129.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig110198:1..381+ (Macrocystis pyrifera P11B4 male)
TTGATTCGCATGACCGAGGTGCAGTACCGCGGCATCGACATGTGGCGGTT
CATGATCAGCAACGGAACGTTTGCCGTGGATCCTCTTTACAACAACTATG
TTGCTGGATTTGCCAACGTCACTATGTTCAAGTACGGCTCACCGATCTTC
TTCTGCAACCCTCACTTCGCGGGAGTTGGAGAAGAGTACACCAGCCAGGT
GGTCGGTGTGGCAGAGAACCAGGACTGGAGGGTCGACTGGACCGTTGTGG
ATATCGAGCCCACCACTGGAACTGTGATGCACGTGAACGACTCTCTGCAA
GTTAACGTCTTTGTGAACGAACCGCACTGGTTCAACCTCTATAACCCCAA
CGTTACAACTGGCCTCTTCTACCCATTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110198:1..381+

>mRNA_M-pyrifera_M_contig110198.2129.1 ID=mRNA_M-pyrifera_M_contig110198.2129.1|Name=mRNA_M-pyrifera_M_contig110198.2129.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig110198:1..381+ (Macrocystis pyrifera P11B4 male)
ATGACCGAGGTGCAGTACCGCGGCATCGACATGTGGCGGTTCATGATCAG
CAACGGAACGTTTGCCGTGGATCCTCTTTACAACAACTATGTTGCTGGAT
TTGCCAACGTCACTATGTTCAAGTACGGCTCACCGATCTTCTTCTGCAAC
CCTCACTTCGCGGGAGTTGGAGAAGAGTACACCAGCCAGGTGGTCGGTGT
GGCAGAGAACCAGGACTGGAGGGTCGACTGGACCGTTGTGGATATCGAGC
CCACCACTGGAACTGTGATGCACGTGAACGACTCTCTGCAAGTTAACGTC
TTTGTGAACGAACCGCACTGGTTCAACCTCTATAACCCCAACGTTACAAC
TGGCCTCTTCTACCCATTGGTGATGACCGAGGTGCAGTACCGCGGCATCG
ACATGTGGCGGTTCATGATCAGCAACGGAACGTTTGCCGTGGATCCTCTT
TACAACAACTATGTTGCTGGATTTGCCAACGTCACTATGTTCAAGTACGG
CTCACCGATCTTCTTCTGCAACCCTCACTTCGCGGGAGTTGGAGAAGAGT
ACACCAGCCAGGTGGTCGGTGTGGCAGAGAACCAGGACTGGAGGGTCGAC
TGGACCGTTGTGGATATCGAGCCCACCACTGGAACTGTGATGCACGTGAA
CGACTCTCTGCAAGTTAACGTCTTTGTGAACGAACCGCACTGGTTCAACC
TCTATAACCCCAACGTTACAACTGGCCTCTTCTACCCATTGGTG
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