mRNA_M-pyrifera_M_contig110120.2120.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110120.2120.1
Unique NamemRNA_M-pyrifera_M_contig110120.2120.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110120.2120.1 vs. uniprot
Match: A9VB89_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VB89_MONBE)

HSP 1 Score: 57.4 bits (137), Expect = 8.710e-8
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    4 WMTEEFMTAIGKDPVLSAGLADPHCLAAIDEYSKDAAGAAKKYGKDSKVNRFLQAFASAMGSHLETLGEKEE 219
            W+T + +      P L   + DP    A+ E+  D A A KKYG + +V +F + +   MGSH ETLGEKE+
Sbjct:  156 WLTPDLLQKFQSKPHLLKCMGDPTFQKALQEFQSDPATAKKKYGTNPEVAQFFKEYFEVMGSHFETLGEKED 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig110120.2120.1 vs. uniprot
Match: A0A812TK43_9DINO (Sti1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TK43_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 9.220e-8
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:    4 WMTEEFMTAIGKDPVLSAGLADPHCLAAIDEYSKDAAGAAKKYGKDSKVNRFLQAFASAMGSHLETLGEKEETSEEG 234
            WMT +    I  +P L AG+++P C+AA+ E+      A  KY  D  +  FL  F   MG H   LGE E+ S  G
Sbjct:  140 WMTPDLQQRIFSNPRLMAGMSNPKCMAALQEFQAKPEAAMAKYAADPLIRDFLTEFFGIMGDHFTKLGEAEKASSGG 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig110120.2120.1 vs. uniprot
Match: A0A7J7PFI3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFI3_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 2.670e-7
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   10 TEEFMTAIGKDPVLSAGLADPHCLAAIDEYSKDAAGAAKKYGKDSKVNRFLQAFASAMGSHLETLGEK 213
            T + ++A+G DPVL+AG  DP  ++A+ E ++D + A KKY  ++KV RF  AF   M   L+  G++
Sbjct:  130 TPDTISAVGSDPVLTAGFDDPEVMSAVAEVARDPS-AIKKYANNAKVQRFYMAFGKLMDGKLQAAGKQ 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110120.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A9VB89_MONBE8.710e-838.89Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A812TK43_9DINO9.220e-837.66Sti1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7J7PFI3_9CHLO2.670e-739.71Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110120contigM-pyrifera_M_contig110120:91..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size240
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.2715476-UTR-M-pyrifera_M_contig110120:90..961622815612.2715476-UTR-M-pyrifera_M_contig110120:90..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110120 91..96 +
1692277487.080044-UTR-M-pyrifera_M_contig110120:90..961692277487.080044-UTR-M-pyrifera_M_contig110120:90..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110120 91..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.281834-CDS-M-pyrifera_M_contig110120:96..3361622815612.281834-CDS-M-pyrifera_M_contig110120:96..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110120 97..336 +
1692277487.0917695-CDS-M-pyrifera_M_contig110120:96..3361692277487.0917695-CDS-M-pyrifera_M_contig110120:96..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110120 97..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110120.2120.1prot_M-pyrifera_M_contig110120.2120.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110120 97..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110120.2120.1

>prot_M-pyrifera_M_contig110120.2120.1 ID=prot_M-pyrifera_M_contig110120.2120.1|Name=mRNA_M-pyrifera_M_contig110120.2120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MTEEFMTAIGKDPVLSAGLADPHCLAAIDEYSKDAAGAAKKYGKDSKVNR
FLQAFASAMGSHLETLGEKEETSEEGSGSG
back to top

mRNA from alignment at M-pyrifera_M_contig110120:91..336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110120.2120.1 ID=mRNA_M-pyrifera_M_contig110120.2120.1|Name=mRNA_M-pyrifera_M_contig110120.2120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig110120:91..336+ (Macrocystis pyrifera P11B4 male)
GGTTGGATGACTGAGGAGTTTATGACAGCAATTGGGAAGGATCCTGTCTT
GTCTGCTGGATTAGCTGATCCACATTGTTTGGCTGCTATTGACGAGTATT
CCAAGGATGCTGCTGGTGCTGCAAAGAAATATGGGAAGGATTCAAAGGTA
AATCGCTTCTTGCAAGCATTTGCTAGTGCGATGGGATCTCATTTAGAGAC
ACTTGGAGAAAAGGAGGAAACGAGTGAGGAAGGAAGTGGTAGTGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110120:91..336+

>mRNA_M-pyrifera_M_contig110120.2120.1 ID=mRNA_M-pyrifera_M_contig110120.2120.1|Name=mRNA_M-pyrifera_M_contig110120.2120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig110120:91..336+ (Macrocystis pyrifera P11B4 male)
ATGACTGAGGAGTTTATGACAGCAATTGGGAAGGATCCTGTCTTGTCTGC
TGGATTAGCTGATCCACATTGTTTGGCTGCTATTGACGAGTATTCCAAGG
ATGCTGCTGGTGCTGCAAAGAAATATGGGAAGGATTCAAAGGTAAATCGC
TTCTTGCAAGCATTTGCTAGTGCGATGGGATCTCATTTAGAGACACTTGG
AGAAAAGGAGGAAACGAGTGAGGAAGGAAGTGGTAGTGGTATGACTGAGG
AGTTTATGACAGCAATTGGGAAGGATCCTGTCTTGTCTGCTGGATTAGCT
GATCCACATTGTTTGGCTGCTATTGACGAGTATTCCAAGGATGCTGCTGG
TGCTGCAAAGAAATATGGGAAGGATTCAAAGGTAAATCGCTTCTTGCAAG
CATTTGCTAGTGCGATGGGATCTCATTTAGAGACACTTGGAGAAAAGGAG
GAAACGAGTGAGGAAGGAAGTGGTAGTGGT
back to top