mRNA_M-pyrifera_M_contig110114.2116.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110114.2116.1
Unique NamemRNA_M-pyrifera_M_contig110114.2116.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110114.2116.1 vs. uniprot
Match: A0A2G2A8T9_9RHOB (Uncharacterized protein n=1 Tax=Thalassobium sp. TaxID=2030825 RepID=A0A2G2A8T9_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 9.290e-6
Identity = 53/205 (25.85%), Postives = 86/205 (41.95%), Query Frame = 1 
Query:    1 VNYLDNGTNLFY--PFLYPVNRLTNLFRPSGATSSQYGLTGGVRGVAEGLRFWNFWLGAEIEVNK----PFDLE--RSEYLKKAVSCNGKIFCSCFIPFMGKAI---SLRKLFPNSFFIFIDRDEEAIRKSMKRAYEENKASEWYSIYDSNIASTGSIAEKVDIQMELFSRLRK-SDLEIGNGYSEICYEDLVENASAVMTKIGQ 579
            V YL N  NL +  P    +       R      SQ+G   G+ G AEGLRFW +WLG  +        P D +  R  Y+ K +       C     ++G  +   +L   FP++ +I I RD  A   S+ R+  ++  + W+S+          + E   +  +++   R+  D E+      + YE L EN    + +I Q
Sbjct:   64 VLYLSNIWNLLFQLPLFGGIVSKVLTRRHCSEFLSQHGFVEGLDGPAEGLRFWEWWLGCGLSDESCRSMPADRKHRRVVYISKVLKVLTSQNCPFVSAYLGHTLVPDTLASSFPDAVYIRIRRDPIANALSLLRSTRQSGGT-WFSVVPQECKDEEGLNEHERVAAQVYWLNRRLDDSEVSRRSLTVHYEALCENPGRELDRIRQ 267
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110114.2116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G2A8T9_9RHOB9.290e-625.85Uncharacterized protein n=1 Tax=Thalassobium sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110114contigM-pyrifera_M_contig110114:22..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.9884412-CDS-M-pyrifera_M_contig110114:21..6001622815611.9884412-CDS-M-pyrifera_M_contig110114:21..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110114 22..600 +
1692277486.9516928-CDS-M-pyrifera_M_contig110114:21..6001692277486.9516928-CDS-M-pyrifera_M_contig110114:21..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110114 22..600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110114.2116.1prot_M-pyrifera_M_contig110114.2116.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110114 22..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110114.2116.1

>prot_M-pyrifera_M_contig110114.2116.1 ID=prot_M-pyrifera_M_contig110114.2116.1|Name=mRNA_M-pyrifera_M_contig110114.2116.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
VNYLDNGTNLFYPFLYPVNRLTNLFRPSGATSSQYGLTGGVRGVAEGLRF
WNFWLGAEIEVNKPFDLERSEYLKKAVSCNGKIFCSCFIPFMGKAISLRK
LFPNSFFIFIDRDEEAIRKSMKRAYEENKASEWYSIYDSNIASTGSIAEK
VDIQMELFSRLRKSDLEIGNGYSEICYEDLVENASAVMTKIGQ
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mRNA from alignment at M-pyrifera_M_contig110114:22..600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110114.2116.1 ID=mRNA_M-pyrifera_M_contig110114.2116.1|Name=mRNA_M-pyrifera_M_contig110114.2116.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig110114:22..600+ (Macrocystis pyrifera P11B4 male)
GTTAATTATTTAGATAACGGAACGAATTTGTTCTACCCTTTCCTCTATCC
CGTCAATCGGTTAACTAATCTTTTTAGACCTTCTGGAGCTACCAGCAGTC
AGTACGGACTTACTGGAGGTGTTCGTGGTGTAGCGGAGGGTCTAAGGTTT
TGGAATTTTTGGTTGGGAGCAGAAATTGAAGTAAACAAGCCGTTCGATTT
GGAGCGTTCAGAATACCTCAAAAAAGCAGTTAGTTGCAACGGGAAAATTT
TCTGTAGTTGCTTCATTCCATTTATGGGCAAGGCAATCTCCCTTCGAAAA
TTATTCCCAAATTCCTTTTTCATATTCATTGATCGCGATGAAGAAGCGAT
CAGAAAATCCATGAAAAGGGCATATGAAGAAAACAAGGCCAGCGAATGGT
ATTCGATTTACGATTCTAATATCGCATCTACAGGTTCAATAGCGGAAAAA
GTTGACATACAGATGGAACTGTTCTCCAGATTGAGAAAAAGTGATTTAGA
AATTGGAAATGGGTATTCGGAAATTTGCTATGAGGATCTTGTTGAAAACG
CTTCAGCTGTTATGACGAAAATCGGTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110114:22..600+

>mRNA_M-pyrifera_M_contig110114.2116.1 ID=mRNA_M-pyrifera_M_contig110114.2116.1|Name=mRNA_M-pyrifera_M_contig110114.2116.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig110114:22..600+ (Macrocystis pyrifera P11B4 male)
GTTAATTATTTAGATAACGGAACGAATTTGTTCTACCCTTTCCTCTATCC
CGTCAATCGGTTAACTAATCTTTTTAGACCTTCTGGAGCTACCAGCAGTC
AGTACGGACTTACTGGAGGTGTTCGTGGTGTAGCGGAGGGTCTAAGGTTT
TGGAATTTTTGGTTGGGAGCAGAAATTGAAGTAAACAAGCCGTTCGATTT
GGAGCGTTCAGAATACCTCAAAAAAGCAGTTAGTTGCAACGGGAAAATTT
TCTGTAGTTGCTTCATTCCATTTATGGGCAAGGCAATCTCCCTTCGAAAA
TTATTCCCAAATTCCTTTTTCATATTCATTGATCGCGATGAAGAAGCGAT
CAGAAAATCCATGAAAAGGGCATATGAAGAAAACAAGGCCAGCGAATGGT
ATTCGATTTACGATTCTAATATCGCATCTACAGGTTCAATAGCGGAAAAA
GTTGACATACAGATGGAACTGTTCTCCAGATTGAGAAAAAGTGATTTAGA
AATTGGAAATGGGTATTCGGAAATTTGCTATGAGGATCTTGTTGAAAACG
CTTCAGCTGTTATGACGAAAATCGGTCAGGTTAATTATTTAGATAACGGA
ACGAATTTGTTCTACCCTTTCCTCTATCCCGTCAATCGGTTAACTAATCT
TTTTAGACCTTCTGGAGCTACCAGCAGTCAGTACGGACTTACTGGAGGTG
TTCGTGGTGTAGCGGAGGGTCTAAGGTTTTGGAATTTTTGGTTGGGAGCA
GAAATTGAAGTAAACAAGCCGTTCGATTTGGAGCGTTCAGAATACCTCAA
AAAAGCAGTTAGTTGCAACGGGAAAATTTTCTGTAGTTGCTTCATTCCAT
TTATGGGCAAGGCAATCTCCCTTCGAAAATTATTCCCAAATTCCTTTTTC
ATATTCATTGATCGCGATGAAGAAGCGATCAGAAAATCCATGAAAAGGGC
ATATGAAGAAAACAAGGCCAGCGAATGGTATTCGATTTACGATTCTAATA
TCGCATCTACAGGTTCAATAGCGGAAAAAGTTGACATACAGATGGAACTG
TTCTCCAGATTGAGAAAAAGTGATTTAGAAATTGGAAATGGGTATTCGGA
AATTTGCTATGAGGATCTTGTTGAAAACGCTTCAGCTGTTATGACGAAAA
TCGGTCAG
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