mRNA_M-pyrifera_M_contig110111.2114.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110111.2114.1
Unique NamemRNA_M-pyrifera_M_contig110111.2114.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A8C6SL62_9GOBI (Dolichyl-phosphate-mannose--protein mannosyltransferase n=5 Tax=Gobiidae TaxID=8220 RepID=A0A8C6SL62_9GOBI)

HSP 1 Score: 91.3 bits (225), Expect = 1.220e-18
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK-----GSV---LWLVGSVLAGVLGVLCKE 375
            RPL  LSFR +  L G  P  +H+ N++++G   GL    F S++ L   L   G+W  SL   LLFAAHP+HTE VA V GRA+  A+ F L+SLL  +R CK     GS+    W VGS++     +LCKE
Sbjct:   66 RPLCTLSFRFNYALGGLDPSGYHLVNIILHGAVTGL----FTSLSRL---LLGGGLW--SLLAGLLFAAHPIHTEAVAGVVGRADEGAALFFLVSLLCYMRLCKLRGHAGSLRLLAWFVGSLVFAACSMLCKE 189          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A523J990_9DELT (PMT_2 domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523J990_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 3.810e-18
Identity = 57/141 (40.43%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK----GSVLWLVGSVLAGVLGVLCKETALVTPALMFII 411
            RPLT+LS+RL+  L G  PL+F V N+ ++ LTC L  +F   V AL        V        LLFA HP+HTE V  + GRAE LA+ F+L++L L +R       G   WL  +++A    +L KETA+V P L+ ++
Sbjct:    4 RPLTILSYRLNLRLLGQTPLSFRVVNIGLHALTCILLASF---VQALLRDRTLAAV------SALLFATHPIHTEAVTGIVGRAELLAALFLLLALNLHVRDYAVWGWGRERWLPLALVAFFAALLSKETAIVAPGLILLV 135          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: UPI0014725CE5 (protein O-mannosyl-transferase TMTC2 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014725CE5)

HSP 1 Score: 87.4 bits (215), Expect = 2.690e-17
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK-----GS---VLWLVGSVLAGVLGVLCKE 375
            RPL  LSFRL+R + G  P  +H+ NV+ +G   GL    F S+A L   L   G+W  ++   LLFA+HP+HTE VA V GRA+  A+ F L+SLL  +R CK     GS   + W +GS+      +L KE
Sbjct:   66 RPLCTLSFRLNRAMGGLEPWGYHLVNVIFHGAVTGL----FTSLARL---LLGGGLW--TVLAGLLFASHPIHTEAVAGVVGRADEGAALFFLLSLLCYIRHCKLRGHSGSWRPIAWFLGSLACAACSMLWKE 189          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: UPI001ED83618 (protein O-mannosyl-transferase TMTC2 n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED83618)

HSP 1 Score: 87.4 bits (215), Expect = 2.700e-17
Identity = 59/141 (41.84%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK--------GSVLWLVGSVLAGVLGVLCKETALVTPAL 399
            RPL  LSFRL+  + G  P  +H+ NV V+G   GL    F S+A L   L   G+W  SL   LLFA+HP+HTE VA V GRA+  A+ F L+SLL  +R CK          V W +GS+      +L KE  +   AL
Sbjct:   66 RPLCTLSFRLNHAVGGLEPWGYHLVNVAVHGAVTGL----FTSLARL---LLGGGLW--SLLAGLLFASHPIHTEAVAGVVGRADEGAALFFLLSLLCYIRHCKLRGHAGPWRLVAWFLGSLGCAACSMLWKELGITVLAL 197          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A8C3A6N4_CYCLU (Uncharacterized protein n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3A6N4_CYCLU)

HSP 1 Score: 85.5 bits (210), Expect = 2.970e-17
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK--------GSVLWLVGSVLAGVLGVLCKE 375
            RPL  LSFRL+  + G  P  +H+ NV ++G   GL    F S+A L   L   G+W  SL   LLFA+HP+HTE VA V GRA+  A+ F L+SLL  +R CK            W +GS++     +L KE
Sbjct:  105 RPLCTLSFRLNHAVGGLEPWGYHLVNVALHGAVTGL----FTSLARL---LLGGGLW--SLLAGLLFASHPIHTEAVAGVVGRADEGAALFFLLSLLCYMRHCKLRGHAAPWRLAAWFLGSLVCAACSMLWKE 228          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A8J4ZEG9_9CHEL (Transmembrane and TPR repeat-containing protein 4 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4ZEG9_9CHEL)

HSP 1 Score: 84.7 bits (208), Expect = 3.140e-17
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGA-GPLAFHVSNVVVYGLTCGLAGAFFASVAALH-----------HGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCKGS----VLWLVGSVLAGVLGVLCKE 375
            RPLT+LSFRL+  L G+  P  FH++N++++ L C L    FA+V +             +  +P      SL C +LFA HP+HTE VA V GRAE L +   ++S LL ++ C  S    VL  + S++  ++ +LCKE
Sbjct:   77 RPLTILSFRLNHWLHGSLEPHVFHLANIILHALVCVLVIPLFATVLSTSCKSRNFSFIDAYRCSPRA----SLLCAILFATHPIHTESVAGVVGRAELLCALCFVLSFLLYVKSCASSGVVAVLTFIFSIMFSLMSLLCKE 213          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A1V5ZS79_9BACT (Uncharacterized protein n=1 Tax=Candidatus Latescibacteria bacterium ADurb.Bin168 TaxID=1852850 RepID=A0A1V5ZS79_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 4.640e-17
Identity = 58/144 (40.28%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK-GSVLWLVGSVLAGVLGVLCKETALVTPALMFIILAAWGR 429
            RP  VL    +  LWG  P  +H+SN++VY LTC L     + V          G  F  L   LLFA HPLHT  VA ++GR +  AS F+L SLL  +R  K G   W+   + A +LG+  KE AL+TP L   + A W R
Sbjct:   76 RPFVVLFTTGEYLLWGTTPGGYHLSNLIVYSLTCSLVFLLVSEVV---------GSRFLGLATALLFAVHPLHTMNVAWISGRTDLFASFFILCSLLAFVRWSKSGKKSWIWAGLFAELLGLCSKEIALLTPLLA--VAAEWAR 208          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A3Q4MWE2_NEOBR (Dolichyl-phosphate-mannose--protein mannosyltransferase n=4 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4MWE2_NEOBR)

HSP 1 Score: 86.7 bits (213), Expect = 4.860e-17
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCK-----GS---VLWLVGSVLAGVLGVLCKE 375
            RPL  LSFRL+  + G  P  +H+ NVV++G   GL    F S+A L   L   G+W  SL   LLFA+HP+HTE VA V GRA+  A+ F L+SLL  +R C+     GS   V W +GS+      +L KE
Sbjct:   63 RPLCTLSFRLNHAVGGLEPWGYHLVNVVLHGAVTGL----FTSLARL---LLGGGLW--SLLAGLLFASHPIHTEAVAGVVGRADEGAALFFLLSLLCYIRHCRLRGRAGSWRLVAWFLGSLGCAACSMLWKE 186          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: UPI00200C5E4E (protein O-mannosyl-transferase TMTC1-like n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C5E4E)

HSP 1 Score: 86.7 bits (213), Expect = 5.000e-17
Identity = 56/127 (44.09%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGCKGS-VLWLVGSVLAGVLGVLCKET 378
            RPLT LSFRL+  L G  P  +H SNVV++ + C L      +VA L    A        L   LLFA HP+HTE VA + GRA+ LA    L SLLL  R  K    +WL  S++ G L +L KET
Sbjct:  103 RPLTTLSFRLNHVLSGLKPWWYHASNVVLHAICCALVARACVTVARLQRPFA--------LLAALLFAVHPVHTEAVAGIVGRADVLACILFLSSLLLYHRPAKNKKCVWL--SIMLGALSMLAKET 219          
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Match: A0A3Q2PZZ2_FUNHE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2PZZ2_FUNHE)

HSP 1 Score: 86.7 bits (213), Expect = 5.010e-17
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHGLAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCLRGC 309
            RPL  LSFRL+  L G  P  +H+SNV ++GL   L       V AL H L   G+W  SL   LLFA+HP+HTE VA V GRA+  A+ F L+SLL   R C
Sbjct:   66 RPLCTLSFRLNYALHGLRPWGYHLSNVALHGLVTAL-------VTALSHALLGRGLW--SLLAGLLFASHPVHTEAVAGVVGRADVGAALFFLLSLLCYARHC 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110111.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C6SL62_9GOBI1.220e-1843.61Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A523J990_9DELT3.810e-1840.43PMT_2 domain-containing protein (Fragment) n=1 Tax... [more]
UPI0014725CE52.690e-1742.11protein O-mannosyl-transferase TMTC2 n=1 Tax=Thala... [more]
UPI001ED836182.700e-1741.84protein O-mannosyl-transferase TMTC2 n=1 Tax=Scato... [more]
A0A8C3A6N4_CYCLU2.970e-1741.35Uncharacterized protein n=1 Tax=Cyclopterus lumpus... [more]
A0A8J4ZEG9_9CHEL3.140e-1737.59Transmembrane and TPR repeat-containing protein 4 ... [more]
A0A1V5ZS79_9BACT4.640e-1740.28Uncharacterized protein n=1 Tax=Candidatus Latesci... [more]
A0A3Q4MWE2_NEOBR4.860e-1743.61Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
UPI00200C5E4E5.000e-1744.09protein O-mannosyl-transferase TMTC1-like n=1 Tax=... [more]
A0A3Q2PZZ2_FUNHE5.010e-1748.54Dolichyl-phosphate-mannose--protein mannosyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110111contigM-pyrifera_M_contig110111:172..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.4
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog106582.XP_004568318.1
Preferred nametmtc2
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Transmembrane and tetratricopeptide repeat containing 2
EggNOG OGs38CY4@33154,3BDZ9@33208,3CW1H@33213,483Z1@7711,48YBZ@7742,49TUG@7898,COG0457@1,KOG1124@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.890778-CDS-M-pyrifera_M_contig110111:171..6001622815611.890778-CDS-M-pyrifera_M_contig110111:171..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110111 172..600 -
1692277486.9220493-CDS-M-pyrifera_M_contig110111:171..6001692277486.9220493-CDS-M-pyrifera_M_contig110111:171..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110111 172..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110111.2114.1prot_M-pyrifera_M_contig110111.2114.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110111 172..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110111.2114.1

>prot_M-pyrifera_M_contig110111.2114.1 ID=prot_M-pyrifera_M_contig110111.2114.1|Name=mRNA_M-pyrifera_M_contig110111.2114.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
RPLTVLSFRLDRELWGAGPLAFHVSNVVVYGLTCGLAGAFFASVAALHHG
LAPNGVWFRSLWCTLLFAAHPLHTEVVANVTGRAEPLASAFMLISLLLCL
RGCKGSVLWLVGSVLAGVLGVLCKETALVTPALMFIILAAWGR
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mRNA from alignment at M-pyrifera_M_contig110111:172..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110111.2114.1 ID=mRNA_M-pyrifera_M_contig110111.2114.1|Name=mRNA_M-pyrifera_M_contig110111.2114.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig110111:172..600- (Macrocystis pyrifera P11B4 male)
CGACCGCTGACAGTACTGTCGTTTCGTTTGGATCGGGAGCTCTGGGGAGC CGGACCTCTTGCATTCCATGTCTCTAACGTAGTGGTGTATGGGTTGACTT GTGGACTTGCTGGTGCATTTTTTGCATCAGTTGCGGCGTTGCACCATGGA CTGGCTCCCAATGGAGTGTGGTTTCGGTCTCTTTGGTGTACACTATTGTT TGCAGCCCATCCTCTGCACACCGAAGTCGTAGCAAACGTGACAGGGCGAG CGGAGCCACTTGCTTCAGCGTTTATGCTGATTTCTCTTCTCTTATGTTTG CGTGGATGTAAAGGGAGTGTGTTGTGGTTGGTTGGAAGTGTGCTTGCTGG AGTCTTAGGAGTGTTGTGTAAAGAAACTGCATTGGTAACCCCTGCGTTGA TGTTTATCATCTTAGCGGCATGGGGACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110111:172..600-

>mRNA_M-pyrifera_M_contig110111.2114.1 ID=mRNA_M-pyrifera_M_contig110111.2114.1|Name=mRNA_M-pyrifera_M_contig110111.2114.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig110111:172..600- (Macrocystis pyrifera P11B4 male)
CGACCGCTGACAGTACTGTCGTTTCGTTTGGATCGGGAGCTCTGGGGAGC
CGGACCTCTTGCATTCCATGTCTCTAACGTAGTGGTGTATGGGTTGACTT
GTGGACTTGCTGGTGCATTTTTTGCATCAGTTGCGGCGTTGCACCATGGA
CTGGCTCCCAATGGAGTGTGGTTTCGGTCTCTTTGGTGTACACTATTGTT
TGCAGCCCATCCTCTGCACACCGAAGTCGTAGCAAACGTGACAGGGCGAG
CGGAGCCACTTGCTTCAGCGTTTATGCTGATTTCTCTTCTCTTATGTTTG
CGTGGATGTAAAGGGAGTGTGTTGTGGTTGGTTGGAAGTGTGCTTGCTGG
AGTCTTAGGAGTGTTGTGTAAAGAAACTGCATTGGTAACCCCTGCGTTGA
TGTTTATCATCTTAGCGGCATGGGGACGTCGACCGCTGACAGTACTGTCG
TTTCGTTTGGATCGGGAGCTCTGGGGAGCCGGACCTCTTGCATTCCATGT
CTCTAACGTAGTGGTGTATGGGTTGACTTGTGGACTTGCTGGTGCATTTT
TTGCATCAGTTGCGGCGTTGCACCATGGACTGGCTCCCAATGGAGTGTGG
TTTCGGTCTCTTTGGTGTACACTATTGTTTGCAGCCCATCCTCTGCACAC
CGAAGTCGTAGCAAACGTGACAGGGCGAGCGGAGCCACTTGCTTCAGCGT
TTATGCTGATTTCTCTTCTCTTATGTTTGCGTGGATGTAAAGGGAGTGTG
TTGTGGTTGGTTGGAAGTGTGCTTGCTGGAGTCTTAGGAGTGTTGTGTAA
AGAAACTGCATTGGTAACCCCTGCGTTGATGTTTATCATCTTAGCGGCAT
GGGGACGT
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