mRNA_M-pyrifera_M_contig110107.2113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110107.2113.1
Unique NamemRNA_M-pyrifera_M_contig110107.2113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A5A8D7V1_CAFRO (CS domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8D7V1_CAFRO)

HSP 1 Score: 147 bits (370), Expect = 3.030e-40
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:   13 LGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKIS 414
            +GL+G +  VLDG    AV   +  WT+EDA +      GGR++TV L K Y M WW HV   EP++D++KVEPENS + DLD +T  TV KMMFD+RQKAMGKPTSDEL +Q +LE FMK HPEMDFS+AKIS
Sbjct:  233 VGLKGAAS-VLDGPLFAAVAVADCTWTIEDAPAS---AGGGRLVTVMLAKAYGMAWWPHVVTTEPKLDLSKVEPENSNLGDLDAETRKTVEKMMFDSRQKAMGKPTSDELERQRVLERFMKQHPEMDFSQAKIS 362
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A7S0L513_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L513_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 6.630e-40
Identity = 75/128 (58.59%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:   31 SGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKIS 414
            S  V+DG+  KA++ E++ W++ED  SGD+     R+LT+SL+KV QMEWW  V  G+PEI+  KVEPENSK+ DLD +T  TV KMM+D RQKA G PT+DE  KQ+ML++FM+ HPEMDFSKAKIS
Sbjct:  198 SDAVVDGELHKAIKMEDSTWSVEDNPSGDN-----RLLTLSLSKVNQMEWWTCVMVGDPEINTQKVEPENSKLSDLDGETRQTVEKMMYDQRQKAAGLPTADEQSKQDMLKKFMEQHPEMDFSKAKIS 320
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A7S2DLS8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DLS8_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 1.160e-39
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:   40 VLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            VL G+ P+ V+ E+  W++ED     D    GR+++++LTK+ QMEWW HV +GEPEI+  KVEPENSK+ DLD DT  TV KMM+D RQKA G PT+DE  KQ+ML++FM+ HPEMDFSKAKI
Sbjct:  226 VLKGEMPQTVKVEDCFWSIED-----DPKGAGRLVSITLTKMNQMEWWKHVLKGEPEINTQKVEPENSKLSDLDGDTRQTVEKMMYDQRQKAAGLPTADEQGKQDMLKKFMEQHPEMDFSKAKI 344
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A5N6NFZ7_9ASTR (CS domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFZ7_9ASTR)

HSP 1 Score: 141 bits (355), Expect = 1.650e-39
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKIS 414
            ++GL+G    +L+G+  KAV+ +++ W LED  +          +TV LTK  QMEWW ++ +GEPEID  KVEPENSK+ DLD +T +TV KMMFD RQK MGKPTSDE++KQ++L++FM  HPEMDFS+AKI+
Sbjct:   97 KVGLKGQPP-ILEGELYKAVKVDDSFWCLEDQNA----------ITVLLTKQDQMEWWKYLVKGEPEIDTQKVEPENSKLADLDPETRSTVEKMMFDQRQKQMGKPTSDEMQKQDILKKFMAEHPEMDFSRAKIN 220
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A4V0NTZ8_9TRYP (NudC1 protein (Fragment) n=1 Tax=Trypanosoma sp. TCC2186 TaxID=2291725 RepID=A0A4V0NTZ8_9TRYP)

HSP 1 Score: 143 bits (360), Expect = 2.670e-39
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            R+GL+G   ++ DG    AV+ EE++WT+ED          GR + V+LTK  QMEWW  +  G+PEID+ KV PENSK++DLD +T  TV KMM+D RQKAMG PTS+E +KQ+ML +FM AHPEMDFSKAKI
Sbjct:  183 RVGLKGKPAII-DGDMFSAVKAEESMWTIED----------GRTVVVTLTKQNQMEWWKTIITGDPEIDLQKVMPENSKLDDLDAETRQTVEKMMYDQRQKAMGLPTSEEQKKQDMLAKFMAAHPEMDFSKAKI 305
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A813BGZ5_9DINO (BOB1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BGZ5_9DINO)

HSP 1 Score: 138 bits (347), Expect = 6.390e-39
Identity = 74/134 (55.22%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            + GLRG   +V D    K V+ ++  WTLE +G+        R L + L K   MEWW  + EGEP ID +KVEPE+SK+EDLD +T  TV KMMFD RQK M KPTSDE+RKQEML+ FM  HPEMDFS+AKI
Sbjct:   44 KFGLRGQDPIV-DAPLAKPVKADDCYWTLESSGAS-------RTLDIYLQKANGMEWWNCIAEGEPTIDTSKVEPESSKLEDLDAETRKTVEKMMFDQRQKMMNKPTSDEMRKQEMLQRFMAQHPEMDFSQAKI 169
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A4P2TYK4_9TRYP (NudC1 protein (Fragment) n=1 Tax=Trypanosoma sp. TCC339 TaxID=1643766 RepID=A0A4P2TYK4_9TRYP)

HSP 1 Score: 141 bits (355), Expect = 1.490e-38
Identity = 75/134 (55.97%), Postives = 95/134 (70.90%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            R+G++G   ++ DG    AV+ EE++WT+ED          G+ + V+LTK  QMEWW  V  G+PEID+ KV PENSK++DLD DT  TV KMM+D RQKAMG PTS+E +K EML +FM AHPEMDFSKAKI
Sbjct:  183 RVGVKGKPAII-DGDLYSAVKAEESMWTIED----------GQTVVVTLTKQNQMEWWKTVIAGDPEIDLQKVVPENSKLDDLDLDTRQTVEKMMYDQRQKAMGLPTSEEQKKNEMLAKFMAAHPEMDFSKAKI 305
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A4V0NTZ7_9TRYP (NudC1 protein (Fragment) n=1 Tax=Trypanosoma wauwau TaxID=1775638 RepID=A0A4V0NTZ7_9TRYP)

HSP 1 Score: 140 bits (354), Expect = 1.820e-38
Identity = 73/134 (54.48%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            R+G++G +  +LDG    AV+ EE++WT+ED          G  + ++LTK+ QMEWW  V  G+PEID+ KV PENSK++DLD DT  TV KMM+D RQKAMG PTS+E +K++ML +FM AHPEMDFS+AKI
Sbjct:  177 RVGIKGKAP-ILDGDLYAAVKSEESMWTIED----------GSTVVITLTKMNQMEWWKTVIVGDPEIDLQKVVPENSKLDDLDSDTRQTVEKMMYDQRQKAMGLPTSEEQQKRDMLAKFMAAHPEMDFSQAKI 299
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BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: A0A067CPV9_SAPPC (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPV9_SAPPC)

HSP 1 Score: 140 bits (353), Expect = 3.320e-38
Identity = 73/135 (54.07%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKIS 414
            ++GL+G   L++DG+  K ++ E++ WTLED          G  + + L K  QMEWW +V +G+PEI+  KV+PENSK+ DLD DT  TV KMMFD RQK MG PTSDEL KQE+L++FM AHPEMDFSKAK++
Sbjct:  188 KVGLKGQP-LLVDGELHKRIKVEDSFWTLED----------GNRICIYLQKENQMEWWKNVIQGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMAAHPEMDFSKAKLN 311
[Close]
BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Match: G0TYQ3_TRYVY (CS domain-containing protein n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0TYQ3_TRYVY)

HSP 1 Score: 140 bits (352), Expect = 3.720e-38
Identity = 76/134 (56.72%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:   10 RLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTVSLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFDTRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKI 411
            R+GL+G S LV DG+   AV+ EE +WT+ED          G  + V+LTK  QMEWW  V  G+PEID+ KV PENSK++DLD +T  TV KMM+D RQKAMG PTS+E +K++ML +FM AHPEMDFS+AKI
Sbjct:  178 RVGLKGKSPLV-DGELFAAVKTEECMWTIED----------GVTVVVTLTKQNQMEWWKTVISGDPEIDLQKVVPENSKLDDLDGETRQTVEKMMYDQRQKAMGLPTSEEQKKRDMLAKFMAAHPEMDFSQAKI 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110107.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D7V1_CAFRO3.030e-4058.21CS domain-containing protein n=4 Tax=Sar TaxID=269... [more]
A0A7S0L513_9EUKA6.630e-4058.59Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2DLS8_9EUKA1.160e-3958.06Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A5N6NFZ7_9ASTR1.650e-3954.07CS domain-containing protein n=1 Tax=Mikania micra... [more]
A0A4V0NTZ8_9TRYP2.670e-3955.97NudC1 protein (Fragment) n=1 Tax=Trypanosoma sp. T... [more]
A0A813BGZ5_9DINO6.390e-3955.22BOB1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A4P2TYK4_9TRYP1.490e-3855.97NudC1 protein (Fragment) n=1 Tax=Trypanosoma sp. T... [more]
A0A4V0NTZ7_9TRYP1.820e-3854.48NudC1 protein (Fragment) n=1 Tax=Trypanosoma wauwa... [more]
A0A067CPV9_SAPPC3.320e-3854.07CS domain-containing protein n=2 Tax=Saprolegnia T... [more]
G0TYQ3_TRYVY3.720e-3856.72CS domain-containing protein n=1 Tax=Trypanosoma v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110107contigM-pyrifera_M_contig110107:138..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.3e-31
Seed eggNOG ortholog112098.XP_008614436.1
Preferred namenudc
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006457,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0016043,GO:0022402,GO:0030473,GO:0030705,GO:0031505,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046907,GO:0048285,GO:0051082,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0072384,GO:0098813,GO:0099111,GO:0140014,GO:1903047
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.8555863-CDS-M-pyrifera_M_contig110107:137..5541622815611.8555863-CDS-M-pyrifera_M_contig110107:137..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110107 138..554 -
1692277486.9082603-CDS-M-pyrifera_M_contig110107:137..5541692277486.9082603-CDS-M-pyrifera_M_contig110107:137..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110107 138..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110107.2113.1prot_M-pyrifera_M_contig110107.2113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110107 138..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110107.2113.1

>prot_M-pyrifera_M_contig110107.2113.1 ID=prot_M-pyrifera_M_contig110107.2113.1|Name=mRNA_M-pyrifera_M_contig110107.2113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MVNRLGLRGDSGLVLDGKFPKAVEEEETLWTLEDAGSGDDVGSGGRVLTV
SLTKVYQMEWWAHVCEGEPEIDVAKVEPENSKIEDLDDDTAATVRKMMFD
TRQKAMGKPTSDELRKQEMLEEFMKAHPEMDFSKAKIS*
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mRNA from alignment at M-pyrifera_M_contig110107:138..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110107.2113.1 ID=mRNA_M-pyrifera_M_contig110107.2113.1|Name=mRNA_M-pyrifera_M_contig110107.2113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig110107:138..554- (Macrocystis pyrifera P11B4 male)
ATGGTAAATAGGTTGGGTTTACGAGGAGACTCTGGATTGGTATTGGATGG
CAAGTTTCCAAAAGCGGTGGAGGAGGAGGAGACATTGTGGACGCTGGAGG
ATGCGGGGAGTGGGGATGACGTTGGGAGTGGGGGTAGAGTGTTGACAGTT
TCTTTGACCAAGGTGTACCAGATGGAGTGGTGGGCGCACGTGTGCGAAGG
AGAGCCAGAAATCGACGTGGCCAAAGTGGAGCCAGAAAACTCCAAGATTG
AAGACCTCGATGACGACACTGCAGCGACTGTGCGCAAAATGATGTTCGAC
ACCAGGCAAAAGGCCATGGGAAAGCCCACCAGTGACGAACTCAGGAAACA
GGAAATGCTCGAGGAGTTTATGAAAGCACACCCCGAAATGGACTTTTCCA
AAGCGAAAATCTCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110107:138..554-

>mRNA_M-pyrifera_M_contig110107.2113.1 ID=mRNA_M-pyrifera_M_contig110107.2113.1|Name=mRNA_M-pyrifera_M_contig110107.2113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig110107:138..554- (Macrocystis pyrifera P11B4 male)
ATGGTAAATAGGTTGGGTTTACGAGGAGACTCTGGATTGGTATTGGATGG
CAAGTTTCCAAAAGCGGTGGAGGAGGAGGAGACATTGTGGACGCTGGAGG
ATGCGGGGAGTGGGGATGACGTTGGGAGTGGGGGTAGAGTGTTGACAGTT
TCTTTGACCAAGGTGTACCAGATGGAGTGGTGGGCGCACGTGTGCGAAGG
AGAGCCAGAAATCGACGTGGCCAAAGTGGAGCCAGAAAACTCCAAGATTG
AAGACCTCGATGACGACACTGCAGCGACTGTGCGCAAAATGATGTTCGAC
ACCAGGCAAAAGGCCATGGGAAAGCCCACCAGTGACGAACTCAGGAAACA
GGAAATGCTCGAGGAGTTTATGAAAGCACACCCCGAAATGGACTTTTCCA
AAGCGAAAATCTCCTAGATGGTAAATAGGTTGGGTTTACGAGGAGACTCT
GGATTGGTATTGGATGGCAAGTTTCCAAAAGCGGTGGAGGAGGAGGAGAC
ATTGTGGACGCTGGAGGATGCGGGGAGTGGGGATGACGTTGGGAGTGGGG
GTAGAGTGTTGACAGTTTCTTTGACCAAGGTGTACCAGATGGAGTGGTGG
GCGCACGTGTGCGAAGGAGAGCCAGAAATCGACGTGGCCAAAGTGGAGCC
AGAAAACTCCAAGATTGAAGACCTCGATGACGACACTGCAGCGACTGTGC
GCAAAATGATGTTCGACACCAGGCAAAAGGCCATGGGAAAGCCCACCAGT
GACGAACTCAGGAAACAGGAAATGCTCGAGGAGTTTATGAAAGCACACCC
CGAAATGGACTTTTCCAAAGCGAAAATCTCCTAG
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