mRNA_M-pyrifera_M_contig110105.2112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110105.2112.1
Unique NamemRNA_M-pyrifera_M_contig110105.2112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Match: UPI001D1394FD (serine/threonine protein kinase n=1 Tax=Gimesia benthica TaxID=2608982 RepID=UPI001D1394FD)

HSP 1 Score: 279 bits (714), Expect = 1.910e-84
Identity = 143/188 (76.06%), Postives = 147/188 (78.19%), Query Frame = 1 
Query:    1 PGKTTGTWRLTEQQLNQPVQSMGGGGL---------------------------------VQASKPRAARTPYKTVVLFGKDPGMSIDLAPLKADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPKQGVGM 465
            PGK+TGTWRLTEQQLNQPVQSMGGGGL                                 VQASKPRAARTPYKTVVLFGKDPGMSIDLAPLKADSGTR MKRVQRGASTFEVTPGEYAV VSTQLVGWA NGRSARYVDSELNVKADQS+EKTLHY+F+KLA NH  W ADE FYFHWPNPKQGVGM
Sbjct: 1066 PGKSTGTWRLTEQQLNQPVQSMGGGGLGGGTFENNRTQSQQQQTSPEQKPGTQSSLGQQPVQASKPRAARTPYKTVVLFGKDPGMSIDLAPLKADSGTRIMKRVQRGASTFEVTPGEYAVTVSTQLVGWANNGRSARYVDSELNVKADQSIEKTLHYNFQKLAENHPIWKADERFYFHWPNPKQGVGM 1253
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BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Match: A0A517WEB4_9PLAN (Non-specific serine/threonine protein kinase n=6 Tax=cellular organisms TaxID=131567 RepID=A0A517WEB4_9PLAN)

HSP 1 Score: 268 bits (684), Expect = 3.080e-80
Identity = 141/199 (70.85%), Postives = 144/199 (72.36%), Query Frame = 1 
Query:    1 PGKTTGTWRLTEQQLNQPVQSMGGGGL--------------------------------------------VQASKPRAARTPYKTVVLFGKDPGMSIDLAPLKADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPKQGVGM 465
            PGK+TGTWRLTEQQLNQPVQSMGGGG                                             VQASKPR AR PYKTVVLFGKDPGMSIDLAPLK DSGTR MKRVQRGASTFEVT GEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHY+F+KLA NH  W ADEHFYF WPNPKQGVGM
Sbjct: 1180 PGKSTGTWRLTEQQLNQPVQSMGGGGFGGGVGSGLTDPFGGGTFENNRTQSQQQTSPEQKPGTLNPFSQQPVQASKPRGARNPYKTVVLFGKDPGMSIDLAPLKNDSGTRIMKRVQRGASTFEVTSGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYNFQKLAENHPVWKADEHFYFLWPNPKQGVGM 1378
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BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Match: A0A518A7S5_9PLAN (Non-specific serine/threonine protein kinase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7S5_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 3.930e-51
Identity = 92/155 (59.35%), Postives = 112/155 (72.26%), Query Frame = 1 
Query:   25 RLTEQQLNQPVQSMGGGGL-------VQASKPRAARTPYKTVVLFGKDPGMSIDLA-PLKADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPKQGVGM 465
            R+  +   Q  +  G G +       +QA KPR AR  Y  VV+FGKDPGM ID+A   K+D   R MKRVQRGASTF+VTPGEY + VSTQLVGWA NGR+A YVDS+L V A +++EKTLHY+F+KLA NH DW AD+HFYFHWP+P QG+GM
Sbjct: 1269 RIFSEVQQQKTEKPGAGSMPPVFQQPLQAKKPRPARL-YGEVVIFGKDPGMRIDIARKQKSDPNGRFMKRVQRGASTFDVTPGEYVIEVSTQLVGWALNGRAAHYVDSQLKVTAGETIEKTLHYNFQKLAENHPDWEADQHFYFHWPDPSQGIGM 1422
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BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Match: A0A2E2C2X8_9PLAN (Non-specific serine/threonine protein kinase n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C2X8_9PLAN)

HSP 1 Score: 157 bits (396), Expect = 1.920e-41
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:   82 VQASKPRAARTPYKTVVLFGKDPGMSIDLAPL-KADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPKQGVGM 465
            V+ASKPR AR  + TVVLFGKDPGM IDL    + +     MKR QRGASTF+V PG+Y + V+TQLVGWA NG++A YVDS+L VKA +++EKTL Y+F+KLA NH  W AD+ F+F WP+P QGVGM
Sbjct: 1255 VEASKPRPARK-FATVVLFGKDPGMRIDLVYRHELEPSGPMMKRFQRGASTFDVLPGDYYIEVTTQLVGWALNGQAAHYVDSKLKVKAGETLEKTLQYNFQKLAENHPIWKADQKFHFQWPDPSQGVGM 1382
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BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Match: A0A3C0AQP6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AQP6_9PLAN)

HSP 1 Score: 141 bits (356), Expect = 1.430e-39
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:  130 VLFGKDPGMSIDLAPL-KADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNGRSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPKQGVGM 465
            +LFGKDPGM IDL    + +     MKR QRGASTF+V PG+Y + V+TQLVGWA NG++A YVDS+L VKA +++EKTL Y+F+KLA NH  W AD+ F+F WP+P QGVGM
Sbjct:    1 MLFGKDPGMRIDLVYRHELEPSGPMMKRFQRGASTFDVLPGDYYIEVTTQLVGWALNGQAAHYVDSKLKVKAGETLEKTLQYNFQKLAENHPIWKADQKFHFQWPDPSQGVGM 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110105.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001D1394FD1.910e-8476.06serine/threonine protein kinase n=1 Tax=Gimesia be... [more]
A0A517WEB4_9PLAN3.080e-8070.85Non-specific serine/threonine protein kinase n=6 T... [more]
A0A518A7S5_9PLAN3.930e-5159.35Non-specific serine/threonine protein kinase n=3 T... [more]
A0A2E2C2X8_9PLAN1.920e-4161.24Non-specific serine/threonine protein kinase n=5 T... [more]
A0A3C0AQP6_9PLAN1.430e-3960.18Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110105contigM-pyrifera_M_contig110105:1..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score114.4
Seed ortholog evalue4.8e-23
Seed eggNOG ortholog344747.PM8797T_27372
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0515 Serine threonine protein
EggNOG OGs2IYF2@203682,COG0515@1,COG0515@2
COG Functional cat.KLT
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.7770061-CDS-M-pyrifera_M_contig110105:0..821622815611.7770061-CDS-M-pyrifera_M_contig110105:0..82Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110105 1..82 +
1692277486.88765-CDS-M-pyrifera_M_contig110105:0..821692277486.88765-CDS-M-pyrifera_M_contig110105:0..82Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110105 1..82 +
1622815611.7982411-CDS-M-pyrifera_M_contig110105:217..6001622815611.7982411-CDS-M-pyrifera_M_contig110105:217..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110105 218..600 +
1692277486.898568-CDS-M-pyrifera_M_contig110105:217..6001692277486.898568-CDS-M-pyrifera_M_contig110105:217..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110105 218..600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110105.2112.1prot_M-pyrifera_M_contig110105.2112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110105 1..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110105.2112.1

>prot_M-pyrifera_M_contig110105.2112.1 ID=prot_M-pyrifera_M_contig110105.2112.1|Name=mRNA_M-pyrifera_M_contig110105.2112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
PGKTTGTWRLTEQQLNQPVQSMGGGGLVQASKPRAARTPYKTVVLFGKDP
GMSIDLAPLKADSGTRTMKRVQRGASTFEVTPGEYAVIVSTQLVGWATNG
RSARYVDSELNVKADQSVEKTLHYDFKKLAANHRDWAADEHFYFHWPNPK
QGVGM
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mRNA from alignment at M-pyrifera_M_contig110105:1..600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110105.2112.1 ID=mRNA_M-pyrifera_M_contig110105.2112.1|Name=mRNA_M-pyrifera_M_contig110105.2112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig110105:1..600+ (Macrocystis pyrifera P11B4 male)
CCCGGCAAGACCACAGGGACCTGGCGGCTGACTGAACAGCAACTGAACCA
GCCTGTTCAGTCGATGGGCGGCGGTGGCTTGGGTGGCGGGTTCGGTAGCA
GTGTCACAAACCCGTTTGGTGGAGGCACTTTCGAAAACAATCGCACTCAG
TCTCAACAGCAGCAGACATCTCCAGAACAGAAACCGGGAACTCAGTCCTC
ACTCTTTCAACAACCAGTGCAGGCGTCAAAGCCACGTGCCGCGAGAACTC
CTTACAAAACGGTCGTCCTCTTCGGCAAAGATCCGGGCATGAGTATCGAT
CTGGCCCCACTCAAGGCCGATTCCGGTACGCGGACTATGAAACGCGTGCA
ACGCGGCGCGAGTACCTTCGAAGTGACGCCAGGGGAGTACGCTGTCATTG
TCAGCACGCAACTCGTCGGCTGGGCCACCAATGGACGGTCCGCACGCTAT
GTTGACTCAGAATTGAATGTGAAAGCTGATCAATCGGTCGAGAAAACGCT
GCACTACGATTTCAAAAAGCTGGCCGCGAATCATCGTGACTGGGCCGCTG
ACGAGCACTTCTACTTCCACTGGCCGAATCCCAAGCAAGGCGTCGGTATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110105:1..600+

>mRNA_M-pyrifera_M_contig110105.2112.1 ID=mRNA_M-pyrifera_M_contig110105.2112.1|Name=mRNA_M-pyrifera_M_contig110105.2112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig110105:1..600+ (Macrocystis pyrifera P11B4 male)
CCCGGCAAGACCACAGGGACCTGGCGGCTGACTGAACAGCAACTGAACCA
GCCTGTTCAGTCGATGGGCGGCGGTGGCTTGGCCCGGCAAGACCACAGGG
ACCTGGCGGCTGACTGAACAGCAACTGAACCAGCCTGTTCAGTCGATGGG
CGGCGGTGGCTTGGTGCAGGCGTCAAAGCCACGTGCCGCGAGAACTCCTT
ACAAAACGGTCGTCCTCTTCGGCAAAGATCCGGGCATGAGTATCGATCTG
GCCCCACTCAAGGCCGATTCCGGTACGCGGACTATGAAACGCGTGCAACG
CGGCGCGAGTACCTTCGAAGTGACGCCAGGGGAGTACGCTGTCATTGTCA
GCACGCAACTCGTCGGCTGGGCCACCAATGGACGGTCCGCACGCTATGTT
GACTCAGAATTGAATGTGAAAGCTGATCAATCGGTCGAGAAAACGCTGCA
CTACGATTTCAAAAAGCTGGCCGCGAATCATCGTGACTGGGCCGCTGACG
AGCACTTCTACTTCCACTGGCCGAATCCCAAGCAAGGCGTCGGTATGTGC
AGGCGTCAAAGCCACGTGCCGCGAGAACTCCTTACAAAACGGTCGTCCTC
TTCGGCAAAGATCCGGGCATGAGTATCGATCTGGCCCCACTCAAGGCCGA
TTCCGGTACGCGGACTATGAAACGCGTGCAACGCGGCGCGAGTACCTTCG
AAGTGACGCCAGGGGAGTACGCTGTCATTGTCAGCACGCAACTCGTCGGC
TGGGCCACCAATGGACGGTCCGCACGCTATGTTGACTCAGAATTGAATGT
GAAAGCTGATCAATCGGTCGAGAAAACGCTGCACTACGATTTCAAAAAGC
TGGCCGCGAATCATCGTGACTGGGCCGCTGACGAGCACTTCTACTTCCAC
TGGCCGAATCCCAAGCAAGGCGTCGGTATG
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