mRNA_M-pyrifera_M_contig110092.2111.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110092.2111.1
Unique NamemRNA_M-pyrifera_M_contig110092.2111.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110092.2111.1 vs. uniprot
Match: UPI001E4957AB (hypothetical protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E4957AB)

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-21
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:   61 QDNGVEPLV---SGYELMEILYEPYMDQLKEAVATEPEKRRGWQAIYKSSLALGELAALNLTRNDEDYMATPEWKEMTLASRTLNVDIAEAAKGKDFAGVTAKYQALVESCNACHTKFA 408
            Q N  EP       +E ME +Y+P   +LK A+A EP++   W+ I  +SL L E   L L+R  E+  A  EW E ++A+R L  D+  AAK KD+A  T  Y+A+++ CNACHTKFA
Sbjct:   21 QANAAEPKPVESDMHEFMEYVYQPTYKRLKPAMAAEPKENAVWKEIKSTSLILAESGNLLLSRAPEEGAA--EWNEYSIATRELGGDLYRAAKKKDYAAATTAYKAMLQKCNACHTKFA 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110092.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E4957AB1.900e-2142.86hypothetical protein n=1 Tax=unclassified Blastopi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110092contigM-pyrifera_M_contig110092:83..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog314230.DSM3645_10037
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EGPA@1,2J1H0@203682,33AFD@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.7293942-CDS-M-pyrifera_M_contig110092:82..5201622815611.7293942-CDS-M-pyrifera_M_contig110092:82..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110092 83..520 -
1692277486.8764842-CDS-M-pyrifera_M_contig110092:82..5201692277486.8764842-CDS-M-pyrifera_M_contig110092:82..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110092 83..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110092.2111.1prot_M-pyrifera_M_contig110092.2111.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110092 83..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110092.2111.1

>prot_M-pyrifera_M_contig110092.2111.1 ID=prot_M-pyrifera_M_contig110092.2111.1|Name=mRNA_M-pyrifera_M_contig110092.2111.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
LVFFVLAGVVIAAYSADVRAQDNGVEPLVSGYELMEILYEPYMDQLKEAV
ATEPEKRRGWQAIYKSSLALGELAALNLTRNDEDYMATPEWKEMTLASRT
LNVDIAEAAKGKDFAGVTAKYQALVESCNACHTKFAAEDAPTIEP*
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mRNA from alignment at M-pyrifera_M_contig110092:83..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110092.2111.1 ID=mRNA_M-pyrifera_M_contig110092.2111.1|Name=mRNA_M-pyrifera_M_contig110092.2111.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig110092:83..520- (Macrocystis pyrifera P11B4 male)
CTCGTATTTTTCGTATTGGCTGGCGTGGTGATCGCGGCGTATTCGGCGGA
TGTTCGTGCTCAGGATAACGGTGTCGAACCGCTTGTGAGCGGCTATGAGC
TCATGGAAATCTTGTATGAGCCGTACATGGATCAGCTCAAGGAAGCGGTG
GCCACTGAGCCAGAGAAGCGACGCGGATGGCAAGCGATCTATAAGAGTTC
GTTGGCGCTCGGTGAATTGGCTGCATTGAACTTGACGCGCAACGATGAGG
ATTACATGGCTACGCCGGAGTGGAAAGAGATGACGCTGGCTTCGCGCACG
CTAAATGTCGATATTGCGGAAGCGGCGAAGGGCAAGGATTTTGCTGGCGT
GACGGCGAAGTATCAGGCGTTGGTGGAATCGTGCAACGCGTGTCACACGA
AGTTTGCGGCGGAGGACGCGCCGACTATCGAACCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110092:83..520-

>mRNA_M-pyrifera_M_contig110092.2111.1 ID=mRNA_M-pyrifera_M_contig110092.2111.1|Name=mRNA_M-pyrifera_M_contig110092.2111.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig110092:83..520- (Macrocystis pyrifera P11B4 male)
CTCGTATTTTTCGTATTGGCTGGCGTGGTGATCGCGGCGTATTCGGCGGA
TGTTCGTGCTCAGGATAACGGTGTCGAACCGCTTGTGAGCGGCTATGAGC
TCATGGAAATCTTGTATGAGCCGTACATGGATCAGCTCAAGGAAGCGGTG
GCCACTGAGCCAGAGAAGCGACGCGGATGGCAAGCGATCTATAAGAGTTC
GTTGGCGCTCGGTGAATTGGCTGCATTGAACTTGACGCGCAACGATGAGG
ATTACATGGCTACGCCGGAGTGGAAAGAGATGACGCTGGCTTCGCGCACG
CTAAATGTCGATATTGCGGAAGCGGCGAAGGGCAAGGATTTTGCTGGCGT
GACGGCGAAGTATCAGGCGTTGGTGGAATCGTGCAACGCGTGTCACACGA
AGTTTGCGGCGGAGGACGCGCCGACTATCGAACCGTAGCTCGTATTTTTC
GTATTGGCTGGCGTGGTGATCGCGGCGTATTCGGCGGATGTTCGTGCTCA
GGATAACGGTGTCGAACCGCTTGTGAGCGGCTATGAGCTCATGGAAATCT
TGTATGAGCCGTACATGGATCAGCTCAAGGAAGCGGTGGCCACTGAGCCA
GAGAAGCGACGCGGATGGCAAGCGATCTATAAGAGTTCGTTGGCGCTCGG
TGAATTGGCTGCATTGAACTTGACGCGCAACGATGAGGATTACATGGCTA
CGCCGGAGTGGAAAGAGATGACGCTGGCTTCGCGCACGCTAAATGTCGAT
ATTGCGGAAGCGGCGAAGGGCAAGGATTTTGCTGGCGTGACGGCGAAGTA
TCAGGCGTTGGTGGAATCGTGCAACGCGTGTCACACGAAGTTTGCGGCGG
AGGACGCGCCGACTATCGAACCGTAG
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