mRNA_M-pyrifera_M_contig110088.2109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig110088.2109.1
Unique Name	mRNA_M-pyrifera_M_contig110088.2109.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A2E7KEJ0_9PLAN (FliMN_C domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEJ0_9PLAN)

HSP 1 Score: 104 bits (260), Expect = 4.510e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF
Sbjct:  252 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 299

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A6I6AAW8_9PLAN (FliMN_C domain-containing protein n=2 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AAW8_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 9.370e-26
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGF KEYKTKIIEF
Sbjct:  155 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFQKEYKTKIIEF 202

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A517ZZE4_9PLAN (Flagellar motor switch protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZE4_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 2.590e-25
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            K CEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF
Sbjct:  255 KPCEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 302

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A350KD65_9PLAN (FliMN_C domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KD65_9PLAN)

HSP 1 Score: 90.5 bits (223), Expect = 6.360e-23
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            K CEDPLE+YINNQVYCLGEAVKIGE+FGLKID+VGF +EY++KIIEF
Sbjct:   19 KPCEDPLELYINNQVYCLGEAVKIGEHFGLKIDRVGFKEEYESKIIEF 66

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A355GHH9_9PLAN (FliMN_C domain-containing protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GHH9_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-21
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            K CEDPLE+YINNQVYC GEAVKIGENFGLKID+VGF KEY+TKIIEF
Sbjct:  248 KPCEDPLELYINNQVYCQGEAVKIGENFGLKIDRVGFKKEYETKIIEF 295

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A518I4S8_9PLAN (Flagellar motor switch protein FliN n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I4S8_9PLAN)

HSP 1 Score: 91.3 bits (225), Expect = 5.670e-21
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            K CEDPL+MYINNQVYC GEAVKIGENFGLKID+VGF +EY+TKIIEF
Sbjct:  246 KPCEDPLDMYINNQVYCQGEAVKIGENFGLKIDQVGFKQEYETKIIEF 293

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A517X3J7_9PLAN (Flagellar motor switch protein FliN n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3J7_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-20
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            KACEDPL++YINN++YC GEAVKIGENFGLKID+VG  KEY+TKIIEF
Sbjct:  246 KACEDPLDLYINNEIYCQGEAVKIGENFGLKIDQVGLKKEYETKIIEF 293

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A517V675_9PLAN (Flagellar motor switch protein FliN n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V675_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-20
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF 144
            K CEDPLE+YINNQVYC GEAVKIGENFGLKID VGF KEY+ KIIEF
Sbjct:  250 KPCEDPLELYINNQVYCQGEAVKIGENFGLKIDHVGFKKEYEPKIIEF 297

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A518CJ26_9PLAN (Flagellar motor switch protein FliN n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CJ26_9PLAN)

HSP 1 Score: 68.6 bits (166), Expect = 1.760e-12
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKII 138
            KACE+ L+MY+NN  YC GE VK+GE+FGLK+++VGFH E + +II
Sbjct:  242 KACEELLDMYVNNTPYCRGEVVKVGEHFGLKVNEVGFHMEREARII 287

[Close]

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Match: A0A257VUF0_9BACT (FliMN_C domain-containing protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257VUF0_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.680e-12
Identity = 27/47 (57.45%), Postives = 40/47 (85.11%), Query Frame = 1

Query:    1 KACEDPLEMYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIE 141
            K+C+D L++Y+NN +YC GEAVKIGE+FGLKI++VG   E ++KI++
Sbjct:  101 KSCDDLLDLYVNNALYCRGEAVKIGESFGLKINEVGVRVERESKILD 147

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig110088.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7KEJ0_9PLAN	4.510e-26	100.00	FliMN_C domain-containing protein n=5 Tax=Gimesia ...	[more]
A0A6I6AAW8_9PLAN	9.370e-26	97.92	FliMN_C domain-containing protein n=2 Tax=Gimesia ...	[more]
A0A517ZZE4_9PLAN	2.590e-25	97.92	Flagellar motor switch protein n=3 Tax=Gimesia pan...	[more]
A0A350KD65_9PLAN	6.360e-23	83.33	FliMN_C domain-containing protein n=1 Tax=Planctom...	[more]
A0A355GHH9_9PLAN	1.080e-21	87.50	FliMN_C domain-containing protein n=8 Tax=Planctom...	[more]
A0A518I4S8_9PLAN	5.670e-21	85.42	Flagellar motor switch protein FliN n=2 Tax=Gimesi...	[more]
A0A517X3J7_9PLAN	2.180e-20	81.25	Flagellar motor switch protein FliN n=2 Tax=Gimesi...	[more]
A0A517V675_9PLAN	2.300e-20	85.42	Flagellar motor switch protein FliN n=2 Tax=Gimesi...	[more]
A0A518CJ26_9PLAN	1.760e-12	60.87	Flagellar motor switch protein FliN n=1 Tax=Polyst...	[more]
A0A257VUF0_9BACT	3.680e-12	57.45	FliMN_C domain-containing protein n=1 Tax=Planctom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig110088	contig	M-pyrifera_M_contig110088:2..148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	75.1
Seed ortholog evalue	8.5e-12
Seed eggNOG ortholog	344747.PM8797T_08659
Preferred name	fliY
KEGG ko	ko:K02417
KEGG TC	3.A.6.2,3.A.6.3
KEGG Pathway	ko02030,ko02040,map02030,map02040
Hectar predicted targeting category	no signal peptide or anchor
EggNOG free text desc.	COG1886 Flagellar motor switch type III secretory pathway
EggNOG OGs	2J11H@203682,COG1886@1,COG1886@2
COG Functional cat.	N
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02035,ko02044
Exons	1
Model size	147
Cds size	123
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815611.633135-UTR-M-pyrifera_M_contig110088:1..25	1622815611.633135-UTR-M-pyrifera_M_contig110088:1..25	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig110088 2..25 +
1692277486.8418963-UTR-M-pyrifera_M_contig110088:1..25	1692277486.8418963-UTR-M-pyrifera_M_contig110088:1..25	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig110088 2..25 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815611.6434062-CDS-M-pyrifera_M_contig110088:25..148	1622815611.6434062-CDS-M-pyrifera_M_contig110088:25..148	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig110088 26..148 +
1692277486.8533669-CDS-M-pyrifera_M_contig110088:25..148	1692277486.8533669-CDS-M-pyrifera_M_contig110088:25..148	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig110088 26..148 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig110088.2109.1	prot_M-pyrifera_M_contig110088.2109.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig110088 26..148 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig110088:2..148+
coding sequence from alignment at M-pyrifera_M_contig110088:2..148+

protein sequence of mRNA_M-pyrifera_M_contig110088.2109.1

>prot_M-pyrifera_M_contig110088.2109.1 ID=prot_M-pyrifera_M_contig110088.2109.1|Name=mRNA_M-pyrifera_M_contig110088.2109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
MYINNQVYCLGEAVKIGENFGLKIDKVGFHKEYKTKIIEF*

mRNA from alignment at M-pyrifera_M_contig110088:2..148+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig110088.2109.1 ID=mRNA_M-pyrifera_M_contig110088.2109.1|Name=mRNA_M-pyrifera_M_contig110088.2109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig110088:2..148+ (Macrocystis pyrifera P11B4 male)
AAAGCTTGCGAAGATCCCCTGGAAATGTATATCAACAACCAGGTTTACTG
CCTGGGTGAAGCGGTCAAAATTGGGGAAAACTTCGGCCTCAAGATCGATA
AGGTTGGCTTTCATAAGGAATACAAAACGAAGATTATTGAATTCTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110088:2..148+

>mRNA_M-pyrifera_M_contig110088.2109.1 ID=mRNA_M-pyrifera_M_contig110088.2109.1|Name=mRNA_M-pyrifera_M_contig110088.2109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig110088:2..148+ (Macrocystis pyrifera P11B4 male)
ATGTATATCAACAACCAGGTTTACTGCCTGGGTGAAGCGGTCAAAATTGG
GGAAAACTTCGGCCTCAAGATCGATAAGGTTGGCTTTCATAAGGAATACA
AAACGAAGATTATTGAATTCTGAATGTATATCAACAACCAGGTTTACTGC
CTGGGTGAAGCGGTCAAAATTGGGGAAAACTTCGGCCTCAAGATCGATAA
GGTTGGCTTTCATAAGGAATACAAAACGAAGATTATTGAATTCTGA