mRNA_M-pyrifera_M_contig110087.2108.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110087.2108.1
Unique NamemRNA_M-pyrifera_M_contig110087.2108.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: A0A1H7TT74_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Aquimarina amphilecti TaxID=1038014 RepID=A0A1H7TT74_9FLAO)

HSP 1 Score: 135 bits (339), Expect = 2.630e-34
Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVT 369
            S +Q   +TI ++N+APSF L  NP+Q V +D+  QTVN FV+NI +GDG +TQ LTF +TNDNN LFS QP++DV TG+LTYT   N  G T VT++LSDDGGTANGG DTS DQTF I VT
Sbjct:  570 SADQTFIITINEVNDAPSFSLPVNPDQTVTEDSGAQTVNGFVSNIDDGDG-NTQILTFNITNDNNMLFSSQPAIDV-TGNLTYTPAANAFGSTTVTVNLSDDGGTANGGVDTSTDQTFMITVT 690          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: A0A3B7BU50_9FLAO (T9SS C-terminal target domain-containing protein n=1 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3B7BU50_9FLAO)

HSP 1 Score: 132 bits (331), Expect = 3.230e-33
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVT 369
            S +Q   +TI ++N+APSF ++ +P+Q   +D+  QTVN F +NI +GDG +TQ LTF VTNDNN LFS QP+++  TG+LTYT   N  G TIVTI+LSDDGGTANGG DTS DQTF I +T
Sbjct:  765 SADQTFMITINEVNDAPSFSILVSPDQTTLEDSGAQTVNGFASNIDDGDG-NTQNLTFNVTNDNNALFSSQPAINEVTGNLTYTSAANVSGSTIVTINLSDDGGTANGGIDTSADQTFTITIT 886          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: UPI0013149053 (T9SS type A sorting domain-containing protein n=1 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=UPI0013149053)

HSP 1 Score: 124 bits (312), Expect = 1.620e-32
Identity = 67/111 (60.36%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   37 INEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVT 369
            +N+APSF ++ +P+Q   +D+  QTVN F +NI +GDG +TQ LTF VTNDNN LFS QP+++  TG+LTYT   N  G TIVTI+LSDDGGTANGG DTS DQTF I +T
Sbjct:    7 LNDAPSFSILVSPDQTTLEDSGAQTVNGFASNIDDGDG-NTQNLTFNVTNDNNALFSSQPAINEVTGNLTYTSAANVSGSTIVTINLSDDGGTANGGIDTSADQTFTITIT 116          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: UPI0011C47CAE (Ig-like domain-containing protein n=1 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=UPI0011C47CAE)

HSP 1 Score: 129 bits (324), Expect = 1.660e-32
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVTE 372
            S +Q   +TI ++N+APSF ++ +P+Q   +D+  QTVN F +NI +GDG +TQ LTF VTNDNN LFS QP+++  TG+LTYT   N  G TIVTI+LSDDGGT+NGG DTS DQTF I + E
Sbjct:  432 SADQTFMITINEVNDAPSFSILVSPDQTTLEDSGAQTVNGFASNIVDGDG-NTQNLTFNVTNDNNALFSSQPAINEVTGNLTYTSAANVSGSTIVTINLSDDGGTSNGGIDTSADQTFMITINE 554          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: A0A3B7C136_9FLAO (T9SS C-terminal target domain-containing protein n=4 Tax=Aquimarina TaxID=290174 RepID=A0A3B7C136_9FLAO)

HSP 1 Score: 129 bits (325), Expect = 2.030e-32
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEV 366
            S +Q   +TI  +N+APSF L+A+P+Q V +D+  QTVN F ++I +GDG +TQ L+F VTNDNN LFS QP++DV TG+LTYT   N  G T VT++LSDDGGTANGG DTS DQTF I V
Sbjct:  431 SADQTFMITINAVNDAPSFSLLASPDQTVVEDSGAQTVNGFASSIDDGDG-NTQTLSFNVTNDNNTLFSSQPTIDV-TGNLTYTPAANAFGSTTVTVNLSDDGGTANGGVDTSADQTFMITV 550          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: UPI001C5929FF (Ig-like domain-containing protein n=1 Tax=Aquimarina litoralis TaxID=584605 RepID=UPI001C5929FF)

HSP 1 Score: 122 bits (305), Expect = 1.040e-29
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEV 366
            S NQ  T+ +  IN+ P F+L A  +Q V +DA  QTV+ F T I +GD   TQ LTF V+NDNN LFS QP++D++TG+LTYT   N  G   VT+SLSD+GGT NGG DTS DQTF I V
Sbjct:  712 SANQTFTIEVLSINDRPEFNLPAVADQTVNEDAGAQTVDGFATGIDDGDTDMTQVLTFNVSNDNNALFSVQPTIDIATGNLTYTTANNANGMATVTVSLSDNGGTVNGGVDTSSDQTFTITV 833          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: A0A1E5SV80_9BACT (Cadherin domain-containing protein n=1 Tax=Roseivirga sp. 4D4 TaxID=1889784 RepID=A0A1E5SV80_9BACT)

HSP 1 Score: 120 bits (302), Expect = 2.750e-29
Identity = 60/119 (50.42%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   13 EVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVT 369
            + TV +T +N+ PSF LI +PNQ ++++A  QTV++F T++++G+  + Q LTF V+NDN+ +F+ QP++D +TG+LT+T   ++ GK  VT+SLSDDGGT NGG DTS +QTF+I VT
Sbjct:  832 QATVNVTAVNDEPSFALIGSPNQTISQNAGTQTVSSFATDLNDGESGTIQVLTFHVSNDNSGIFNTQPAIDGTTGNLTFTPNASSFGKATVTVSLSDDGGTDNGGDDTSPEQTFDIFVT 950          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: UPI001B39EDA9 (T9SS type A sorting domain-containing protein n=1 Tax=Aquimarina sp. MMG016 TaxID=2822690 RepID=UPI001B39EDA9)

HSP 1 Score: 120 bits (300), Expect = 4.800e-29
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   10 QEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEVTE 372
            Q+ T+T+  +N+APSF L  +P+Q+V +++  QTVN F T+I +GD ++ Q LTF V+NDNN LFS QP++D S G+LTYT   + +G   +T+++SDDGGTANGG DTS +QTF I + +
Sbjct:  562 QQFTITVNAVNDAPSFSLPGSPDQSVGENSGAQTVNMFATSIDDGDAETVQTLTFNVSNDNNALFSVQPAIDAS-GNLTYTPATDALGTATITVNISDDGGTANGGSDTSANQTFNITIAD 681          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: UPI000D557F6E (Ig-like domain-containing protein n=1 Tax=Aquimarina sp. Aq107 TaxID=1191912 RepID=UPI000D557F6E)

HSP 1 Score: 116 bits (291), Expect = 3.490e-28
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 1
Query:   40 NEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIEV 366
            N APSF L  +P+Q V +D+ VQTVN F + I +GDG +TQ LTF VTNDNN LFS QP +DV TG+LTYT   N  G T VT++LSDDGGTANGG DTS DQTF I +
Sbjct:  334 NSAPSFSLPTSPDQTVLEDSGVQTVNGFASAIDDGDG-NTQTLTFNVTNDNNVLFSSQPVIDV-TGNLTYTPAANVSGSTTVTVNLSDDGGTANGGIDTSADQTFMITI 440          
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Match: A0A848J526_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Flammeovirgaceae bacterium KN852 TaxID=2729599 RepID=A0A848J526_9BACT)

HSP 1 Score: 116 bits (290), Expect = 1.010e-27
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   16 VTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDGQSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLSDDGGTANGGGDTSEDQTFEIE 363
            + + IT +N+APSFDL ANP+Q   K++ +  +++F TNIS+ D ++TQ+LTF VTN+NN LF+ QPS++  TG LT++   N +G   VT++LSD+GGTANGG + S +QTF+IE
Sbjct:  183 IPINITPVNDAPSFDLPANPDQVKFKNSGIHNISSFATNISDNDEEATQSLTFNVTNNNNALFALQPSINAQTGTLTFSPAANAVGTATVTVNLSDNGGTANGGVNVSPNQTFQIE 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110087.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H7TT74_9FLAO2.630e-3460.98Por secretion system C-terminal sorting domain-con... [more]
A0A3B7BU50_9FLAO3.230e-3357.72T9SS C-terminal target domain-containing protein n... [more]
UPI00131490531.620e-3260.36T9SS type A sorting domain-containing protein n=1 ... [more]
UPI0011C47CAE1.660e-3256.45Ig-like domain-containing protein n=1 Tax=Aquimari... [more]
A0A3B7C136_9FLAO2.030e-3259.02T9SS C-terminal target domain-containing protein n... [more]
UPI001C5929FF1.040e-2954.92Ig-like domain-containing protein n=1 Tax=Aquimari... [more]
A0A1E5SV80_9BACT2.750e-2950.42Cadherin domain-containing protein n=1 Tax=Roseivi... [more]
UPI001B39EDA94.800e-2950.41T9SS type A sorting domain-containing protein n=1 ... [more]
UPI000D557F6E3.490e-2862.39Ig-like domain-containing protein n=1 Tax=Aquimari... [more]
A0A848J526_9BACT1.010e-2750.86T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110087contigM-pyrifera_M_contig110087:195..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.1
Seed ortholog evalue2.4e-17
Seed eggNOG ortholog91464.S7335_4625
KEGG rclassRC00713
KEGG koko:K02040,ko:K14274,ko:K20276
KEGG TC3.A.1.7
KEGG ReactionR02427
KEGG Pathwayko00040,ko02010,ko02020,ko02024,ko05152,map00040,map02010,map02020,map02024,map05152
KEGG ModuleM00222
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
EggNOG OGsCOG0689@1,COG0689@2,COG1361@1,COG1361@2,COG2304@1,COG2304@2,COG2931@1,COG2931@2,COG3291@1,COG3291@2,COG3386@1,COG3386@2
COG Functional cat.J
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.6001892-CDS-M-pyrifera_M_contig110087:194..5661622815611.6001892-CDS-M-pyrifera_M_contig110087:194..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110087 195..566 -
1692277486.829969-CDS-M-pyrifera_M_contig110087:194..5661692277486.829969-CDS-M-pyrifera_M_contig110087:194..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110087 195..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110087.2108.1prot_M-pyrifera_M_contig110087.2108.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110087 195..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110087.2108.1

>prot_M-pyrifera_M_contig110087.2108.1 ID=prot_M-pyrifera_M_contig110087.2108.1|Name=mRNA_M-pyrifera_M_contig110087.2108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
SVNQEVTVTITDINEAPSFDLIANPNQAVAKDAEVQTVNAFVTNISNGDG
QSTQALTFTVTNDNNDLFSEQPSVDVSTGDLTYTLEGNNIGKTIVTISLS
DDGGTANGGGDTSEDQTFEIEVTE
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mRNA from alignment at M-pyrifera_M_contig110087:195..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110087.2108.1 ID=mRNA_M-pyrifera_M_contig110087.2108.1|Name=mRNA_M-pyrifera_M_contig110087.2108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig110087:195..566- (Macrocystis pyrifera P11B4 male)
TCTGTCAATCAGGAGGTGACCGTTACGATCACTGATATTAACGAGGCACC TTCTTTTGATCTTATTGCCAATCCAAATCAGGCGGTAGCAAAAGATGCTG AAGTTCAAACAGTAAATGCTTTTGTCACTAACATCTCGAATGGAGACGGT CAAAGTACTCAGGCATTAACGTTCACTGTTACCAATGACAACAACGACTT GTTTAGCGAGCAGCCAAGTGTAGATGTTTCTACCGGAGACCTGACATATA CTTTGGAAGGTAATAACATTGGCAAAACGATTGTTACTATCAGCCTATCA GATGACGGGGGCACGGCTAACGGAGGGGGCGACACTTCAGAAGATCAGAC CTTCGAAATTGAAGTAACGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110087:195..566-

>mRNA_M-pyrifera_M_contig110087.2108.1 ID=mRNA_M-pyrifera_M_contig110087.2108.1|Name=mRNA_M-pyrifera_M_contig110087.2108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig110087:195..566- (Macrocystis pyrifera P11B4 male)
TCTGTCAATCAGGAGGTGACCGTTACGATCACTGATATTAACGAGGCACC
TTCTTTTGATCTTATTGCCAATCCAAATCAGGCGGTAGCAAAAGATGCTG
AAGTTCAAACAGTAAATGCTTTTGTCACTAACATCTCGAATGGAGACGGT
CAAAGTACTCAGGCATTAACGTTCACTGTTACCAATGACAACAACGACTT
GTTTAGCGAGCAGCCAAGTGTAGATGTTTCTACCGGAGACCTGACATATA
CTTTGGAAGGTAATAACATTGGCAAAACGATTGTTACTATCAGCCTATCA
GATGACGGGGGCACGGCTAACGGAGGGGGCGACACTTCAGAAGATCAGAC
CTTCGAAATTGAAGTAACGGAGTCTGTCAATCAGGAGGTGACCGTTACGA
TCACTGATATTAACGAGGCACCTTCTTTTGATCTTATTGCCAATCCAAAT
CAGGCGGTAGCAAAAGATGCTGAAGTTCAAACAGTAAATGCTTTTGTCAC
TAACATCTCGAATGGAGACGGTCAAAGTACTCAGGCATTAACGTTCACTG
TTACCAATGACAACAACGACTTGTTTAGCGAGCAGCCAAGTGTAGATGTT
TCTACCGGAGACCTGACATATACTTTGGAAGGTAATAACATTGGCAAAAC
GATTGTTACTATCAGCCTATCAGATGACGGGGGCACGGCTAACGGAGGGG
GCGACACTTCAGAAGATCAGACCTTCGAAATTGAAGTAACGGAG
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