mRNA_M-pyrifera_M_contig110081.2107.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110081.2107.1
Unique NamemRNA_M-pyrifera_M_contig110081.2107.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110081.2107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110081contigM-pyrifera_M_contig110081:2..565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue4e-08
Seed eggNOG ortholog502025.Hoch_4255
KEGG koko:K04087
KEGG ModuleM00742
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.stress-induced mitochondrial fusion
EggNOG OGsCOG0330@1,COG0330@2
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000
Exons1
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.5621092-CDS-M-pyrifera_M_contig110081:1..5651622815611.5621092-CDS-M-pyrifera_M_contig110081:1..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110081 2..565 -
1692277486.8180444-CDS-M-pyrifera_M_contig110081:1..5651692277486.8180444-CDS-M-pyrifera_M_contig110081:1..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110081 2..565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110081.2107.1prot_M-pyrifera_M_contig110081.2107.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110081 2..565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110081.2107.1

>prot_M-pyrifera_M_contig110081.2107.1 ID=prot_M-pyrifera_M_contig110081.2107.1|Name=mRNA_M-pyrifera_M_contig110081.2107.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
LLVVAALLGLARGWMQGVQASQSTNRAEGFTVRIDSEEIGVRLDTLTGEL
EVLGSAGYHWVVPGLSEVFRISRAPVTVVLGKEGGRPGLSVRSADGSVFL
IDEARLTYRVAEGGALTFLADSGTEPRRAADWVASLARPILREELGSHTI
QEMTDALVVDAARSRVVDRLAGELIGHGIELVGVTVSK
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mRNA from alignment at M-pyrifera_M_contig110081:2..565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110081.2107.1 ID=mRNA_M-pyrifera_M_contig110081.2107.1|Name=mRNA_M-pyrifera_M_contig110081.2107.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig110081:2..565- (Macrocystis pyrifera P11B4 male)
CTGCTCGTGGTCGCCGCCCTCCTCGGGCTCGCCCGCGGCTGGATGCAAGG
CGTCCAGGCGAGCCAGTCCACCAACCGCGCGGAGGGCTTCACCGTCCGCA
TCGACAGCGAGGAGATCGGCGTGCGCCTCGACACGCTCACCGGTGAGCTC
GAGGTGCTCGGCTCCGCCGGCTACCACTGGGTCGTGCCCGGGCTCAGCGA
GGTGTTCCGCATCTCGCGGGCGCCGGTGACCGTCGTGCTCGGCAAGGAGG
GCGGGCGGCCGGGGCTCTCGGTGCGCTCGGCCGACGGCTCGGTCTTCCTG
ATCGACGAGGCGCGCCTGACCTATCGTGTGGCGGAAGGCGGCGCGCTGAC
CTTCCTGGCCGACTCCGGCACCGAGCCGCGGCGCGCGGCGGACTGGGTCG
CCAGCCTCGCGCGGCCGATCCTGCGCGAGGAGCTCGGCTCGCACACGATC
CAGGAGATGACCGACGCGCTCGTGGTGGACGCGGCCCGCAGCCGGGTCGT
CGACCGCCTGGCCGGTGAGCTGATCGGACACGGCATCGAGCTGGTCGGCG
TGACCGTGTCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110081:2..565-

>mRNA_M-pyrifera_M_contig110081.2107.1 ID=mRNA_M-pyrifera_M_contig110081.2107.1|Name=mRNA_M-pyrifera_M_contig110081.2107.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig110081:2..565- (Macrocystis pyrifera P11B4 male)
CTGCTCGTGGTCGCCGCCCTCCTCGGGCTCGCCCGCGGCTGGATGCAAGG
CGTCCAGGCGAGCCAGTCCACCAACCGCGCGGAGGGCTTCACCGTCCGCA
TCGACAGCGAGGAGATCGGCGTGCGCCTCGACACGCTCACCGGTGAGCTC
GAGGTGCTCGGCTCCGCCGGCTACCACTGGGTCGTGCCCGGGCTCAGCGA
GGTGTTCCGCATCTCGCGGGCGCCGGTGACCGTCGTGCTCGGCAAGGAGG
GCGGGCGGCCGGGGCTCTCGGTGCGCTCGGCCGACGGCTCGGTCTTCCTG
ATCGACGAGGCGCGCCTGACCTATCGTGTGGCGGAAGGCGGCGCGCTGAC
CTTCCTGGCCGACTCCGGCACCGAGCCGCGGCGCGCGGCGGACTGGGTCG
CCAGCCTCGCGCGGCCGATCCTGCGCGAGGAGCTCGGCTCGCACACGATC
CAGGAGATGACCGACGCGCTCGTGGTGGACGCGGCCCGCAGCCGGGTCGT
CGACCGCCTGGCCGGTGAGCTGATCGGACACGGCATCGAGCTGGTCGGCG
TGACCGTGTCGAAGCTGCTCGTGGTCGCCGCCCTCCTCGGGCTCGCCCGC
GGCTGGATGCAAGGCGTCCAGGCGAGCCAGTCCACCAACCGCGCGGAGGG
CTTCACCGTCCGCATCGACAGCGAGGAGATCGGCGTGCGCCTCGACACGC
TCACCGGTGAGCTCGAGGTGCTCGGCTCCGCCGGCTACCACTGGGTCGTG
CCCGGGCTCAGCGAGGTGTTCCGCATCTCGCGGGCGCCGGTGACCGTCGT
GCTCGGCAAGGAGGGCGGGCGGCCGGGGCTCTCGGTGCGCTCGGCCGACG
GCTCGGTCTTCCTGATCGACGAGGCGCGCCTGACCTATCGTGTGGCGGAA
GGCGGCGCGCTGACCTTCCTGGCCGACTCCGGCACCGAGCCGCGGCGCGC
GGCGGACTGGGTCGCCAGCCTCGCGCGGCCGATCCTGCGCGAGGAGCTCG
GCTCGCACACGATCCAGGAGATGACCGACGCGCTCGTGGTGGACGCGGCC
CGCAGCCGGGTCGTCGACCGCCTGGCCGGTGAGCTGATCGGACACGGCAT
CGAGCTGGTCGGCGTGACCGTGTCGAAG
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