mRNA_M-pyrifera_M_contig90891.21068.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90891.21068.1
Unique NamemRNA_M-pyrifera_M_contig90891.21068.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A7K1B5T1_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B5T1_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 9.850e-27
Identity = 82/246 (33.33%), Postives = 119/246 (48.37%), Query Frame = 1
Query:   19 PASADLAVDLGQARLYPVALDLLDHGPDVLSPFSQIIVTPGDLERLTDTQRESLEGWVGSFGGELLIDGDETDVALSIE--ANNRGSFSLGLGTVRFTGTSAAITGFDALFAPT-MPRGSQDFPWG-DFFGGVPTSINLARDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLPSSRQMLSQVLVTSANGGLEGISLPVGW 744
            PA   LA DL +  L P++LD+L+ GP  L+    ++ T  DL  L  T R SL  WV   GG L++D  +   AL  E    + G    G G +R          +DA  AP  +       P+G D F  +   + LA  AGV +P +  I + L VY L++GP+L+ +L+R +R    W+A+P ++VV A GV            T  ATV+   P    +  Q L+TS  GG    ++P GW
Sbjct:  165 PARVTLAGDLRRVDLVPLSLDVLELGPTALTQLDTVLATSDDLVALAPTARLSLFAWV-ERGGHLVLDDADDLTALPAEWRPGDAGYALAGRGEIRLADGVLTAGDWDAAIAPAALSPTDASIPFGADSF--IDPRVTLAERAGVELPRLDRIVVALAVYVLLIGPVLYLVLRRLRRLTAAWIAIPAISVVMATGVVITSRDWGSDDGTTGATVVESGPVGSVIGYQQLLTSRGGGTASFTVPSGW 407          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A2H6HCE8_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2H6HCE8_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-8
Identity = 61/215 (28.37%), Postives = 100/215 (46.51%), Query Frame = 1
Query:   40 VDLGQARLYPVALDLLDHGPD------VLSPFSQIIVTPGDLERLTDTQRESLEGWVGSFGGELLIDGDETDVALSIEANNRGSF----SLGLGTVRFTGTSA-AITGFDALFAPTMPRGSQDFPWGDFFGGVPTSINLARDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVI 651
            VDLGQAR +P+  ++   G        + +  S ++   G L   +D  R +L  W+ S GG L+    + DVA S+     G F    +L  G +      A A+ G+D +F  T   G+        FG +  +   AR   + VPA+  +  G+ ++ L+VGP+ +F+L+RT R    W+ +P  ++V  +    VG Q  E    A A  +
Sbjct:  156 VDLGQARSFPLERNIFTVGEQAGGFARLNTAVSYVVAADGTLVATSDDDRVALLSWIRS-GGTLIA--SQRDVA-SLGEEFAGGFVDETTLASGRIVIGDVGALALNGWDRVFIDTPSIGTVVSYIDQNFGSLDAAAASARP--LSVPALPWLVSGIAMFVLLVGPVNFFVLRRTGRPELAWITIPAASIVFFVAFLVVGQQSVESEVYASAVAL 364          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A3B0T3A7_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0T3A7_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 2.090e-6
Identity = 56/203 (27.59%), Postives = 99/203 (48.77%), Query Frame = 1
Query:   40 VDLGQARLYPVALDLLDHGPDVLSPF-------SQIIVTPGDLERLTDTQRESLEGWVGSFGGELLIDGDETDVALSIEANNRGSF----SLGLGTVRFTGTSA-AITGFDALFAPTMPRGSQDFPWGDFFGGVPTSINLARDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQ 612
            VDLG+AR +P+  D+   G D  S F       S ++   G L   +D  + +L  W+ + GG L+    ++DVA S+     G F    ++  G +     +A A+ G+D +F  T   G+        FG +  +   AR   + VPA+  +  G+ ++ L+VGP+ +F+L+RT +    W+ +P  ++V  +    +G Q
Sbjct:  156 VDLGRARSFPLERDIFTVG-DQESGFIRLNTAVSYVVAAEGSLSDRSDEDKATLVKWIKA-GGVLVA--SQSDVA-SLGDEFSGGFIDDAAIAPGRILVGDVAALALNGWDRVFIDTPSVGTVVAYAEQGFGSLDAAAASARP--LSVPALPWLVSGIAMFVLLVGPVNFFVLRRTGKPELAWVTIPVASIVFFVAFLVIGQQ 351          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: UPI001B09BE9F (hypothetical protein n=1 Tax=Paenibacillus sp. J2TS4 TaxID=2807194 RepID=UPI001B09BE9F)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-5
Identity = 32/97 (32.99%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  391 FFGGVPTSINLARD--AGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLPSSRQ 675
            ++G     +N A D    +  P++G + + +++Y  V+GPIL+F LK+  R   MW  +P LA+V +LG++ VG   R GA  A +    +L  + Q
Sbjct:  352 YYGSAGWELNNALDYFPSLTPPSVGILVLVIIIYAAVIGPILYFTLKKLDRREWMWFTIPLLAIVFSLGIYGVGASGR-GAVMAQSLTTIELDGAGQ 447          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A0K9YMK4_9BACL (Uncharacterized protein n=2 Tax=Brevibacillus reuszeri TaxID=54915 RepID=A0A0K9YMK4_9BACL)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-5
Identity = 25/83 (30.12%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  427 RDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLPSSRQ 675
            R   +++P +    +   VY L+ GP+L+F+L+  +++  MW+ VPGLA++T +G+++ G   R      H T    L +  Q
Sbjct:  354 RIPALKIPEVSWFAVFFGVYALIAGPVLYFILRAKRKQSYMWVIVPGLAIITGIGIFSFGAMQRGTGVMVHQTGFVQLTNDGQ 436          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: UPI000CCC6067 (hypothetical protein n=1 Tax=Brevibacillus reuszeri TaxID=54915 RepID=UPI000CCC6067)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-5
Identity = 26/83 (31.33%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  427 RDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLPSSRQ 675
            R   +++P +    +   VY L+ GP+L+F+L+  +++  MW+ VPGLA+VT +G+++ G   R      H T    L +  Q
Sbjct:  354 RIPALKIPEVSWFALFFGVYALIAGPVLYFILRVKRKQSYMWVIVPGLAIVTGIGIFSFGAMQRGSGVMVHQTGFVQLTNDGQ 436          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A3M8AV72_9BACL (Uncharacterized protein n=1 Tax=Brevibacillus gelatini TaxID=1655277 RepID=A0A3M8AV72_9BACL)

HSP 1 Score: 55.5 bits (132), Expect = 4.090e-5
Identity = 24/84 (28.57%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  424 ARDAGVRVPAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLPSSRQ 675
            A +  +++P +    +  +VY L+ GPIL+F+L+  +++  MW+ VP L+++T +G+++ G   R      H T    L +  Q
Sbjct:  352 AMNPALKIPDVSWFVLFFVVYALIAGPILFFILRAWRKQSYMWVIVPSLSIITGIGIFSFGAMQRGAGVLVHQTSFVQLQNDGQ 435          
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Match: A0A2V5JXZ2_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus flagellatus TaxID=2211139 RepID=A0A2V5JXZ2_9BACL)

HSP 1 Score: 55.1 bits (131), Expect = 5.500e-5
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  448 PAIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWAVGLQLREGANTAHATVIADLP----SSRQMLSQVLVTS 702
            PA G +T+  LVY +VV P L+ +LKR  R    W A+P +AVVT++ ++AVG   R G+  A    + +L     ++R   S V V S
Sbjct:  375 PAYGVLTLLFLVYAIVVAPALYLVLKRIDRREWAWFAIPSIAVVTSVLIYAVGASDR-GSTLAQTLAVNELSGTGSATRMAASSVFVPS 462          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90891.21068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7K1B5T1_9ACTN9.850e-2733.33Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A2H6HCE8_9BACT1.020e-828.37Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A3B0T3A7_9ZZZZ2.090e-627.59Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
UPI001B09BE9F1.700e-532.99hypothetical protein n=1 Tax=Paenibacillus sp. J2T... [more]
A0A0K9YMK4_9BACL2.270e-530.12Uncharacterized protein n=2 Tax=Brevibacillus reus... [more]
UPI000CCC60672.270e-531.33hypothetical protein n=1 Tax=Brevibacillus reuszer... [more]
A0A3M8AV72_9BACL4.090e-528.57Uncharacterized protein n=1 Tax=Brevibacillus gela... [more]
A0A2V5JXZ2_9BACL5.500e-538.20Uncharacterized protein n=1 Tax=Paenibacillus flag... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90891contigM-pyrifera_M_contig90891:6..785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog1382304.JNIL01000001_gene969
Preferred nameMA20_41400
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM AMP-dependent synthetase and ligase
EggNOG OGs1V2NE@1239,4HBPA@91061,COG0318@1,COG0318@2
COG Functional cat.IQ
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
Exons1
Model size780
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.1845248-CDS-M-pyrifera_M_contig90891:5..7851622816821.1845248-CDS-M-pyrifera_M_contig90891:5..785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90891 6..785 -
1692278198.2022998-CDS-M-pyrifera_M_contig90891:5..7851692278198.2022998-CDS-M-pyrifera_M_contig90891:5..785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90891 6..785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90891.21068.1prot_M-pyrifera_M_contig90891.21068.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90891 6..785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90891.21068.1

>prot_M-pyrifera_M_contig90891.21068.1 ID=prot_M-pyrifera_M_contig90891.21068.1|Name=mRNA_M-pyrifera_M_contig90891.21068.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=260bp
LAGRELPASADLAVDLGQARLYPVALDLLDHGPDVLSPFSQIIVTPGDLE
RLTDTQRESLEGWVGSFGGELLIDGDETDVALSIEANNRGSFSLGLGTVR
FTGTSAAITGFDALFAPTMPRGSQDFPWGDFFGGVPTSINLARDAGVRVP
AIGAITIGLLVYTLVVGPILWFLLKRTKREPGMWLAVPGLAVVTALGVWA
VGLQLREGANTAHATVIADLPSSRQMLSQVLVTSANGGLEGISLPVGWRS
VTSNEDMFMG
back to top

mRNA from alignment at M-pyrifera_M_contig90891:6..785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90891.21068.1 ID=mRNA_M-pyrifera_M_contig90891.21068.1|Name=mRNA_M-pyrifera_M_contig90891.21068.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig90891:6..785- (Macrocystis pyrifera P11B4 male)
CTTGCCGGCCGGGAACTTCCGGCCTCGGCCGATCTCGCCGTCGACCTCGG TCAGGCCCGGCTCTACCCGGTTGCACTCGATCTGCTCGACCACGGACCCG ACGTGCTCTCGCCGTTCAGTCAGATCATCGTCACACCTGGTGACCTCGAG CGTCTCACCGACACCCAGCGGGAATCGCTCGAAGGTTGGGTGGGCTCCTT CGGCGGCGAACTGCTGATCGATGGTGACGAAACCGACGTGGCGCTGTCGA TCGAGGCGAACAATCGGGGGAGCTTCTCGCTCGGGCTCGGGACCGTCAGG TTCACCGGCACGAGTGCAGCGATCACCGGTTTCGATGCCTTGTTCGCTCC GACCATGCCCAGAGGCAGCCAGGACTTCCCATGGGGCGACTTCTTCGGTG GTGTCCCGACCTCGATCAACCTCGCCCGAGACGCCGGAGTTCGGGTGCCG GCGATCGGCGCCATCACCATCGGGTTGCTCGTCTACACCTTGGTGGTCGG TCCGATCCTGTGGTTCCTGCTCAAGCGGACCAAGCGTGAACCCGGCATGT GGCTGGCGGTTCCCGGTCTTGCCGTCGTGACGGCCCTCGGTGTCTGGGCG GTCGGTCTTCAACTCCGTGAAGGGGCGAACACCGCCCATGCGACCGTGAT CGCCGATCTCCCGAGCTCTCGCCAGATGCTCTCCCAGGTGCTCGTCACCT CGGCCAATGGCGGTCTGGAGGGCATCTCGCTGCCCGTCGGCTGGCGATCG GTCACCAGCAACGAAGACATGTTCATGGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90891:6..785-

>mRNA_M-pyrifera_M_contig90891.21068.1 ID=mRNA_M-pyrifera_M_contig90891.21068.1|Name=mRNA_M-pyrifera_M_contig90891.21068.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1560bp|location=Sequence derived from alignment at M-pyrifera_M_contig90891:6..785- (Macrocystis pyrifera P11B4 male)
CTTGCCGGCCGGGAACTTCCGGCCTCGGCCGATCTCGCCGTCGACCTCGG
TCAGGCCCGGCTCTACCCGGTTGCACTCGATCTGCTCGACCACGGACCCG
ACGTGCTCTCGCCGTTCAGTCAGATCATCGTCACACCTGGTGACCTCGAG
CGTCTCACCGACACCCAGCGGGAATCGCTCGAAGGTTGGGTGGGCTCCTT
CGGCGGCGAACTGCTGATCGATGGTGACGAAACCGACGTGGCGCTGTCGA
TCGAGGCGAACAATCGGGGGAGCTTCTCGCTCGGGCTCGGGACCGTCAGG
TTCACCGGCACGAGTGCAGCGATCACCGGTTTCGATGCCTTGTTCGCTCC
GACCATGCCCAGAGGCAGCCAGGACTTCCCATGGGGCGACTTCTTCGGTG
GTGTCCCGACCTCGATCAACCTCGCCCGAGACGCCGGAGTTCGGGTGCCG
GCGATCGGCGCCATCACCATCGGGTTGCTCGTCTACACCTTGGTGGTCGG
TCCGATCCTGTGGTTCCTGCTCAAGCGGACCAAGCGTGAACCCGGCATGT
GGCTGGCGGTTCCCGGTCTTGCCGTCGTGACGGCCCTCGGTGTCTGGGCG
GTCGGTCTTCAACTCCGTGAAGGGGCGAACACCGCCCATGCGACCGTGAT
CGCCGATCTCCCGAGCTCTCGCCAGATGCTCTCCCAGGTGCTCGTCACCT
CGGCCAATGGCGGTCTGGAGGGCATCTCGCTGCCCGTCGGCTGGCGATCG
GTCACCAGCAACGAAGACATGTTCATGGGCCTTGCCGGCCGGGAACTTCC
GGCCTCGGCCGATCTCGCCGTCGACCTCGGTCAGGCCCGGCTCTACCCGG
TTGCACTCGATCTGCTCGACCACGGACCCGACGTGCTCTCGCCGTTCAGT
CAGATCATCGTCACACCTGGTGACCTCGAGCGTCTCACCGACACCCAGCG
GGAATCGCTCGAAGGTTGGGTGGGCTCCTTCGGCGGCGAACTGCTGATCG
ATGGTGACGAAACCGACGTGGCGCTGTCGATCGAGGCGAACAATCGGGGG
AGCTTCTCGCTCGGGCTCGGGACCGTCAGGTTCACCGGCACGAGTGCAGC
GATCACCGGTTTCGATGCCTTGTTCGCTCCGACCATGCCCAGAGGCAGCC
AGGACTTCCCATGGGGCGACTTCTTCGGTGGTGTCCCGACCTCGATCAAC
CTCGCCCGAGACGCCGGAGTTCGGGTGCCGGCGATCGGCGCCATCACCAT
CGGGTTGCTCGTCTACACCTTGGTGGTCGGTCCGATCCTGTGGTTCCTGC
TCAAGCGGACCAAGCGTGAACCCGGCATGTGGCTGGCGGTTCCCGGTCTT
GCCGTCGTGACGGCCCTCGGTGTCTGGGCGGTCGGTCTTCAACTCCGTGA
AGGGGCGAACACCGCCCATGCGACCGTGATCGCCGATCTCCCGAGCTCTC
GCCAGATGCTCTCCCAGGTGCTCGTCACCTCGGCCAATGGCGGTCTGGAG
GGCATCTCGCTGCCCGTCGGCTGGCGATCGGTCACCAGCAACGAAGACAT
GTTCATGGGC
back to top