mRNA_M-pyrifera_M_contig110079.2106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110079.2106.1
Unique NamemRNA_M-pyrifera_M_contig110079.2106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A5A8CG81_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CG81_CAFRO)

HSP 1 Score: 110 bits (276), Expect = 2.290e-26
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARASRMLRARLRDMWASFRKLEAA 273
            PHWG NPVC+LCNY TF+L QLPR+ +LDT  + DA++ AAEATF KK+MYYNMR +TL+RNT NV  RA   LR+R R M  S R L  A
Sbjct:  201 PHWGANPVCSLCNYGTFSLCQLPRLEALDTVVLDDAAKQAAEATFTKKQMYYNMRTKTLKRNTHNVVRRAGVALRSRARAMRGSARLLHRA 291          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A5A8D3B3_CAFRO (Protein phosphatase 1 regulatory subunit 7 n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D3B3_CAFRO)

HSP 1 Score: 110 bits (276), Expect = 2.510e-26
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARASRMLRARLRDMWASFRKLEAA 273
            PHWG NPVC+LCNY TF+L QLPR+ +LDT  + DA++ AAEATF KK+MYYNMR +TL+RNT NV  RA   LR+R R M  S R L  A
Sbjct:  201 PHWGANPVCSLCNYGTFSLCQLPRLEALDTVVLDDAAKQAAEATFTKKQMYYNMRTKTLKRNTHNVVRRAGVALRSRARAMRGSARLLHRA 291          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S1C613_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C613_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.080e-23
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARASRMLRARLRDMWASF 255
            PH+G+NPVC LCNY T+ L+QLP + +LDT  + + S+  AEAT++KK+MYYNMRI+TL+RNT NV  RA+  L+ R+  +  SF
Sbjct:  198 PHFGDNPVCNLCNYQTYVLYQLPHVDTLDTVALAEDSKQLAEATYIKKKMYYNMRIKTLKRNTTNVIRRATEALQGRVGQINLSF 282          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S3ETI2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ETI2_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 7.950e-23
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANV 198
            PH+GENPVCALCNYST+ LF L ++  LD   + D +R  AEATF+KK+MYYNMRI+TL+RNT+NV
Sbjct:  140 PHFGENPVCALCNYSTYCLFHLQQLKVLDANNIADEARQLAEATFMKKKMYYNMRIKTLKRNTSNV 205          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A0M0JS56_9EUKA (Leucine-rich repeat-containing protein 9 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS56_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 9.790e-22
Identity = 42/71 (59.15%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARAS 213
            PH+GENP+C+LCNY T+ LF +P++  LD+  VTD  R+ AEAT++KK+MYYNMRI+TL+RNT+NV  +A+
Sbjct:  229 PHFGENPLCSLCNYQTYVLFHMPQLQQLDSMLVTDELRALAEATYMKKKMYYNMRIKTLKRNTSNVLRKAT 299          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S1HTC7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HTC7_9EUGL)

HSP 1 Score: 95.1 bits (235), Expect = 1.790e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANV 198
            PH+G+NPVC LCNY T+ ++ L RIT LDT  +TD  R  AEATF+KK+MYYNMRI+TL+RNT N+
Sbjct:   97 PHFGQNPVCHLCNYQTYTVYHLRRITKLDTMMITDEQRHLAEATFVKKKMYYNMRIKTLKRNTTNL 162          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S0R0V9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R0V9_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 2.430e-21
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARA 210
            PHWG+NP+ +LCNY T+ LF + ++TSLDT  + D ++  AEAT++KK+MYYNMRI+TLRRNT N   RA
Sbjct:  223 PHWGDNPITSLCNYQTYVLFNIQQLTSLDTLVLADETKQLAEATYMKKKMYYNMRIKTLRRNTTNALRRA 292          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S4CM26_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CM26_9EUGL)

HSP 1 Score: 90.9 bits (224), Expect = 8.850e-21
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANV 198
            PH+G NPVC LCNY T+ ++ L +IT LD   +TD  R  AEATF+KK+MYYNMRI+TL+RNT N+
Sbjct:   86 PHFGANPVCQLCNYQTYTIYHLRKITKLDCLMITDDQRHLAEATFVKKKMYYNMRIKTLKRNTTNL 151          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S3R6J2_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R6J2_DUNTE)

HSP 1 Score: 92.8 bits (229), Expect = 1.890e-20
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARAS 213
            P WGE+P+ ALCNY TF LF LP++TSLDT  + D ++  AEATFLKK+MYYNMRI+T+ RN  N+  +A+
Sbjct:  202 PMWGESPLAALCNYQTFVLFMLPKLTSLDTLVLADETKHLAEATFLKKQMYYNMRIKTVFRNARNIIRQAN 272          
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Match: A0A7S1HYF6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HYF6_9EUGL)

HSP 1 Score: 94.0 bits (232), Expect = 2.200e-20
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRMYYNMRIRTLRRNTANVAARAS 213
            PH+GENP+C LCNY T+ L+ L R+T LD   +TD  R  AEATF+KK+MYYNMRI+TL+RNT N+  +A+
Sbjct:  208 PHFGENPLCQLCNYQTYTLYHLNRLTMLDKMKITDEQRHLAEATFVKKKMYYNMRIKTLKRNTNNLLKKAA 278          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110079.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CG81_CAFRO2.290e-2661.54Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8D3B3_CAFRO2.510e-2661.54Protein phosphatase 1 regulatory subunit 7 n=3 Tax... [more]
A0A7S1C613_9STRA7.080e-2354.12Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3ETI2_9EUKA7.950e-2365.15Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0JS56_9EUKA9.790e-2259.15Leucine-rich repeat-containing protein 9 n=1 Tax=C... [more]
A0A7S1HTC7_9EUGL1.790e-2163.64Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0R0V9_9CHLO2.430e-2158.57Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S4CM26_9EUGL8.850e-2160.61Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3R6J2_DUNTE1.890e-2059.15Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7S1HYF6_9EUGL2.200e-2059.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110079contigM-pyrifera_M_contig110079:322..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue4e-17
Seed eggNOG ortholog2903.EOD10739
Preferred nameFAP234
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.5133526-CDS-M-pyrifera_M_contig110079:321..6001622815611.5133526-CDS-M-pyrifera_M_contig110079:321..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110079 322..600 -
1692277486.8063345-CDS-M-pyrifera_M_contig110079:321..6001692277486.8063345-CDS-M-pyrifera_M_contig110079:321..600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110079 322..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110079.2106.1prot_M-pyrifera_M_contig110079.2106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110079 322..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110079.2106.1

>prot_M-pyrifera_M_contig110079.2106.1 ID=prot_M-pyrifera_M_contig110079.2106.1|Name=mRNA_M-pyrifera_M_contig110079.2106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
PHWGENPVCALCNYSTFALFQLPRITSLDTATVTDASRSAAEATFLKKRM
YYNMRIRTLRRNTANVAARASRMLRARLRDMWASFRKLEAARR
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mRNA from alignment at M-pyrifera_M_contig110079:322..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110079.2106.1 ID=mRNA_M-pyrifera_M_contig110079.2106.1|Name=mRNA_M-pyrifera_M_contig110079.2106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig110079:322..600- (Macrocystis pyrifera P11B4 male)
CCTCATTGGGGAGAGAACCCAGTTTGTGCACTGTGCAATTATTCCACGTT TGCTCTCTTTCAACTCCCTCGAATTACATCTCTTGACACTGCAACAGTGA CTGATGCAAGTCGATCCGCTGCAGAAGCTACGTTTCTGAAGAAACGGATG TATTACAACATGCGCATTCGAACTCTGCGGCGGAACACCGCAAATGTTGC TGCTCGTGCAAGTCGTATGCTTCGTGCGAGGTTGCGAGACATGTGGGCAA GTTTTCGCAAATTGGAGGCTGCACGACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110079:322..600-

>mRNA_M-pyrifera_M_contig110079.2106.1 ID=mRNA_M-pyrifera_M_contig110079.2106.1|Name=mRNA_M-pyrifera_M_contig110079.2106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig110079:322..600- (Macrocystis pyrifera P11B4 male)
CCTCATTGGGGAGAGAACCCAGTTTGTGCACTGTGCAATTATTCCACGTT
TGCTCTCTTTCAACTCCCTCGAATTACATCTCTTGACACTGCAACAGTGA
CTGATGCAAGTCGATCCGCTGCAGAAGCTACGTTTCTGAAGAAACGGATG
TATTACAACATGCGCATTCGAACTCTGCGGCGGAACACCGCAAATGTTGC
TGCTCGTGCAAGTCGTATGCTTCGTGCGAGGTTGCGAGACATGTGGGCAA
GTTTTCGCAAATTGGAGGCTGCACGACGTCCTCATTGGGGAGAGAACCCA
GTTTGTGCACTGTGCAATTATTCCACGTTTGCTCTCTTTCAACTCCCTCG
AATTACATCTCTTGACACTGCAACAGTGACTGATGCAAGTCGATCCGCTG
CAGAAGCTACGTTTCTGAAGAAACGGATGTATTACAACATGCGCATTCGA
ACTCTGCGGCGGAACACCGCAAATGTTGCTGCTCGTGCAAGTCGTATGCT
TCGTGCGAGGTTGCGAGACATGTGGGCAAGTTTTCGCAAATTGGAGGCTG
CACGACGT
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