mRNA_M-pyrifera_M_contig90839.21054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90839.21054.1
Unique NamemRNA_M-pyrifera_M_contig90839.21054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90839.21054.1 vs. uniprot
Match: A0A0F9TZC9_9ZZZZ (DUF5906 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9TZC9_9ZZZZ)

HSP 1 Score: 125 bits (315), Expect = 1.900e-29
Identity = 84/253 (33.20%), Postives = 126/253 (49.80%), Query Frame = 1 
Query:   16 KIVHRPFQ-EIGGDF-WNRGY-QLAEQPAPGL----HPTWDKVLQHTGQYLDPYVADDSWCQENNILTGKDYLTVYLAKTVQEPEARLPQLFLYSPQQGTGKDTFTDSIALLFEQGAVCDATIAATSQSGFNSELEGVIVYKLNEIDLSRAGSMAESRCREWTTAHQITVHPKGYRPYQICNYGRVIQMANSLRYKMVDAEDKRVVIIQLSEIPKDDQLDWAT--ELCPPLVDERAAFLHTLVNYDLPKQGAR 747
            K+V++PFQ E  GD  WNR   QL   P        +PTW+++LQH G+ LD  +    W + N IL+G DYL +++A   Q P   LP LF Y P+  +GK +F  ++ LL  +G       A T+Q GFN EL+G ++  + E DL R   +A  R ++W       V  KG  P+   N    IQ  N      V   D R+ +  + E+   D L+     +L P L  E   FL  +++ ++P+  +R
Sbjct:  233 KVVNKPFQPEYPGDREWNRNAAQLRYIPTQDTDELTYPTWNRILQHCGEGLDDAIKIHPWAKANGILSGADYLKIWVASLFQFPYEPLPYLFFYGPED-SGKSSFHQALQLLLTRG-YARGDQALTNQQGFNGELDGALIVVVEETDL-RKNKVANRRIKDWVLTPDFQVIYKGKTPFMATNSMHWIQTDNDYLACPVFPGDTRITMCYVGEL---DPLEMIPRKKLIPLLQKEAPDFLAEILSLEIPESNSR 479
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BLAST of mRNA_M-pyrifera_M_contig90839.21054.1 vs. uniprot
Match: X0V1T2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0V1T2_9ZZZZ)

HSP 1 Score: 96.7 bits (239), Expect = 3.400e-20
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:   16 KIVHRPFQEI--GGDFWNRGY-QLAEQPAPGL----HPTWDKVLQHTGQYLDPYVADDSWCQENNILTGKDYLTVYLAKTVQEPEARLPQLFLYSPQQGTGKDTFTDSIALLFEQGAV-CDATIAATSQSGFNSEL 399
            ++V RPF+    G   WNRG  Q    P+       HPTWDK+L+H G  LD  V  +SWC++N I++G DYL  ++A   QEP   LP LFL+ PQ  +GK    ++++LL   G    D  ++ TSQ  FN EL
Sbjct:  151 ELVSRPFEPEYPGNRQWNRGAAQCRFTPSTSRDDLSHPTWDKILKHVGHGLDEAVEGNSWCKDNGIVSGADYLLCWIASLFQEPREPLPYLFLFGPQN-SGKSILHEALSLLLTNGYQRADNCLSTTSQ--FNGEL 283
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90839.21054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0F9TZC9_9ZZZZ1.900e-2933.20DUF5906 domain-containing protein (Fragment) n=1 T... [more]
X0V1T2_9ZZZZ3.400e-2041.18Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90839contigM-pyrifera_M_contig90839:5..751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.7e-06
Seed eggNOG ortholog1313421.JHBV01000006_gene324
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Psort location Cytoplasmic, score 8.96
EggNOG OGs1ISBV@117747,4NE1A@976,COG3378@1,COG3378@2
COG Functional cat.S
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.480846-CDS-M-pyrifera_M_contig90839:4..7511622816820.480846-CDS-M-pyrifera_M_contig90839:4..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90839 5..751 -
1692278197.7874215-CDS-M-pyrifera_M_contig90839:4..7511692278197.7874215-CDS-M-pyrifera_M_contig90839:4..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90839 5..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90839.21054.1prot_M-pyrifera_M_contig90839.21054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90839 5..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90839.21054.1

>prot_M-pyrifera_M_contig90839.21054.1 ID=prot_M-pyrifera_M_contig90839.21054.1|Name=mRNA_M-pyrifera_M_contig90839.21054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
LNQLLKIVHRPFQEIGGDFWNRGYQLAEQPAPGLHPTWDKVLQHTGQYLD
PYVADDSWCQENNILTGKDYLTVYLAKTVQEPEARLPQLFLYSPQQGTGK
DTFTDSIALLFEQGAVCDATIAATSQSGFNSELEGVIVYKLNEIDLSRAG
SMAESRCREWTTAHQITVHPKGYRPYQICNYGRVIQMANSLRYKMVDAED
KRVVIIQLSEIPKDDQLDWATELCPPLVDERAAFLHTLVNYDLPKQGAR
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mRNA from alignment at M-pyrifera_M_contig90839:5..751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90839.21054.1 ID=mRNA_M-pyrifera_M_contig90839.21054.1|Name=mRNA_M-pyrifera_M_contig90839.21054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig90839:5..751- (Macrocystis pyrifera P11B4 male)
CTAAACCAACTGCTAAAGATAGTGCATCGCCCGTTCCAGGAGATCGGCGG
AGATTTCTGGAATCGCGGCTACCAACTGGCCGAACAACCCGCACCCGGAT
TGCATCCTACGTGGGATAAGGTGCTGCAACACACTGGGCAATACCTCGAC
CCCTACGTGGCTGACGATTCTTGGTGCCAAGAAAACAACATCCTAACAGG
CAAGGATTACTTGACCGTTTATTTAGCTAAGACGGTTCAAGAGCCAGAAG
CTCGTTTGCCTCAGTTGTTTCTGTATTCGCCGCAACAAGGGACCGGCAAG
GATACCTTTACTGATTCGATTGCTCTGTTGTTTGAGCAAGGGGCGGTCTG
TGATGCCACCATCGCAGCCACGAGTCAGAGCGGTTTCAACTCGGAGTTGG
AAGGGGTCATCGTCTACAAATTGAATGAGATTGATCTCAGCCGGGCTGGT
TCTATGGCCGAATCTCGCTGTCGAGAATGGACAACCGCCCACCAAATCAC
GGTTCACCCAAAGGGATACAGACCGTACCAGATTTGCAATTACGGGCGAG
TCATTCAGATGGCAAACAGTCTCCGATACAAGATGGTCGACGCTGAGGAC
AAGAGAGTTGTAATCATTCAACTGTCGGAAATACCCAAGGACGACCAACT
CGATTGGGCAACTGAACTATGCCCGCCACTAGTCGACGAACGGGCCGCAT
TCTTGCATACGCTAGTCAATTATGACTTGCCGAAGCAGGGGGCAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90839:5..751-

>mRNA_M-pyrifera_M_contig90839.21054.1 ID=mRNA_M-pyrifera_M_contig90839.21054.1|Name=mRNA_M-pyrifera_M_contig90839.21054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig90839:5..751- (Macrocystis pyrifera P11B4 male)
CTAAACCAACTGCTAAAGATAGTGCATCGCCCGTTCCAGGAGATCGGCGG
AGATTTCTGGAATCGCGGCTACCAACTGGCCGAACAACCCGCACCCGGAT
TGCATCCTACGTGGGATAAGGTGCTGCAACACACTGGGCAATACCTCGAC
CCCTACGTGGCTGACGATTCTTGGTGCCAAGAAAACAACATCCTAACAGG
CAAGGATTACTTGACCGTTTATTTAGCTAAGACGGTTCAAGAGCCAGAAG
CTCGTTTGCCTCAGTTGTTTCTGTATTCGCCGCAACAAGGGACCGGCAAG
GATACCTTTACTGATTCGATTGCTCTGTTGTTTGAGCAAGGGGCGGTCTG
TGATGCCACCATCGCAGCCACGAGTCAGAGCGGTTTCAACTCGGAGTTGG
AAGGGGTCATCGTCTACAAATTGAATGAGATTGATCTCAGCCGGGCTGGT
TCTATGGCCGAATCTCGCTGTCGAGAATGGACAACCGCCCACCAAATCAC
GGTTCACCCAAAGGGATACAGACCGTACCAGATTTGCAATTACGGGCGAG
TCATTCAGATGGCAAACAGTCTCCGATACAAGATGGTCGACGCTGAGGAC
AAGAGAGTTGTAATCATTCAACTGTCGGAAATACCCAAGGACGACCAACT
CGATTGGGCAACTGAACTATGCCCGCCACTAGTCGACGAACGGGCCGCAT
TCTTGCATACGCTAGTCAATTATGACTTGCCGAAGCAGGGGGCAAGGCTA
AACCAACTGCTAAAGATAGTGCATCGCCCGTTCCAGGAGATCGGCGGAGA
TTTCTGGAATCGCGGCTACCAACTGGCCGAACAACCCGCACCCGGATTGC
ATCCTACGTGGGATAAGGTGCTGCAACACACTGGGCAATACCTCGACCCC
TACGTGGCTGACGATTCTTGGTGCCAAGAAAACAACATCCTAACAGGCAA
GGATTACTTGACCGTTTATTTAGCTAAGACGGTTCAAGAGCCAGAAGCTC
GTTTGCCTCAGTTGTTTCTGTATTCGCCGCAACAAGGGACCGGCAAGGAT
ACCTTTACTGATTCGATTGCTCTGTTGTTTGAGCAAGGGGCGGTCTGTGA
TGCCACCATCGCAGCCACGAGTCAGAGCGGTTTCAACTCGGAGTTGGAAG
GGGTCATCGTCTACAAATTGAATGAGATTGATCTCAGCCGGGCTGGTTCT
ATGGCCGAATCTCGCTGTCGAGAATGGACAACCGCCCACCAAATCACGGT
TCACCCAAAGGGATACAGACCGTACCAGATTTGCAATTACGGGCGAGTCA
TTCAGATGGCAAACAGTCTCCGATACAAGATGGTCGACGCTGAGGACAAG
AGAGTTGTAATCATTCAACTGTCGGAAATACCCAAGGACGACCAACTCGA
TTGGGCAACTGAACTATGCCCGCCACTAGTCGACGAACGGGCCGCATTCT
TGCATACGCTAGTCAATTATGACTTGCCGAAGCAGGGGGCAAGG
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