mRNA_M-pyrifera_M_contig90835.21052.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90835.21052.1
Unique NamemRNA_M-pyrifera_M_contig90835.21052.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A7S3D058_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D058_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 5.330e-24
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKMVR 234
            K  LTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKMVR
Sbjct:   17 KQELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKMVR 94
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A5D6XLL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLL9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.030e-23
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KM
Sbjct:   22 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 97
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: D8LDH9_ECTSI (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.340e-23
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMT+KM
Sbjct:   14 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 89
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A1V9ZCQ4_9STRA (Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID=A0A1V9ZCQ4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.730e-23
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KM
Sbjct:   20 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 95
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A024GNG8_9STRA (Uncharacterized protein n=21 Tax=Stramenopiles TaxID=33634 RepID=A0A024GNG8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.160e-23
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT KM
Sbjct:   23 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTTKM 98
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BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A813A1S0_SYMMI (Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813A1S0_SYMMI)

HSP 1 Score: 94.7 bits (234), Expect = 6.480e-23
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMTAKM
Sbjct:   13 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKM 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A7S0PF46_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PF46_CAFRO)

HSP 1 Score: 92.4 bits (228), Expect = 1.830e-22
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK   XXXXXXXXXXXXXXXXXXX FL+MMTAKM
Sbjct:   19 KFELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKAEXXXXXXXXXXXXXXXXXXXXFLDMMTAKM 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: L1JCU3_GUITC (Uncharacterized protein n=4 Tax=Cryptophyceae TaxID=3027 RepID=L1JCU3_GUITC)

HSP 1 Score: 93.6 bits (231), Expect = 1.890e-22
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF+LTEEQKQEIREAFDLFDTDGSG+IDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMTAKM
Sbjct:   14 KFALTEEQKQEIREAFDLFDTDGSGSIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKM 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A7S4IDL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IDL9_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 2.520e-22
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            K  LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXX EFL+MMTAKM
Sbjct:   18 KPELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXDEFLQMMTAKM 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Match: A0A3R7A958_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7A958_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.050e-22
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKM 228
            KF LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KM
Sbjct:  168 KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90835.21052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3D058_9EUKA5.330e-2496.15Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A5D6XLL9_9STRA1.030e-2394.74Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D8LDH9_ECTSI2.340e-2397.37Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_... [more]
A0A1V9ZCQ4_9STRA2.730e-2394.74Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A024GNG8_9STRA4.160e-2394.74Uncharacterized protein n=21 Tax=Stramenopiles Tax... [more]
A0A813A1S0_SYMMI6.480e-2397.37Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813... [more]
A0A7S0PF46_CAFRO1.830e-2290.79Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
L1JCU3_GUITC1.890e-2296.05Uncharacterized protein n=4 Tax=Cryptophyceae TaxI... [more]
A0A7S4IDL9_9EUKA2.520e-2294.74Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A3R7A958_9STRA5.050e-2294.74Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90835contigM-pyrifera_M_contig90835:130..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog112098.XP_008618385.1
Preferred nameCETN1
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
Ec32 ortholog descriptioncentrin
Ec32 orthologEc-15_000530.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.4022572-CDS-M-pyrifera_M_contig90835:129..2021622816820.4022572-CDS-M-pyrifera_M_contig90835:129..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90835 130..202 +
1692278197.7459254-CDS-M-pyrifera_M_contig90835:129..2021692278197.7459254-CDS-M-pyrifera_M_contig90835:129..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90835 130..202 +
1622816820.4182665-CDS-M-pyrifera_M_contig90835:327..4911622816820.4182665-CDS-M-pyrifera_M_contig90835:327..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90835 328..491 +
1692278197.7621572-CDS-M-pyrifera_M_contig90835:327..4911692278197.7621572-CDS-M-pyrifera_M_contig90835:327..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90835 328..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90835.21052.1prot_M-pyrifera_M_contig90835.21052.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90835 130..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90835.21052.1

>prot_M-pyrifera_M_contig90835.21052.1 ID=prot_M-pyrifera_M_contig90835.21052.1|Name=mRNA_M-pyrifera_M_contig90835.21052.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
KFSLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIRK
MIADIDKDGNGTIDFNEFLEMMTAKMVRN
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mRNA from alignment at M-pyrifera_M_contig90835:130..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90835.21052.1 ID=mRNA_M-pyrifera_M_contig90835.21052.1|Name=mRNA_M-pyrifera_M_contig90835.21052.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=362bp|location=Sequence derived from alignment at M-pyrifera_M_contig90835:130..491+ (Macrocystis pyrifera P11B4 male)
AAGTTTTCCTTGACAGAAGAGCAGAAGCAGGAGATCCGTGAGGCTTTCGA
CCTTTTTGACACGGATGGCAGCGGTATGTGCAGAATTTGAGTGATGGAGG
GGGTGTAAGAGGGTGTGTTGGTGCAGAGTGGCATGGTGGGTATGGGGTGA
AAGGGTATGAGGGTTGCGAAAAGTGCATTTTTGTTTTGGACCATGCAGGG
ACCATCGATGCCAAGGAGCTCAAAGTGGCCATGCGTGCCCTCGGATTTGA
GCCAAAGAAGGAAGAGATCCGCAAAATGATTGCTGACATCGACAAGGATG
GCAATGGAACCATCGATTTCAACGAGTTCCTTGAAATGATGACTGCAAAG
ATGGTACGAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90835:130..491+

>mRNA_M-pyrifera_M_contig90835.21052.1 ID=mRNA_M-pyrifera_M_contig90835.21052.1|Name=mRNA_M-pyrifera_M_contig90835.21052.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig90835:130..491+ (Macrocystis pyrifera P11B4 male)
AAGTTTTCCTTGACAGAAGAGCAGAAGCAGGAGATCCGTGAGGCTTTCGA
CCTTTTTGACACGGATGGCAGCGAAGTTTTCCTTGACAGAAGAGCAGAAG
CAGGAGATCCGTGAGGCTTTCGACCTTTTTGACACGGATGGCAGCGGGAC
CATCGATGCCAAGGAGCTCAAAGTGGCCATGCGTGCCCTCGGATTTGAGC
CAAAGAAGGAAGAGATCCGCAAAATGATTGCTGACATCGACAAGGATGGC
AATGGAACCATCGATTTCAACGAGTTCCTTGAAATGATGACTGCAAAGAT
GGTACGAAATGGACCATCGATGCCAAGGAGCTCAAAGTGGCCATGCGTGC
CCTCGGATTTGAGCCAAAGAAGGAAGAGATCCGCAAAATGATTGCTGACA
TCGACAAGGATGGCAATGGAACCATCGATTTCAACGAGTTCCTTGAAATG
ATGACTGCAAAGATGGTACGAAAT
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