mRNA_M-pyrifera_M_contig90762.21037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90762.21037.1
Unique NamemRNA_M-pyrifera_M_contig90762.21037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A286UDD0_9AGAM (40s ribosomal s19 n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UDD0_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-15
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   37 LKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++DVSA AFIT YA HLKRSG  EVP W   VK+G  +ELAPYD DWF+TRA    R
Sbjct:    4 VRDVSADAFITAYAAHLKRSGKLEVPTWVDIVKTGHYKELAPYDPDWFYTRAAAVAR 60
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A8J5HSU7_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HSU7_ZINOF)

HSP 1 Score: 76.3 bits (186), Expect = 1.620e-15
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   10 VLETPPAYTLKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++E P + T+KDVS   F+  YA HLKRSG  E+P+WA  VK+G+ +ELAPYD DWF+ R+ +  R
Sbjct:   61 IMENPVSKTVKDVSPHEFVKAYAAHLKRSGKLELPEWADIVKTGRFKELAPYDPDWFYIRSASMAR 126
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A0P1BSS1_9BASI (40s ribosomal protein s19 n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BSS1_9BASI)

HSP 1 Score: 75.1 bits (183), Expect = 4.510e-15
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   37 LKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++DV A AFIT YA HLKR+G  EVP WA  VK+GK +ELAPYD DWF+ RA    R
Sbjct:   39 VRDVPADAFITAYANHLKRAGKIEVPTWADTVKTGKGKELAPYDPDWFYVRAAALAR 95
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: UPI001B870F25 (uncharacterized protein n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B870F25)

HSP 1 Score: 72.8 bits (177), Expect = 8.330e-15
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   37 LKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++D+SA AFIT YA HLKRSG  EVP W   VK+G  +ELAPYD DW++ RA    R
Sbjct:    4 VRDISAEAFITAYASHLKRSGKLEVPTWVDLVKTGSFKELAPYDPDWYYVRAAAVAR 60
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A7I8L2E5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L2E5_SPIIN)

HSP 1 Score: 72.8 bits (177), Expect = 1.050e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   28 AYTLKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            A T+KDVS   F+  YA HLKRSG  E+P WA  VK+G  +ELAPYD DW++TRA +  R
Sbjct:    4 ARTVKDVSPHEFVKAYASHLKRSGKIELPHWADIVKTGMHKELAPYDPDWYYTRAASIAR 63
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A550C7F4_9AGAR (Ribosomal protein S19e n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550C7F4_9AGAR)

HSP 1 Score: 72.8 bits (177), Expect = 1.440e-14
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   37 LKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++D+SA AFIT YA HLKRSG  EVP W   VK+G  +ELAPYD DW++ RA    R
Sbjct:    4 VRDISADAFITAYASHLKRSGKLEVPTWVDIVKTGSYKELAPYDPDWYYVRAAAVAR 60
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A7S0A846_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A846_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 1.540e-14
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   34 TLKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            T+KDV A  FI+ +A+HLKR G FE+PKW+  VK+GKS+EL PYD DW + R  +  R
Sbjct:   18 TVKDVEAEKFISAFAQHLKRQGRFEIPKWSDVVKTGKSKELPPYDPDWLYVRTASMVR 75
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: UPI001C79D214 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C79D214)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-14
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   37 LKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            ++DV+A AFIT YA HLKRSG  EVP W   VK+G  +ELAPYD+DW++ RA    R
Sbjct:    4 VRDVAADAFITAYASHLKRSGKLEVPTWVDIVKTGHYKELAPYDQDWYYVRAAAVAR 60
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: A0A1S4B471_TOBAC (40S ribosomal protein S19-3-like n=28 Tax=cellular organisms TaxID=131567 RepID=A0A1S4B471_TOBAC)

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-14
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   25 PAYTLKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            PA  +KDVS   F+  YA HLKRSG  E+P+W   VK+GK +ELAPYD DW++ RA +  R
Sbjct:    3 PARNVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDPDWYYIRAASMAR 63
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BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Match: UPI00053F94AC (40S ribosomal protein S19-1 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F94AC)

HSP 1 Score: 72.0 bits (175), Expect = 2.150e-14
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   25 PAYTLKDVSASAFITEYAKHLKRSG-FEVPKWAAYVKSGKSRELAPYDEDWFFTRAGTCCR 204
            P+ T+KDVS   F+  YA HLKRSG  E+P+W   VK+GK ++LAPYD DW++ RA +  R
Sbjct:    3 PSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAASMAR 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90762.21037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A286UDD0_9AGAM1.250e-1563.1640s ribosomal s19 n=1 Tax=Pyrrhoderma noxium TaxID... [more]
A0A8J5HSU7_ZINOF1.620e-1551.52Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A0P1BSS1_9BASI4.510e-1561.4040s ribosomal protein s19 n=2 Tax=Ceraceosorus Tax... [more]
UPI001B870F258.330e-1557.89uncharacterized protein n=1 Tax=Suillus paluster T... [more]
A0A7I8L2E5_SPIIN1.050e-1456.67Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A550C7F4_9AGAR1.440e-1457.89Ribosomal protein S19e n=1 Tax=Auriculariopsis amp... [more]
A0A7S0A846_9DINO1.540e-1455.17Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
UPI001C79D2141.600e-1457.89uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A1S4B471_TOBAC2.100e-1454.1040S ribosomal protein S19-3-like n=28 Tax=cellular... [more]
UPI00053F94AC2.150e-1452.4640S ribosomal protein S19-1 n=1 Tax=Beta vulgaris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90762contigM-pyrifera_M_contig90762:515..721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.5
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog160860.XP_007353046.1
Preferred nameRPS19A
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031503,GO:0032991,GO:0033036,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0097064,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Ribosomal protein S19
EggNOG OGs228PW@155619,3A1U1@33154,3H0P8@355688,3P1YW@4751,3V0H5@5204,COG2238@1,KOG3411@2759
COG Functional cat.J
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.6745477-CDS-M-pyrifera_M_contig90762:514..7211622816819.6745477-CDS-M-pyrifera_M_contig90762:514..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90762 515..721 -
1692278197.2897546-CDS-M-pyrifera_M_contig90762:514..7211692278197.2897546-CDS-M-pyrifera_M_contig90762:514..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90762 515..721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90762.21037.1prot_M-pyrifera_M_contig90762.21037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90762 515..721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90762.21037.1

>prot_M-pyrifera_M_contig90762.21037.1 ID=prot_M-pyrifera_M_contig90762.21037.1|Name=mRNA_M-pyrifera_M_contig90762.21037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
IAEVLETPPAYTLKDVSASAFITEYAKHLKRSGFEVPKWAAYVKSGKSRE
LAPYDEDWFFTRAGTCCR*
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mRNA from alignment at M-pyrifera_M_contig90762:515..721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90762.21037.1 ID=mRNA_M-pyrifera_M_contig90762.21037.1|Name=mRNA_M-pyrifera_M_contig90762.21037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig90762:515..721- (Macrocystis pyrifera P11B4 male)
ATTGCAGAGGTTCTGGAGACGCCACCAGCGTACACGTTGAAGGACGTGTC
TGCTAGCGCATTCATCACTGAGTATGCCAAGCACTTGAAGCGCTCTGGGT
TCGAAGTCCCAAAGTGGGCCGCTTACGTCAAGTCTGGCAAGTCTCGTGAG
CTTGCTCCTTACGACGAAGATTGGTTCTTCACCCGGGCAGGTACGTGCTG
TAGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90762:515..721-

>mRNA_M-pyrifera_M_contig90762.21037.1 ID=mRNA_M-pyrifera_M_contig90762.21037.1|Name=mRNA_M-pyrifera_M_contig90762.21037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig90762:515..721- (Macrocystis pyrifera P11B4 male)
ATTGCAGAGGTTCTGGAGACGCCACCAGCGTACACGTTGAAGGACGTGTC
TGCTAGCGCATTCATCACTGAGTATGCCAAGCACTTGAAGCGCTCTGGGT
TCGAAGTCCCAAAGTGGGCCGCTTACGTCAAGTCTGGCAAGTCTCGTGAG
CTTGCTCCTTACGACGAAGATTGGTTCTTCACCCGGGCAGGTACGTGCTG
TAGATAGATTGCAGAGGTTCTGGAGACGCCACCAGCGTACACGTTGAAGG
ACGTGTCTGCTAGCGCATTCATCACTGAGTATGCCAAGCACTTGAAGCGC
TCTGGGTTCGAAGTCCCAAAGTGGGCCGCTTACGTCAAGTCTGGCAAGTC
TCGTGAGCTTGCTCCTTACGACGAAGATTGGTTCTTCACCCGGGCAGGTA
CGTGCTGTAGATAG
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