prot_M-pyrifera_M_contig110068.2103.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110068.2103.1
Unique Nameprot_M-pyrifera_M_contig110068.2103.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length181
Homology
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A433B9U9_9FUNG (DNA-directed RNA polymerase (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433B9U9_9FUNG)

HSP 1 Score: 197 bits (501), Expect = 1.480e-55
Identity = 103/182 (56.59%), Postives = 130/182 (71.43%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T++QCLAYLG KFR  +   +   D++VGE L+R+ VLVHL D  DKFN L+ M+RKLYALV+G    DNPDS  +Q+ILL GHLY MI KEKL++WL  ++    +D+R+G    + + KYF R   R   DVG +L YFLATGN+ SNTGLDL Q +GY IVAEKLN+ RYL+HFR VHR
Sbjct:  302 TRDQCLAYLGDKFRVVMGFDDDFLDREVGEGLLRKIVLVHLIDRRDKFNLLVYMIRKLYALVSGACCADNPDSPQHQEILLGGHLYGMIFKEKLEDWLTTVKQHITLDVRKGHAVDFFNSKYFTRTLARVPSDVGQKLSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRYLSHFRCVHR 483          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A0L0HQS5_SPIPD (DNA-directed RNA polymerase subunit beta n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQS5_SPIPD)

HSP 1 Score: 196 bits (497), Expect = 1.320e-54
Identity = 99/185 (53.51%), Postives = 133/185 (71.89%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER---SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T+ QCL+YLGSKF   +     M ++QVGE  ++R VLVHLED  +KF+ L+ M++KLYALVAG+   DNPDS  +Q+ILLPGHLYL I+KEK+ +WL  I+ + + D+RR      +  +KY  +  ++   S D+G ++EYFLATGN+ SNTGLDL Q SGY IVAEKLN+ RY++HFR VHR
Sbjct:  372 TRKQCLSYLGSKFAVMMDSPEDMFEEQVGEEFLKRVVLVHLEDSREKFDMLIFMMQKLYALVAGECAPDNPDSPQHQEILLPGHLYLGIMKEKMGDWLSAIKAQIQQDLRRMPASVDFFDKKYLSKVFQKTGGSADIGRKMEYFLATGNLVSNTGLDLQQTSGYTIVAEKLNFYRYISHFRSVHR 556          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A1Y1YSZ3_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YSZ3_9FUNG)

HSP 1 Score: 194 bits (493), Expect = 4.370e-54
Identity = 101/183 (55.19%), Postives = 133/183 (72.68%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYF-KRCTERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T+ QCL YLG KFR  L      ++ QVGE L+++ VLVHLED  DKFN L+ M++KLYALV+G    DNPDS  +Q+ILL GHLYL I+KEKL++W++  R +  +D+RRG +   +  +KY  K  ++   D+G +L+YFLATGN+ SNTGLDL Q SGY IVAEKLN+LRY++HFR VHR
Sbjct:  307 TRTQCLEYLGDKFRIVLNLPPDYTNAQVGEALLKKIVLVHLEDNRDKFNLLVFMIQKLYALVSGACCADNPDSPQHQEILLGGHLYLNILKEKLEDWIEGFRRQVALDVRRGLSSVNFFDKKYIVKALSKVPSDIGQKLQYFLATGNLISNTGLDLQQVSGYTIVAEKLNFLRYISHFRCVHR 489          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A197JP97_9FUNG (DNA-directed RNA polymerase subunit beta n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JP97_9FUNG)

HSP 1 Score: 192 bits (489), Expect = 1.520e-53
Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTERSI---DVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T+ QCLAYLG KFR  +      SD +VGE L+R+ VLVHL+   DKFN L+ M+RK+YALVAG+   DNPDS  +Q++LL GHLY  I+KEK+++WL+ IR +   D+RR      + + +YF +  +++    DVG+++ YFLATGN+ SNTGLDL Q +GY IVAEKLN+ R+LAHFR +HR
Sbjct:  305 TREQCLAYLGDKFRVVMNFPEDYSDVEVGEGLLRKIVLVHLKSNRDKFNLLIFMIRKVYALVAGECSPDNPDSPQHQEVLLGGHLYGSIIKEKIEDWLNGIRAQINQDVRRKVTGVDFMNNQYFTKTLQKTSGLQDVGSKMSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRFLAHFRCIHR 489          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A8H7BQ95_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ95_9FUNG)

HSP 1 Score: 191 bits (485), Expect = 5.250e-53
Identity = 97/183 (53.01%), Postives = 131/183 (71.58%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T++QCLAYLG KFR  +  S  +SDK+VGE L+++ VLVHL D  DKFN ++ M+RKLY+LV+G+   DNPD+  +Q++LL GHLY MI+KEK+ +WL  I+ +   DIR    R  +  + YF +   + + DVG +L YFLATGN+ S TGLDL Q SGY IVAEKLN+ RY++HFR +HR
Sbjct:  309 TRDQCLAYLGEKFRVIMGLSEDLSDKEVGEALLQKIVLVHLPDNRDKFNLMVYMIRKLYSLVSGECCPDNPDAPQHQEVLLGGHLYNMILKEKIFDWLTSIKQQVRNDIRMAPQRVDFFDKNYFLQAVRKLNSDVGVKLSYFLATGNLVSKTGLDLQQASGYTIVAEKLNFYRYISHFRCIHR 491          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A433QYV5_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QYV5_9FUNG)

HSP 1 Score: 189 bits (481), Expect = 1.840e-52
Identity = 102/182 (56.04%), Postives = 126/182 (69.23%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T++QCLAYLG KFR  +   +   D++VGE L+R+ VLVHL D  DKFN L+ M+RKLYALV+G    DNPDS  +Q+ILL GHLY MI KEKL++WL  ++    +D+R          KYF R   R   DVG +L YFLATGN+ SNTGLDL Q +GY IVAEKLN+ RYL+HFR VHR
Sbjct:  302 TRDQCLAYLGDKFRVVMGFDDDFLDREVGEGLLRKIVLVHLIDRRDKFNLLVYMIRKLYALVSGACCADNPDSPQHQEILLGGHLYGMIFKEKLEDWLTTVKQHITLDVR----------KYFTRTLARVPSDVGQKLSYFLATGNLVSNTGLDLQQATGYTIVAEKLNFYRYLSHFRCVHR 473          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: B6K4L6_SCHJY (DNA-directed RNA polymerase subunit beta n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K4L6_SCHJY)

HSP 1 Score: 189 bits (480), Expect = 2.500e-52
Identity = 98/183 (53.55%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            TQ Q L YLGSKFR  L  +  ++D +VG  L+RR VLV+L D  DKF  LL M+RKLYALVAG+   DNPDS  +Q+ILL G L+  I+KEK+ +WL  IR + + D+RRG     +  +KY  R   + + D+G RL+YFL+TGN+ SNTGLDL Q +GY +VAEKLN+ R+L+HFR VHR
Sbjct:  299 TQTQSLQYLGSKFRVVLGLAEDLTDVEVGRTLLRRVVLVNLPDNRDKFRMLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLFAQIIKEKIDDWLTSIRAQIQQDVRRGAAGIDFSDKKYLSRVFSKVNSDIGTRLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHR 481          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A507E996_9FUNG (DNA-directed RNA polymerase subunit beta n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E996_9FUNG)

HSP 1 Score: 189 bits (479), Expect = 3.440e-52
Identity = 95/185 (51.35%), Postives = 132/185 (71.35%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRA-YKSEKYFKRC---TERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T+ QCL+YLGSKF   +   +   ++ VG   ++R VLVHLED  +KF+ L+ M++KLYALVAG+   DNPDS  +Q+ILLPGHLY+ I+KEK+ +WL  I+++ +MD+R    +  +  +KY  +    T  + D+G ++EYFLATGN+ SNTGLDL Q SGY IVAEKLN+ RY++HFR VHR
Sbjct:  311 TRKQCLSYLGSKFAVMMDSPDDQYEEDVGIEFLKRVVLVHLEDDREKFDMLIFMMQKLYALVAGECSADNPDSPQHQEILLPGHLYMSIMKEKMADWLVAIKLQIQMDLRLKPAQVDFADKKYMGKVFSKTGGAADIGRKMEYFLATGNLVSNTGLDLQQTSGYTIVAEKLNFYRYISHFRSVHR 495          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A1A5ZTK8_9TREE (DNA-directed RNA polymerase subunit beta n=7 Tax=Kwoniella TaxID=490731 RepID=A0A1A5ZTK8_9TREE)

HSP 1 Score: 189 bits (479), Expect = 3.460e-52
Identity = 96/182 (52.75%), Postives = 128/182 (70.33%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRC-TERSIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T  QCL YLG KFR  L C +  ++ QVG  L+ R VLVHL +  DKF  L+ MLRKLY+LV+G    DNPDS  + ++LLPG LY MI+KE+  + L+ +R++ + D+R+G+ R++   KYF    T+ + D+GA+L YFLATGN+ S TGLDL Q SGY IVAEKLN+ RYL+HFR +HR
Sbjct:  347 TGEQCLDYLGEKFRVVLGCPDDWNNIQVGSFLLSRVVLVHLPNPRDKFRMLIFMLRKLYSLVSGASCADNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVRLQIQQDLRQGKARSFSDPKYFASVLTKTNWDIGAKLSYFLATGNLVSPTGLDLQQTSGYTIVAEKLNFYRYLSHFRCIHR 528          
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Match: A0A427XJC3_9TREE (DNA-directed RNA polymerase subunit beta n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XJC3_9TREE)

HSP 1 Score: 188 bits (478), Expect = 4.690e-52
Identity = 95/182 (52.20%), Postives = 126/182 (69.23%), Query Frame = 0
Query:    1 TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNFLLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQIRIKFEMDIRRGENRAYKSEKYFKRCTER-SIDVGARLEYFLATGNIQSNTGLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR 181
            T +QCL YLG KFR  + C    ++ QVG  L+++ VLVHL +  +KF  L+ MLRKLY++VAG    DNPDS  + ++LLPG LY MI+KE+  E L  +R++   DIR+G  + + S KYF    ++ + DVGA+L YFLATGN+ S TG+DL Q SG+ IVAEKLNY RYLAHFR +HR
Sbjct:  327 TGSQCLDYLGDKFRVVMNCPEDWTNSQVGAFLLQKVVLVHLPNPREKFRMLIFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAMIIKERFDESLQAVRLQIAQDIRQGRAKDFTSAKYFPSVLQKVNFDVGAKLSYFLATGNLVSPTGIDLQQTSGFTIVAEKLNYYRYLAHFRCIHR 508          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110068.2103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433B9U9_9FUNG1.480e-5556.59DNA-directed RNA polymerase (Fragment) n=1 Tax=Jim... [more]
A0A0L0HQS5_SPIPD1.320e-5453.51DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A1Y1YSZ3_9FUNG4.370e-5455.19DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]
A0A197JP97_9FUNG1.520e-5352.43DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A8H7BQ95_9FUNG5.250e-5353.01DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A433QYV5_9FUNG1.840e-5256.04DNA-directed RNA polymerase subunit beta n=1 Tax=J... [more]
B6K4L6_SCHJY2.500e-5253.55DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A507E996_9FUNG3.440e-5251.35DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A1A5ZTK8_9TREE3.460e-5252.75DNA-directed RNA polymerase subunit beta n=7 Tax=K... [more]
A0A427XJC3_9TREE4.690e-5252.20DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 1..79
e-value: 2.9E-6
score: 27.1
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 1..70
e-value: 2.2E-22
score: 81.6
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 1..181
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..181
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110068contigM-pyrifera_M_contig110068:2..599 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110068.2103.1mRNA_M-pyrifera_M_contig110068.2103.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110068 2..599 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110068.2103.1 ID=prot_M-pyrifera_M_contig110068.2103.1|Name=mRNA_M-pyrifera_M_contig110068.2103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
TQNQCLAYLGSKFRGKLRCSNRMSDKQVGELLIRRFVLVHLEDGVDKFNF
LLLMLRKLYALVAGDIPVDNPDSQTNQDILLPGHLYLMIVKEKLQEWLDQ
IRIKFEMDIRRGENRAYKSEKYFKRCTERSIDVGARLEYFLATGNIQSNT
GLDLLQKSGYCIVAEKLNYLRYLAHFRGVHR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR037034RNA_pol_Rpb2_2_sf
IPR015712DNA-dir_RNA_pol_su2