mRNA_M-pyrifera_M_contig90749.21033.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90749.21033.1
Unique NamemRNA_M-pyrifera_M_contig90749.21033.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90749.21033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90749contigM-pyrifera_M_contig90749:31..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score66.2
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog7070.TC000095-PA
KEGG koko:K12880
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00406
Hectar predicted targeting categoryother localisation
GOsGO:0000346,GO:0000347,GO:0000445,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0031503,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705
EggNOG free text desc.THO complex subunit
EggNOG OGs38FC1@33154,3B96Z@33208,3CVU4@33213,3SK30@50557,41W2W@6656,KOG1407@1,KOG1407@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.4436553-CDS-M-pyrifera_M_contig90749:30..4621622816819.4436553-CDS-M-pyrifera_M_contig90749:30..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90749 31..462 -
1692278197.1418276-CDS-M-pyrifera_M_contig90749:30..4621692278197.1418276-CDS-M-pyrifera_M_contig90749:30..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90749 31..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90749.21033.1prot_M-pyrifera_M_contig90749.21033.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90749 31..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90749.21033.1

>prot_M-pyrifera_M_contig90749.21033.1 ID=prot_M-pyrifera_M_contig90749.21033.1|Name=mRNA_M-pyrifera_M_contig90749.21033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
ERASAERVCALSWSWDGELLAVADRAVKAGGGGTENVVRTFSLTPGGVKN
AAMIRGHSAVVEAVCWGRHHGKFLCSTASDGSVRLWDLRVRRNVGVVGVK
GFPRSVSLSSDGNQGALVTSDGALTLFDLRTRSVQFRSKWGAAV
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mRNA from alignment at M-pyrifera_M_contig90749:31..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90749.21033.1 ID=mRNA_M-pyrifera_M_contig90749.21033.1|Name=mRNA_M-pyrifera_M_contig90749.21033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig90749:31..462- (Macrocystis pyrifera P11B4 male)
GAGAGGGCATCGGCGGAGCGGGTGTGTGCTTTGTCGTGGTCCTGGGACGG
CGAGTTGCTGGCGGTGGCGGATCGGGCGGTGAAGGCGGGCGGTGGGGGCA
CGGAGAACGTGGTGCGGACGTTTTCGCTGACTCCCGGCGGGGTGAAGAAC
GCCGCGATGATCCGAGGGCACTCTGCGGTGGTGGAGGCGGTGTGCTGGGG
GCGGCACCACGGCAAGTTCCTCTGTTCTACAGCCAGCGATGGCTCCGTGC
GCCTGTGGGACTTGCGGGTGCGTCGCAACGTGGGAGTGGTCGGAGTGAAG
GGGTTTCCTCGCAGCGTGTCCCTCTCCAGTGACGGAAACCAAGGCGCGCT
GGTCACTTCAGACGGCGCTTTGACCCTTTTTGACCTTCGCACGCGATCGG
TGCAGTTCCGGTCCAAGTGGGGTGCTGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90749:31..462-

>mRNA_M-pyrifera_M_contig90749.21033.1 ID=mRNA_M-pyrifera_M_contig90749.21033.1|Name=mRNA_M-pyrifera_M_contig90749.21033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig90749:31..462- (Macrocystis pyrifera P11B4 male)
GAGAGGGCATCGGCGGAGCGGGTGTGTGCTTTGTCGTGGTCCTGGGACGG
CGAGTTGCTGGCGGTGGCGGATCGGGCGGTGAAGGCGGGCGGTGGGGGCA
CGGAGAACGTGGTGCGGACGTTTTCGCTGACTCCCGGCGGGGTGAAGAAC
GCCGCGATGATCCGAGGGCACTCTGCGGTGGTGGAGGCGGTGTGCTGGGG
GCGGCACCACGGCAAGTTCCTCTGTTCTACAGCCAGCGATGGCTCCGTGC
GCCTGTGGGACTTGCGGGTGCGTCGCAACGTGGGAGTGGTCGGAGTGAAG
GGGTTTCCTCGCAGCGTGTCCCTCTCCAGTGACGGAAACCAAGGCGCGCT
GGTCACTTCAGACGGCGCTTTGACCCTTTTTGACCTTCGCACGCGATCGG
TGCAGTTCCGGTCCAAGTGGGGTGCTGCCGTCGAGAGGGCATCGGCGGAG
CGGGTGTGTGCTTTGTCGTGGTCCTGGGACGGCGAGTTGCTGGCGGTGGC
GGATCGGGCGGTGAAGGCGGGCGGTGGGGGCACGGAGAACGTGGTGCGGA
CGTTTTCGCTGACTCCCGGCGGGGTGAAGAACGCCGCGATGATCCGAGGG
CACTCTGCGGTGGTGGAGGCGGTGTGCTGGGGGCGGCACCACGGCAAGTT
CCTCTGTTCTACAGCCAGCGATGGCTCCGTGCGCCTGTGGGACTTGCGGG
TGCGTCGCAACGTGGGAGTGGTCGGAGTGAAGGGGTTTCCTCGCAGCGTG
TCCCTCTCCAGTGACGGAAACCAAGGCGCGCTGGTCACTTCAGACGGCGC
TTTGACCCTTTTTGACCTTCGCACGCGATCGGTGCAGTTCCGGTCCAAGT
GGGGTGCTGCCGTC
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