mRNA_M-pyrifera_M_contig90571.21003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90571.21003.1
Unique NamemRNA_M-pyrifera_M_contig90571.21003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A4W5LD29_9TELE (SP-RING-type domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5LD29_9TELE)

HSP 1 Score: 82.0 bits (201), Expect = 2.320e-18
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA +V+L+CP+ F RI+ PA+G  C+HVQCFDLE+YLQ   ++  W CP+CSK
Sbjct:   73 EDGVEQTAIKVSLKCPITFRRIQLPARGHDCKHVQCFDLESYLQLNCERGTWRCPVCSK 131
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BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A7R9R2V9_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9R2V9_9ACAR)

HSP 1 Score: 81.3 bits (199), Expect = 3.220e-18
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 ASDDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            A ++GV +TA +V+L+CP+ F RI  PA+G  C+HVQCFDLE+YLQ   ++  W CP+C+K
Sbjct:   26 AVEEGVEQTAIKVSLKCPITFKRITLPARGPECKHVQCFDLESYLQLNSERGSWRCPVCNK 86
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BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A7S4IM53_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IM53_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 6.810e-18
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            DD + E + +V +RCPLGF RIE PAKG+ C HVQCFD+E++L F ++Q  W+CPIC K
Sbjct:  299 DDDLCEVSLKVGVRCPLGFTRIENPAKGAYCTHVQCFDIESFLLFCKQQNIWYCPICYK 357
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BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A3B4B5N7_9GOBI (Zinc finger, MIZ-type containing 2 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4B5N7_9GOBI)

HSP 1 Score: 83.6 bits (205), Expect = 9.440e-18
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 ASDDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            A  DGV +TA RV+L+CP+ F RI+ PA+G  CRH+QCFDLE+YLQ   ++  W CP+C+K
Sbjct:   96 AGSDGVEQTAIRVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNK 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A852KD56_UROIN (ZMIZ2 protein (Fragment) n=3 Tax=Aves TaxID=8782 RepID=A0A852KD56_UROIN)

HSP 1 Score: 81.6 bits (200), Expect = 1.020e-17
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA +V+L+CP+ F RI+ PA+G  CRH+QCFDLE+YLQ   ++  W CP+C+K
Sbjct:  125 EDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNK 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A7K7DM79_PHEME (ZMIZ2 protein (Fragment) n=1 Tax=Pheucticus melanocephalus TaxID=371919 RepID=A0A7K7DM79_PHEME)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-17
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA +V+L+CP+ F RI+ PA+G  CRH+QCFDLE+YLQ   ++  W CP+C+K
Sbjct:  127 EDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNK 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A3P8U3P5_AMPPE (Zinc finger, MIZ-type containing 2 n=1 Tax=Amphiprion percula TaxID=161767 RepID=A0A3P8U3P5_AMPPE)

HSP 1 Score: 83.2 bits (204), Expect = 1.230e-17
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA RV+L+CP+ F RI+ PA+G  CRHVQCFDLE+YLQ   ++  W CP+C+K
Sbjct:  108 EDGVEQTAIRVSLKCPITFRRIQLPARGHDCRHVQCFDLESYLQLNCERGTWRCPVCNK 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: W5LHT1_ASTMX (Zinc finger MIZ-type containing 1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=W5LHT1_ASTMX)

HSP 1 Score: 83.6 bits (205), Expect = 1.380e-17
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    4 SDDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            S+DGV +TA RV+L+CP+ F RI+ PA+G  C+HVQCFDLE+YLQ   ++  W CP+C+K
Sbjct:  105 SEDGVEQTAIRVSLKCPITFRRIQLPARGHDCKHVQCFDLESYLQLNCERGTWKCPVCNK 164
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: A0A3Q2X7I1_HAPBU (Zinc finger MIZ domain-containing protein 2-like n=1 Tax=Haplochromis burtoni TaxID=8153 RepID=A0A3Q2X7I1_HAPBU)

HSP 1 Score: 82.8 bits (203), Expect = 1.410e-17
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA RV+L+CP+ F RI+ PA+G  CRH+QCFDLE+YLQ   ++  W CP+C+K
Sbjct:   90 EDGVEQTAIRVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNK 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Match: UPI000D7236A6 (zinc finger MIZ domain-containing protein 2 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI000D7236A6)

HSP 1 Score: 81.6 bits (200), Expect = 1.710e-17
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 DDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQKQMEWFCPICSK 183
            +DGV +TA +V+L+CP+ F RI+ PA+G  CRH+QCFDLE+YLQ   ++  W CP+C+K
Sbjct:  153 EDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGTWRCPVCNK 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90571.21003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4W5LD29_9TELE2.320e-1855.93SP-RING-type domain-containing protein n=1 Tax=Huc... [more]
A0A7R9R2V9_9ACAR3.220e-1852.46Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A7S4IM53_9EUKA6.810e-1857.63Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A3B4B5N7_9GOBI9.440e-1855.74Zinc finger, MIZ-type containing 2 n=1 Tax=Perioph... [more]
A0A852KD56_UROIN1.020e-1754.24ZMIZ2 protein (Fragment) n=3 Tax=Aves TaxID=8782 R... [more]
A0A7K7DM79_PHEME1.060e-1754.24ZMIZ2 protein (Fragment) n=1 Tax=Pheucticus melano... [more]
A0A3P8U3P5_AMPPE1.230e-1757.63Zinc finger, MIZ-type containing 2 n=1 Tax=Amphipr... [more]
W5LHT1_ASTMX1.380e-1756.67Zinc finger MIZ-type containing 1 n=1 Tax=Astyanax... [more]
A0A3Q2X7I1_HAPBU1.410e-1755.93Zinc finger MIZ domain-containing protein 2-like n... [more]
UPI000D7236A61.710e-1754.24zinc finger MIZ domain-containing protein 2 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90571contigM-pyrifera_M_contig90571:323..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.5
Seed ortholog evalue9.4e-15
Seed eggNOG ortholog7994.ENSAMXP00000019393
Preferred namezmiz1
KEGG koko:K22403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger
EggNOG OGs38BVG@33154,3BAIX@33208,3CRDN@33213,47Z6N@7711,48W8C@7742,49X7A@7898,KOG2169@1,KOG2169@2759
COG Functional cat.K
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.887441-CDS-M-pyrifera_M_contig90571:322..4481622816817.887441-CDS-M-pyrifera_M_contig90571:322..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90571 323..448 +
1692278196.1780925-CDS-M-pyrifera_M_contig90571:322..4481692278196.1780925-CDS-M-pyrifera_M_contig90571:322..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90571 323..448 +
1622816817.8984778-CDS-M-pyrifera_M_contig90571:680..7371622816817.8984778-CDS-M-pyrifera_M_contig90571:680..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90571 681..737 +
1692278196.1903648-CDS-M-pyrifera_M_contig90571:680..7371692278196.1903648-CDS-M-pyrifera_M_contig90571:680..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90571 681..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90571.21003.1prot_M-pyrifera_M_contig90571.21003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90571 323..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90571.21003.1

>prot_M-pyrifera_M_contig90571.21003.1 ID=prot_M-pyrifera_M_contig90571.21003.1|Name=mRNA_M-pyrifera_M_contig90571.21003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
ASDDGVVETAFRVTLRCPLGFVRIEQPAKGSLCRHVQCFDLETYLQFGQK
QMEWFCPICSK
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mRNA from alignment at M-pyrifera_M_contig90571:323..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90571.21003.1 ID=mRNA_M-pyrifera_M_contig90571.21003.1|Name=mRNA_M-pyrifera_M_contig90571.21003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=415bp|location=Sequence derived from alignment at M-pyrifera_M_contig90571:323..737+ (Macrocystis pyrifera P11B4 male)
GCCTCAGATGATGGGGTAGTGGAAACTGCCTTTCGAGTCACTCTGCGGTG
TCCCTTGGGATTCGTACGCATCGAGCAGCCTGCAAAGGGGTCTCTCTGCA
GGCACGTGCAGTGCTTTGACCTGGAGGTATGGCTCCTTGCGTCTGCTCGT
TTTCTCTCTCTTCTCTTCTCTCCTCACATACATCCTCGCCTCTCTCTCAC
ACACACACGCTAGCTCTTCTTTTCTCCTCCTCATCTCGCACACTCTCTGT
GCCTGGGTGAATATGTGTAGTGTTGTATCACGTTGTCGCAGCATCCCCTC
CTTTGCCAGCTCCGAGCACAATGCCACGATGACGTATCACATGTTGACAC
CCCTGCAGACGTACCTTCAGTTTGGACAGAAGCAGATGGAGTGGTTCTGT
CCGATCTGTTCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90571:323..737+

>mRNA_M-pyrifera_M_contig90571.21003.1 ID=mRNA_M-pyrifera_M_contig90571.21003.1|Name=mRNA_M-pyrifera_M_contig90571.21003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig90571:323..737+ (Macrocystis pyrifera P11B4 male)
GCCTCAGATGATGGGGTAGTGGAAACTGCCTTTCGAGTCACTCTGCGGTG
TCCCTTGGGATTCGTACGCATCGAGCAGCCTGCAAAGGGGTCTCTCTGCA
GGCACGTGCAGTGCTTTGACCTGGAGGCCTCAGATGATGGGGTAGTGGAA
ACTGCCTTTCGAGTCACTCTGCGGTGTCCCTTGGGATTCGTACGCATCGA
GCAGCCTGCAAAGGGGTCTCTCTGCAGGCACGTGCAGTGCTTTGACCTGG
AGACGTACCTTCAGTTTGGACAGAAGCAGATGGAGTGGTTCTGTCCGATC
TGTTCGAAGACGTACCTTCAGTTTGGACAGAAGCAGATGGAGTGGTTCTG
TCCGATCTGTTCGAAG
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