mRNA_M-pyrifera_M_contig90518.20986.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90518.20986.1
Unique NamemRNA_M-pyrifera_M_contig90518.20986.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A8J2HGN8_COTCN (Similar to ZNF774: Zinc finger protein 774 (Homo sapiens) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2HGN8_COTCN)

HSP 1 Score: 54.3 bits (129), Expect = 3.210e-7
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1
Query:    1 HRCTWAGCELSFKRKTDLEDHFATHTGAKPHVCHI--CQASFRSKPNLRRH 147
            HRC WAGC  +FK++TD + H+  HTG +P  C    C  S+ +   L RH
Sbjct:   26 HRCYWAGCSRTFKKRTDFDSHYRRHTGERPFECEFDGCIKSYVNVSELNRH 76          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A293N588_ORNER (Zinc finger protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293N588_ORNER)

HSP 1 Score: 51.2 bits (121), Expect = 1.620e-6
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:    1 HRCTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHL 150
            H+C +  C  S  + +D+  H  THTG KPH CHIC  +F  K  L +HL
Sbjct:   48 HQCNF--CPYSSDKPSDIIKHERTHTGEKPHACHICSKAFTQKITLEKHL 95          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A293MHR9_ORNER (Zinc finger protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MHR9_ORNER)

HSP 1 Score: 51.2 bits (121), Expect = 5.320e-6
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 1
Query:    1 HRCTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHLRKM-VCQK 171
            H+C    C  S  R  D++ H  THTG KPHVCH+C   F    +L  HLR++  C+K
Sbjct:  193 HQCRL--CPYSSPRIGDIKRHHITHTGQKPHVCHVCFKGFTQTSSLEAHLRRVHECRK 248          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: UPI002003AD96 (protein tramtrack, beta isoform isoform X5 n=1 Tax=Hyalella azteca TaxID=294128 RepID=UPI002003AD96)

HSP 1 Score: 50.8 bits (120), Expect = 7.700e-6
Identity = 19/43 (44.19%), Postives = 25/43 (58.14%), Query Frame = 1
Query:   22 CELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHL 150
            C LSF  K +   H+ TH+G KPH CH+C    R K  L+ H+
Sbjct:  468 CSLSFSDKRNFRHHYMTHSGEKPHACHLCSYRARQKGTLKNHI 510          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A8B6DPT5_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DPT5_MYTGA)

HSP 1 Score: 50.1 bits (118), Expect = 1.460e-5
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   22 CELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHLRKMVC 165
            C+  FK K+DLE H  THT  + H C IC  +++SK NL+ H++   C
Sbjct:  282 CKKGFKYKSDLERHHDTHTDDRLHECKICNITYKSKSNLKDHMKIKHC 329          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A0C2XYF3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XYF3_9AGAM)

HSP 1 Score: 47.0 bits (110), Expect = 2.220e-5
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 1
Query:    7 CTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRH 147
            C W  C  +  ++  +  H   HT  KPH+C +CQ SF+   +L++H
Sbjct:   25 CHWKDCGTTCAKRDHITSHLRVHTPLKPHLCDVCQKSFKRPQDLKKH 71          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A4P9ZPA3_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPA3_9FUNG)

HSP 1 Score: 46.6 bits (109), Expect = 2.360e-5
Identity = 16/49 (32.65%), Postives = 27/49 (55.10%), Query Frame = 1
Query:    7 CTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHLR 153
            C W  C    K++  +  H  +H   +PH+C +CQ SF+   +L++H R
Sbjct:   19 CHWDNCRFQAKKRDHITSHMRSHIDYRPHLCPLCQKSFKRPQDLKKHER 67          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: UPI0008745991 (zinc finger protein 425-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI0008745991)

HSP 1 Score: 49.3 bits (116), Expect = 2.610e-5
Identity = 17/50 (34.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    1 HRCTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHL 150
            ++CT  GC+ +F+RK++  +H  TH   KP +C +C+  F ++    +HL
Sbjct:  256 YKCTIGGCDDTFERKSEFNNHIVTHVSYKPFICQLCKKGFFNETQWDKHL 305          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: UPI0018D14F44 (zinc finger protein 83 isoform X10 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D14F44)

HSP 1 Score: 49.3 bits (116), Expect = 2.710e-5
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   22 CELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHL 150
            C   F  ++ LE+H   HTG KPH+C IC+ +FR+K + R H+
Sbjct:  492 CGKCFSVRSKLEEHVLVHTGEKPHLCAICEKTFRTKKSFRLHM 534          
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Match: A0A2L2Z4L4_PARTP (RE1-silencing transcription factor (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Z4L4_PARTP)

HSP 1 Score: 45.1 bits (105), Expect = 7.340e-5
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 1
Query:   52 LEDHFATHTGAKPHVCHICQASFRSKPNLRRH 147
            L+ H  THTG +PH CHIC   F  K NL++H
Sbjct:   19 LKRHLLTHTGERPHACHICNQRFALKENLKKH 50          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90518.20986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A8J2HGN8_COTCN3.210e-743.14Similar to ZNF774: Zinc finger protein 774 (Homo s... [more]
A0A293N588_ORNER1.620e-644.00Zinc finger protein (Fragment) n=1 Tax=Ornithodoro... [more]
A0A293MHR9_ORNER5.320e-643.10Zinc finger protein (Fragment) n=1 Tax=Ornithodoro... [more]
UPI002003AD967.700e-644.19protein tramtrack, beta isoform isoform X5 n=1 Tax... [more]
A0A8B6DPT5_MYTGA1.460e-543.75Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
A0A0C2XYF3_9AGAM2.220e-534.04Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A4P9ZPA3_9FUNG2.360e-532.65Uncharacterized protein (Fragment) n=1 Tax=Dimarga... [more]
UPI00087459912.610e-534.00zinc finger protein 425-like n=1 Tax=Anoplophora g... [more]
UPI0018D14F442.710e-544.19zinc finger protein 83 isoform X10 n=1 Tax=Plutell... [more]
A0A2L2Z4L4_PARTP7.340e-553.13RE1-silencing transcription factor (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90518contigM-pyrifera_M_contig90518:313..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.0849652-CDS-M-pyrifera_M_contig90518:312..4861622816817.0849652-CDS-M-pyrifera_M_contig90518:312..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90518 313..486 +
1692278195.6719804-CDS-M-pyrifera_M_contig90518:312..4861692278195.6719804-CDS-M-pyrifera_M_contig90518:312..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90518 313..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90518.20986.1prot_M-pyrifera_M_contig90518.20986.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90518 313..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90518.20986.1

>prot_M-pyrifera_M_contig90518.20986.1 ID=prot_M-pyrifera_M_contig90518.20986.1|Name=mRNA_M-pyrifera_M_contig90518.20986.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
HRCTWAGCELSFKRKTDLEDHFATHTGAKPHVCHICQASFRSKPNLRRHL
RKMVCQK*
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mRNA from alignment at M-pyrifera_M_contig90518:313..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90518.20986.1 ID=mRNA_M-pyrifera_M_contig90518.20986.1|Name=mRNA_M-pyrifera_M_contig90518.20986.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig90518:313..486+ (Macrocystis pyrifera P11B4 male)
CATCGATGCACGTGGGCAGGCTGTGAGCTGAGCTTCAAGCGCAAGACTGA CTTGGAAGACCACTTTGCCACCCACACGGGCGCAAAGCCGCACGTCTGCC ACATCTGCCAAGCCTCCTTCCGATCCAAGCCAAACCTCCGTCGGCACTTG CGAAAGATGGTGTGTCAAAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90518:313..486+

>mRNA_M-pyrifera_M_contig90518.20986.1 ID=mRNA_M-pyrifera_M_contig90518.20986.1|Name=mRNA_M-pyrifera_M_contig90518.20986.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig90518:313..486+ (Macrocystis pyrifera P11B4 male)
CATCGATGCACGTGGGCAGGCTGTGAGCTGAGCTTCAAGCGCAAGACTGA
CTTGGAAGACCACTTTGCCACCCACACGGGCGCAAAGCCGCACGTCTGCC
ACATCTGCCAAGCCTCCTTCCGATCCAAGCCAAACCTCCGTCGGCACTTG
CGAAAGATGGTGTGTCAAAAGTAACATCGATGCACGTGGGCAGGCTGTGA
GCTGAGCTTCAAGCGCAAGACTGACTTGGAAGACCACTTTGCCACCCACA
CGGGCGCAAAGCCGCACGTCTGCCACATCTGCCAAGCCTCCTTCCGATCC
AAGCCAAACCTCCGTCGGCACTTGCGAAAGATGGTGTGTCAAAAGTAA
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